BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22540.1
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472494 jgi|Araly1|472494|fgenesh2_kg.1__2448__AT1G22540.1 2791 0.0
> Ahg472494 jgi|Araly1|472494|fgenesh2_kg.1__2448__AT1G22540.1
Length=1917
Score = 2791 bits (1511), Expect = 0.0
Identities = 1791/1920 (93%), Gaps = 44/1920 (2%)
Strand=Plus/Plus
Query 4 AAATGTTCCACAGTGATGCGAGTAACAACACCAAAGCATC-TCTAT-TTTTGTTTTCTTC 61
|||||||||||| |||||||||| |||||| || |||| ||| | ||||||||| ||
Sbjct 1 AAATGTTCCACACTGATGCGAGT---AACACC-AACCATCTTCT-TGTTTTGTTTTTTTA 55
Query 62 A-T-TC-ACACCAAAACAAGAAATCAAATTTGGTTTGATTGATTGATACAAAAGACTTCT 118
| | || | | ||||| || ||| ||| | | | ||||||||||||||||||||||
Sbjct 56 AGTGTCAAAATCAAAAGAA-AAA--AAAAAT-G---G-TTGATTGATACAAAAGACTTCT 107
Query 119 TCAGATATTTACTTCTTCATTTGGAGAAGCCGATTAACTGA-AATGTCGATCTCCGGCGC 177
| | | | || | ||||||||| |||||||| | |||| |||||||||||||
Sbjct 108 TTA-AGA--TA-----T--TTTGGAGAAATCGATTAAC-CATAATGGCGATCTCCGGCGC 156
Query 178 TGTTGATGAAGCTGGGACTCCACTTCTCGC--T----GT---C--A-CCGTCGACTACAG 225
|||||||||||| || |||||||||||||| | || | | ||||||||||||
Sbjct 157 TGTTGATGAAGCCGGAACTCCACTTCTCGCTGTAACCGTCGACGGATCCGTCGACTACA- 215
Query 226 GAA-CAAACCCGCCGTCAAATCTTCCTCCGGTGGCTGGAGATCCGCCGGATTCATCATCG 284
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GAAGCAAACCCGCCGTTAGATCTTCCTCCGGTGGCTGGAGATCCGCCGGATTCATCATCG 275
Query 285 GTGTGGAGGTTGCTGAGCGATTTGCTTACTATGGGATATCGTCGAATCTGATAACGTATT 344
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 276 GTGTGGAGGTGGCTGAGCGATTCGCTTACTACGGGATATCGTCGAATCTGATTACGTATT 335
Query 345 TGACCGGACCACTGGGACAATCGACGGCGGCTGCGGCGGCTAACGTGAACGCTTGGTCTG 404
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 336 TGACGGGACCACTAGGACAATCGACGGCGGCTGCGGCGGCTAACGTCAACGCTTGGTCTG 395
Query 405 GAACGGCGTCGTTGCTTCCTCTCCTTGGTGCTTTTGTCGCTGACTCGTTTCTAGGTCGTT 464
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 396 GAACGGCGTCGTTGCTTCCTCTCCTTGGTGCTTTTGTCGCTGACTCGTTTCTTGGTCGTT 455
Query 465 TCCGGACAATCCTCGCCGCCTCTGCTCTCTATATAGTGGGGCTGGGTGTATTGACTTTAT 524
|||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||
Sbjct 456 TCCGTACAATCCTCGCCGCCTCTGCTCTCTATATATTGGGGCTTGGTTTATTGACGTTAT 515
Query 525 CTGCAATGATTCCTTCAGACTGCAAAGTTTCGAATCTACTCTCGTCATGCTCTCCTCGAT 584
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 516 CTGCAATGATTCCTTTAGACTGCAAAGTTTCGAATCTACTCTTGTCATGCTCTCCTCGAT 575
Query 585 TTCAAGTAATTACATTCTTTAGTGCATTGTATCTAGTGGCTTTAGCTCAAGGTGGTCACA 644
|||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 576 TTCAAGTAATCACATTCTTTAGTGCCCTGTATCTAGTGGCGCTAGCTCAAGGCGGTCACA 635
Query 645 AGCCGTGTGTTCAGGCTTTTGGAGCGGATCAGTTTGATGAAAAGGAACCTGAAGAGTGCA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AGCCGTGTGTTCAGGCTTTTGGAGCGGATCAGTTTGATGAAAAGGAACCTGAAGAGTGCA 695
Query 705 AAGCAAAGAGTTCTTTCTTTAATTGGTGGTATTTTGGTATGTGCTTTGGGACGTTAACAA 764
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AAGCAAAGACTTCTTTCTTTAATTGGTGGTATTTTGGTATGTGCTTTGGGACGTTAACAA 755
Query 765 CTCTATGGGTGTTGAATTATATCCAAGATAATCTAAGTTGGGCGTTAGGCTTTGGTATTC 824
|||||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 756 CTCTATGGGTCTTGAATTACATCCAGGATAATCTAAGTTGGGCCTTAGGATTTGGTATTC 815
Query 825 CATGCATTGCTATGGTAGTTGCTTTGGTTGTTCTCTTGCTTGGAACCTGCACTTATCGGT 884
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 816 CATGCATTGCTATGGTAGTTGCTTTGGTTGTTTTCTTGCTTGGAACCTGCACTTATCGGT 875
Query 885 TCAGTATTCGAAGAGAAGATCAAAGTCCTTTTGTGAGGATTGGAAATGTTTATGTAGCGG 944
