BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22520.2

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472492 jgi|Araly1|472492|fgenesh2_kg.1__2446__AT1G22520.1         617    2e-176


> Ahg472492 jgi|Araly1|472492|fgenesh2_kg.1__2446__AT1G22520.1
Length=656

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 379/400 (95%), Gaps = 5/400 (1%)
 Strand=Plus/Plus

Query  6    aaaaaaaaaCCTCCAGATCG---aaaaaaaaTCGAGAAGCGAA-TAGCGGAAGAACAGAA  61
            ||| |||| |||||||||||   |||||||||||||||||||| | ||||||||||||||
Sbjct  1    AAACAAAACCCTCCAGATCGAAAAAAAAAAATCGAGAAGCGAATTTGCGGAAGAACAGAA  60

Query  62   AAAGGGAAATTCTGAGAATCAAATCGGAAAGGTAGAAGAATC-GAGTCGGAAAAATGGAA  120
            ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   AAAGGAAAATTCAGAGAATCAAATCGGAAAGGTAGAAGAATCGGAGTCGGAAAAATGGAA  120

Query  121  ACGACGAAGAGTAACAGCAGCGAGTCCGATGTCAACGCCAAATGGGACGCTTGTCTCGAT  180
            |||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||
Sbjct  121  ACGACGAAGAGTAACAACACCGATTCCGATGTAAACGCCAAATGGGACGCTTGTCTCGAT  180

Query  181  CTCACTGCTCGTCGCTTTGTCTACTCTTCCCTCGGCGGCGCTTTCGCCGGTCTTCTCTTC  240
            ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| 
Sbjct  181  CTCACTGCTCGTCGCTTCGTCTACTCCTCCCTCGGCGGCGCTTTCGCCGGCCTTCTCTTT  240

Query  241  TTCAGGAGTCCGGTTACGAGATGGGCGTCGATTGCTTTTGGTGCTGGAATTGGTATTGGT  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  TTCAGGAGTCCGGTTACGAGATGGGCTTCGATTGCTTTTGGTGCTGGAATTGGTATTGGT  300

Query  301  TCTGCATACACAGATTGTTCTCGTGTTTTTGATGCGTCTTCTTCAACTTCAGCTACTTTA  360
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  301  TCTGCATACACAGATTGTTCTCGTGTTTTTGATGCATCTTCTTCAACTTCAGCTACTTTA  360

Query  361  TTAGCAGCTCCCAAGAGTACGGAGACTTCTGTATCTCAGG  400
            |||||||||||||||||||| |||||||||||||||||||
Sbjct  361  TTAGCAGCTCCCAAGAGTACAGAGACTTCTGTATCTCAGG  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5