BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22550.1
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472495 jgi|Araly1|472495|fgenesh2_kg.1__2449__AT1G22550.1 2671 0.0
Ahg912113 jgi|Araly1|912113|Al_scaffold_0001_2367 1410 0.0
> Ahg472495 jgi|Araly1|472495|fgenesh2_kg.1__2449__AT1G22550.1
Length=1840
Score = 2671 bits (1446), Expect = 0.0
Identities = 1703/1827 (93%), Gaps = 18/1827 (1%)
Strand=Plus/Plus
Query 38 TAAATATAAATAAATACATATAGCTTAAAATCCAGTTTCCTCCGACAAGAAAATGGCGAT 97
|||||||| ||| ||| ||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 26 TAAATATATATATATATATATAGCTTAAAATCAAGTTTCCTCCAACAAG-AAATGGCGAT 84
Query 98 AGCCGAAGAAGAAGCTGCACTTATAGAAGATTCCGTCAGCGACTCCGTTGACCACCGTGG 157
||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 85 AGCTGAAGAAGAAGCTGCACTTATAGAAGATACCGTCAGCGACTCGGTCGACCACCGTGG 144
Query 158 ACTTCCTGCCGGAAAATCTTCCACCGGCGGATGGAGATCCGCCTGGTACATTATAGGTGT 217
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 145 ACTTCCCGCCGGAAAATCTTCCACCGGTGGATGGAGATCCGCCTGGTACATTATAGGTGT 204
Query 218 GGAAGTTGGAGAAAGATTTGCTTACTTTGGGATTGGTTCCAACTTAATTACTTACCTCAC 277
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 205 GGAAGTTGGAGAAAGATTCGCTTACTTTGGGATTGGTTCCAACTTAATTACTTACCTCAC 264
Query 278 CGGACCTCTCGGACAATCAACAGCCACCGCCGCCGTGAACGTGAACACATGGTCAGGAAC 337
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 265 CGGACCTCTCGGACAATCAACGGCCACCGCCGCCGTGAACGTGAACACATGGTCAGGAAC 324
Query 338 CGCCTCGATACTTCCTGTTTTAGGAGCTTTCATTGCAGATGCTTATCTTGGTCGTTACCG 397
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CGCTTCGATGCTTCCTGTTTTAGGAGCTTTCATTGCAGATGCTTATCTTGGTCGTTACCG 384
Query 398 TACCATTGTTGTTGCTTCCCTCATCTACATACTTGGACTAGGACTATTGACCTTATCCTC 457
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 385 TACCATTGTTATTGCTTCCCTCATCTACATACTTGGACTAGGACTATTGACCTTATCGTC 444
Query 458 TATCTTAATCCTAATGGGATTATCGGAGCAACGTCAACATAACCGCAACGCTTCTGCTAA 517
|||||||||||||||||||||||| |||||||| ||| || | |||||||||||
Sbjct 445 TATCTTAATCCTAATGGGATTATCTGAGCAACG------TAA-CG--ATGCTTCTGCTAA 495
Query 518 ACCGtttttttGGGTGAATATATTATTCTTTTGTTCTCTGTATTTGGTGGCGATCGGACA 577
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ACCGTTGTTTTGGGTGAATATATTATTCTTTTGTTCTCTGTATTTGGTGGCGATCGGACA 555
Query 578 AGGCGGACACAAGCCATGTGTTCAAGCTTTTGGTGCTGACCAGTTTGATGTGGGAGATCC 637
||||||||||||||| |||||||| || |||||||| |||||||||||||||| ||||||
Sbjct 556 AGGCGGACACAAGCCGTGTGTTCAGGCGTTTGGTGCGGACCAGTTTGATGTGGAAGATCC 615
Query 638 AAAGGAGAGAATAAGTAGAGGATCGTTTTTCAATTGGTGGTTCTTGAGTTTATCCGCGGG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 616 AAAGGAGAGAATAAGTAGAGGATCGTTTTTCAATTGGTGGTTCTTGAGTTTATCCGCAGG 675