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 876 TCAGTATTCGAAGAGAAGATCGAAGTCCTTTTGTGAGGATTGGAAATGTTTATGTAGCGG 935
Query 945 CTGTAAAGAACTGGAGTGTTTCAGCTTTAGATGTAGCTGCTGCAGAGGAGAGACTTGGTC 1004
||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 936 CTGTAAAGAACTGGAGTGTGTCAGCTTCAGCTGTAGCTGCTGCAGAGGAGAGACTTGGTC 995
Query 1005 TTGTGTCTTGCAGTAGCTCTCAGCAATTTAGTTTTCTCAACAAAGCTCTGGTCGCAAAGA 1064
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TTGTGTCTCGCAATAGCTCACAGCAATTTAGTTTTCTCAACAAAGCTCTGGTCGCAAAGA 1055
Query 1065 ATGGTTCTTGTAGTATAGATGAACTTGAAGAAGCAAAATCAGTGCTTAGGTTAGCTCCGA 1124
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1056 ATGGTTCTTGTAGTATAGATGAACTCGAAGAAGCAAAATCAGTACTTAGGTTAGCTCCGA 1115
Query 1125 TATGGTTAACATGCTTGGTTTATGCGGTTGTGTTTGCGCAGTCTCCAACTTTCTTCACCA 1184
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1116 TATGGTTAACTTGCTTGGTTTATGCGGTTGTGTTTGCGCAGTCTCCGACTTTCTTCACCA 1175
Query 1185 AACAAGGAGCTACAATGGAGAGATCAATCACACCTGGTTACAAGATCTCTCCGGCTACCC 1244
|||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1176 AACAAGGAGCCACGATGGAGAGATCAATCACACCTGGTTACAAAATCTCTCCAGCTACCC 1235
Query 1245 TCCAGTCCTTCATCAGCCTCTCTATAGTCATCTTCATCCCAATCTACGACCGTGTACTAA 1304
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1236 TCCAGTCCTTCATCAGCCTCTCTATAGTCATCTTCATCCCCATCTACGACCGTGTACTCA 1295
Query 1305 TCCCAATTGCAAGATCATTTACACATAAACCAGGCGGAATCACAATGCTTCAGAGAATCG 1364
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TCCCAGTTGCAAGGTCGTTTACACATAAACCAGGCGGAATCACAATGCTTCAGAGAATCG 1355
Query 1365 GCACAGGCATATTCCTCTCTTTCCTTGCTATGGTTGTAGCCGCTCTAGTGGAGATGAAAA 1424
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1356 GCACAGGCATATTCCTCTCTTTCCTTGCTATGGTAATAGCCGCTCTAGTGGAGATGAAAA 1415
Query 1425 GGCTTAAAACTGCTGCGGATTACGGGCTCGTAGATTCACCTGACGCTACGGTTCCAATGA 1484
||||||||||||||||||||||||| ||| | |||| || |||||||||||||||||||
Sbjct 1416 GGCTTAAAACTGCTGCGGATTACGGACTCATCGATTTGCCAGACGCTACGGTTCCAATGA 1475
Query 1485 GTGTGTGGTGGTTAGTTCCTCAGTATGTTCTCTTTGGTATCACGGATGTTTTCGCAATGG 1544
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1476 GTGTGTGGTGGTTAGTTCCTCAGTATGTTCTCTTTGGTATCACAGATGTTTTCGCAATGG 1535
Query 1545 TGGGTCTTCAAGAGTTCTTCTATGACCAAGTCCCGAATGAGCTGAGGAGTGTGGGGTTGG 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1536 TGGGTCTTCAAGAGTTCTTCTATGACCAAGTCCCGAATGAGCTGAGGAGTGTGGGATTGG 1595
Query 1605 CTCTGTACTTGAGCATATTCGGTATTGGTAACTTTCTCAGCAGTTTCATGATATCAATCA 1664
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1596 CTCTGTACTTGAGCATATTCGGTATTGGCAACTTTCTCAGCAGTTTCATGATATCAATCA 1655
Query 1665 TTGAGAAAGCGACAAGCCAATCTGGTCAAGCGAGTTGGTTCGCAAACAACCTGAACCAAG 1724
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1656 TTGAGAAAGCGACAAGCCAATCTGGTCAAGTGAGTTGGTTCGCAAACAACCTGAACCAGG 1715
Query 1725 CTCATCTCGATTACTTTTACTGGTTACTCGCTTGTCTCAGCTTCATTGGCTTAGCCTCCT 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 CTCATCTCGATTACTTTTACTGGTTACTCGCTTGTCTCAGCTTCATTGGCTTAGCCTCCT 1775
Query 1785 ACTTGTATGTTGCAAAGTCTTACGTCTCTAAAAGGCTCGACACCAGTTAAACCCAAAATC 1844
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1776 ACTTGTATGTTGCAAAGTCTTACGTCTCTAAAAGGCTCAACACCAGTTAAACCCAAAATC 1835
Query 1845 TCTCGTTTAAATATCGCAGGTACTCTCTTTCCCTCTCTTGTGTAATTTTTGAATACACAA 1904
|| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1836 TCGCGTTTAAATGTCGCAGGTACTCTCTTTCCCTCTCTTGTGTACTTCTTGAATACACAA 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77018475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5