Query 698 AATAACTTTGTCGATTATTGTGGTGGTTTACGTTCAAGACAATGTTAATTGGGCTCTTGG 757
|||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 676 AATAACTTTGTCCATTATCGTGGTGGTTTATGTTCAAGACAATGTTAATTGGGCGCTTGG 735
Query 758 GTTTGGTATCCCTTGTTTGTTCATGGTCATGGCTCTTGCTCTCTTCTTGTTTGGAAGAAA 817
|||||| |||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||
Sbjct 736 GTTTGGGATCCCTTGTTTGTTTATGGTTATGGCTCTTGCTCTCTTTTTGCTTGGAAGAAA 795
Query 818 AACTTATAGATATCCAAGAGGAGATCGCGAGGGGAAGAATAACGCTTTTGCGAGGATCGG 877
|||||||||||| |||||| ||||| || | |||||| ||||||||||| || |||||
Sbjct 796 AACTTATAGATACCCAAGAATAGATCATGAAGAGAAGAAGAACGCTTTTGCAAGAATCGG 855
Query 878 TAGAGTTTTCTTGGTGGCGTTCAAGAATCGGAAACTGAAGTTAACACATTCAGGTCAGTT 937
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 856 TCGAGTTTTCTTGGTGGCGTTCAAGAATCGGAAACTGAAGTTAACACATTCGGGTCAGTT 915
Query 938 GGAAGTTGGTTCGTACA-AGAAATGTAAAGGACAACTTGAGTTCCTAGCAAAAGCGTTGC 996
||||| |||||||| || ||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 916 GGAAGATGGTTCGT-CAGAGAAATGTAAAGGACGGCTTGAATTCCTAGCAAAAGCGTCGC 974
Query 997 TACCAGGAGAAGGAGGTGTAGAGCCATGTAGTAGTAGGGACGTGGAAGACGCGATGGCTT 1056
|| |||||||||||||| ||||||| |||| ||| ||||||||||||||| |||||||||
Sbjct 975 TATCAGGAGAAGGAGGTCTAGAGCCCTGTAATAGCAGGGACGTGGAAGACACGATGGCTT 1034
Query 1057 TGGTTAGGCTTATTCCGA-TATGGATCACATCAGTAGTGAGCACGATTCCTTACGCTCAA 1115
|||| || |||||||| | | ||||||||||| || ||||||||||||||||||||||||
Sbjct 1035 TGGTAAGACTTATTCC-ATTGTGGATCACATCGGTGGTGAGCACGATTCCTTACGCTCAA 1093
Query 1116 TATGCTACTTTCTTCACAAAACAAGGCGTTACGGTGGACAGAAAAATCTTGCCGGGTTTC 1175
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TACGCTACTTTCTTCACAAAGCAAGGCGTTACGGTGGACAGAAAAATCTTGCCGGGTTTG 1153
Query 1176 GAGATCCCTCCGGCTTCTTTTCAAGCACTCATCGGTTTATCGATTTTCATCTCAGTTCCA 1235
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1154 GAAATCCCTCCGGCTTCTTTTCAGGCGCTAATCGGTTTATCGATTTTCATCTCAGTTCCG 1213
Query 1236 ACTTATGAGCGTGTTTTCCTTCCGTTAGCTAGATTGATTACCAAAAAGCCTTCAGGGATC 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 ACTTATGAGCGTGTTTTCCTTCCGTTAGCTAGATTGATTACCAAAAAGCCTTCAGGGATC 1273
Query 1296 ACAATGCTACAAAGAATAGGAGCTGGAATGGTGCTCTCCAGCTTAAATATGGTGGTTGCA 1355
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1274 ACAATGCTACAGAGAATAGGAGCTGGAATGGTGCTCTCTAGCTTAAATATGGTGGTTGCA 1333
Query 1356 GCGTTAGTAGAAATGAAACGGCTCGAGACGGCTAAAGAACATGGGCTTGTGGATAGACCG 1415
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1334 GCATTGGTAGAAATGAAACGGCTCGAGACGGCTAAGGAACATGGGCTTGTGGATAGACCG 1393
Query 1416 GACGCAACCATCCCAATGTCCATATGGTGGTTCGTTCCTCAGTATTTACTACTTGGGATG 1475
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1394 GACGCAACCATCCCAATGTCCATATGGTGGTTCGTTCCTCAGTATTTACTGCTCGGGATG 1453
Query 1476 ATCGATGTATTCTCACTAGTGGGGACACAAGAATTCTTCTACGACCAGGTCCCCACGGAG 1535
|||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 1454 ATCGATGTATTCTCACTAGTAGGTACTCAAGAATTCTTCTACGACCAAGTCCCCACGGAG 1513
Query 1536 CTAAGGAGTATTGGTCTTGCACTTTCTTTGAGTGCGATGGGTCTTGCGAGCTTCTTGAGC 1595
|| |||||||||||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 1514 CTGAGGAGTATTGGTCTCGCACTTTCTTTGAGCGCAATGGGTCTTGCCAGCTTCTTGAGT 1573
Query 1596 GGTTTTCTAATCACTGTGATTAATTGGGCTACCGGGAAAAATGGCGGCGATAGCTGGTTC 1655
||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||
Sbjct 1574 GGTTTTCTAATCACTGTGATTAATTGGGCGACCGGGAAAAATGGTGGTGGTAGCTGGTTC 1633
Query 1656 AATACTAACCTGAACAGAGCCCATGTCGATTATTTTTACTGGTTGCTTGCTGCTTTCACT 1715
|| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1634 AACACTAATCTGAACCGAGCCCATGTCGATTATTTTTACTGGTTGCTTGCCGCTTTCACC 1693
Query 1716 GCCATTGGGTTCTTGGCGTTTTTGTTATTATCCAGGCTGTATGTGTATCGCCGTGTAGAT 1775
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 1694 GCCATTGGGTTCTTGGCGTTTTTGTTCTTCTCCAGGCTGTATGTGTATCGCCGGGTAGAT 1753
Query 1776 CAAGTCTAAGaaaaaaaaaGTCAACGTGTATCTACTTTCATATCATAT--TTGGT-T-AT 1831
||| |||||||| | |||| ||||||||||||||||||||||||||| ||||| | ||
Sbjct 1754 CAAATCTAAGAATATAAAATTCAACGTGTATCTACTTTCATATCATAAAATTGGTGTTAT 1813
Query 1832 TCATAACGTGGTTAGAAACTCTTTAAC 1858
|| ||||||||||||||||||||||||
Sbjct 1814 TCGTAACGTGGTTAGAAACTCTTTAAC 1840
> Ahg912113 jgi|Araly1|912113|Al_scaffold_0001_2367
Length=1710
Score = 1410 bits (763), Expect = 0.0
Identities = 1425/1731 (82%), Gaps = 99/1731 (6%)
Strand=Plus/Plus
Query 95 GATAGCC-GAAGAAGAAGCTGCACTTATAGAAGATTCCGTCAGCGACTCCGTTGACCACC 153
|||| || || ||||||| | ||||| | ||||||| ||||| || ||||| |||||||
Sbjct 6 GATA-CCAGAGGAAGAAGTTACACTTCTTGAAGATTATGTCAGTGATTCCGTCGACCACC 64
Query 154 GTGGACTT-CCTGCCGGAAAATCTTCCACCGGCGGATGGAGATCCGCCTGGTACATTATA 212
||||| || || ||||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 65 GTGGA-TTGCCCGCCGGGAAATCTTCCACCGGTGGATGGAGATCCGCCTGGTTCATTATA 123
Query 213 GGTGTGGAAGTTGGAGAAAGATTTGCTTACTTTGGGATTGGTTCCAACTTAATTACTTAC 272
||||||||||||| ||| || |||||||||||||| |||| | ||| || |||||||||
Sbjct 124 GGTGTGGAAGTTGCAGAGAGGTTTGCTTACTTTGGTATTGCCTGCAATTTGATTACTTAC 183
Query 273 CTCACCGGACCTCTCGGACAATCAACAGCCACCGCCGCCGTGAACGTGAACACATGGTCA 332
|| |||||||| ||||||||||| || || || || ||||||||||||||||| |||||
Sbjct 184 CTAACCGGACCGCTCGGACAATCGACGGCGACTGCTGCCGTGAACGTGAACACGTGGTCG 243
Query 333 GGAACCGCCTCGATACTTCCTGTTTTAGGAGCTTTCATTGCAGATGCTTATCTTGGTCGT 392
||||| ||||| || |||||| |||||||||||||| | || || |||||||||||||||
Sbjct 244 GGAACTGCCTCTATGCTTCCTATTTTAGGAGCTTTCGTAGCTGACGCTTATCTTGGTCGT 303
Query 393 TACCGTACCATTGTTGTTGCTTCCCTCATCTACATACTTGGACTAGGACTATTGACCTTA 452
|||||||| ||| | || |||||||||||||||||||| || |||||| ||||||| |||
Sbjct 304 TACCGTACAATTATCGTAGCTTCCCTCATCTACATACTGGGGCTAGGATTATTGACATTA 363
Query 453 TCCTCTATC-TTAATCCTAATGGGATTATCGGAGCAACGTCAACATAACCGCAACGCTTC 511
|| || || |||||| ||||||||||||| |||||||| ||| |||||||||
Sbjct 364 TCAGCT-TCTTTAATCATAATGGGATTATCTGAGCAACG------TAA---CAACGCTTC 413
Query 512 TGCTAAACCGtttttttGGGTGAATATA-TTATTCTTTTGTTCTCTGTATTTGGTGGCGA 570
||||||||| | | ||||| |||||| | || ||||||||||||||||||||||||||||
Sbjct 414 TGCTAAACCATCTATTTGGATGAATACACTT-TTCTTTTGTTCTCTGTATTTGGTGGCGA 472
Query 571 TCGGACAAGGCGGACACAAGCCATGTGTTCAAGCTTTTGGTGCTGACCAGTTTGATG-TG 629
| |||||||| |||||||| || ||||||||||| |||||||| ||||||||||||| ||
Sbjct 473 TTGGACAAGGTGGACACAAACCGTGTGTTCAAGCGTTTGGTGCGGACCAGTTTGATGCTG 532
Query 630 GGAGATCCAAAGGAGAG-AATAA-GTAGAGGATCGTTTTTCAATTGGTGGTTCTTGAGTT 687
|||||||||||| || |||| | ||||| ||||||||||||||||||||||||||||
Sbjct 533 A-AGATCCAAAGGA-AGTAATAGCG-AGAGGGTCGTTTTTCAATTGGTGGTTCTTGAGTT 589
Query 688 TATCCGCGGGAATAA-CTTTGTCGATTATTGTGGTGGTTTACGTTCAAGACAATGTTAAT 746
|||| |||||||||| ||| |||||||||||||| | || |||||||| |||||||||
Sbjct 590 TATCTGCGGGAATAAGCTTA-TCGATTATTGTGGTCGCGTATGTTCAAGAAAATGTTAAT 648
Query 747 TGGGC-TCTTGGGTTTGGTATCCCTTGTTTGTTCATGGTCATGGCTCTTGCTCTCTTCTT 805
||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||||||
Sbjct 649 TGGGCGT-TTGGGTTTGGGATTCCTTGTTTGTTTATGGTTATGGCTCTTGCTATCTTCTT 707
Query 806 GTTTGGAAGAAAAACT-TATAGATATCC-AAGAGGAGATCGCGAGGG-G--AAGA--A-T 857
| | || || || | | |||||||| || ||| || | || ||||| | || | | |
Sbjct 708 GCTCGGGAGGAAGA-TATATAGATACCCTAAGGGGGG-TCACGAGGATGTTAATAGTAGT 765
Query 858 AACGCTTTTGC--G-A--------G---GA-TCGGTAGAGTTTTC-TTGGTGGCGTTCAA 901
||| ||||| | | | | || ||||||||||||| ||| || |||||||
Sbjct 766 AACACTTTTACTAGTAACACTTTTGCCAGAATCGGTAGAGTTTTTGTTGTTG-CGTTCAA 824
Query 902 GAATCGGAAACTGAAGTTA-ACACATTCAGGTCAG--TT-GGA--A-G-T-T---GG--- 946
|||||||||||||| |||| | |||||| ||| | || ||| | | | | ||
Sbjct 825 GAATCGGAAACTGAGGTTAGA-ACATTCTGGTTTGGGTTTGGATCAAGGTCTATTGGAGG 883
Query 947 -T--TC-GTACAAGAAATGTAAAGGACAACTTGAGTTCCTAGCAAAAGCGTTGCTAC-CA 1001
| || || | ||||| || |||| | || | |||||||||||||| || | | ||
Sbjct 884 ATGGTCAGTCCGAGAAACGTGAAGGTCGGCTCAATTTCCTAGCAAAAGCAATGAT-CTCA 942
Query 1002 GGAGAAGGAGGTGTAGAGCCATGTAGTAGTAGGGACGTGGAAGACGCGATGGCTTTGGTT 1061
|||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 943 AGAGAAGAAGGTGCAGAGCCATGTAGTGGTAGGGACGTGGAAGACGCCAAGGCTTTGGTA 1002
Query 1062 AGGCTTATTCCGATATGGATCACATCAGTAGTGAGCACGATTCCTTACGCTCAATATGCT 1121
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
Sbjct 1003 AGGCTTATTCCGATATGGATCACATCGGTTGTGAGCACGATTCCGTACGCTCAATACATT 1062
Query 1122 ACTTTCTTCACAAAACAAGGCGTTACGGTGGACAGAAAAATCTTGCCGGGTTTCGAGATC 1181
|||||||| || || ||||| || ||||||||||||| |||||| ||||| | || |||
Sbjct 1063 ACTTTCTTTACGAAGCAAGGTGTCACGGTGGACAGAAGAATCTTACCGGGCGTAGAAATC 1122
Query 1182 CCTCCGGCTTCTTT-TCAAGCACTCATCGGTTTATCGATTTTCATCTCAGTTCCAA-CTT 1239
|| |||||||||| | || |||||||| |||||||| |||||||||| || | ||
Sbjct 1123 CCAGCGGCTTCTTTATTGT-CATTCATCGGTGTATCGATTCTCATCTCAGTGCCGATCT- 1180
Query 1240 ATGAGCGTGT-TTTCCTTCCGTTAGCTAGATTGATTACCAAAAAGCCTTCAGGGATCACA 1298
|||||||||| |||| | ||| |||| ||| |||||||||||||||||| |||||||||
Sbjct 1181 ATGAGCGTGTATTTC-TCCCGATAGCCAGAATGATTACCAAAAAGCCTTTTGGGATCACA 1239
Query 1299 ATGCTACAAAGAATAGGAGCTGGAATGGTGCTCTCCAG-CTTAAATATGGTGGTTGCAGC 1357
||||| || ||||||||| ||||||||||||| || || ||| |||||| || | || ||
Sbjct 1240 ATGCTCCAGAGAATAGGAACTGGAATGGTGCTTTC-AGTCTTCAATATGATGCTCGCGGC 1298
Query 1358 GTTAGTAGAAATGAAACGGCTCGAGACGGCTAAAGAACATGGGCTTGTGGATA-GACCGG 1416
|| ||||||| ||||||||| | | |||| ||||| ||||| ||||| | | ||||
Sbjct 1299 ATTGGTAGAAACGAAACGGCTAAATATTGCTAGGGAACACGGGCTCGTGGACAAG-CCGG 1357
Query 1417 ACGCAACCATCCCAATGTCCATATGGTGGTTCGTTCCTCAGTATTTACTACTTGGGATGA 1476
|||| ||| | ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 1358 ACGCGACCGTTCCAATGTCCATATGGTGGTTCGTCCCTCAGTATTTGCTACTCGGGATGA 1417
Query 1477 TCGATGTATTCTCACTAGTGGGGACACAAGAATTCTTCTACGACCAGGTCCCCACGGAGC 1536
||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1418 TCGATGTGTTCTCTCTGGTGGGAACACAAGAATTCTTCTACGACCAAGTCCCAACGGAGC 1477
Query 1537 TAAGGAGTATTGGTCT-TGCACTTTCTTTGAGTGCGATGGGTCTTGCGAGCTTCTTGAGC 1595
||||||| |||||||| | | || ||||||||||||||||||||| |||||||||||||
Sbjct 1478 TAAGGAGCATTGGTCTCT-CGCTATCTTTGAGTGCGATGGGTCTTTCGAGCTTCTTGAGT 1536
Query 1596 GGTTTTCTAATCACTGTGATTAATTGGGCTACCGGGAAAAATGGCGGCGATAGCTGGTTC 1655
|||||||| |||||||||||| ||||||||||||| |||| | |||| | | | |||
Sbjct 1537 GGTTTTCTCATCACTGTGATTGATTGGGCTACCGG-AAAA--GACGGC--T-G--G-TTC 1587
Query 1656 AATACTAACCTGAACAGAGCCCATGTCGATTATTTTTACTGGTTGCTTGCTGCTTTCACT 1715
|| |||||||||||| |||||||||||||||| ||||| ||||| || || ||||||||
Sbjct 1588 AACACTAACCTGAACCGAGCCCATGTCGATTACTTTTATTGGTTACTCGCCGCTTTCACA 1647
Query 1716 GCCATTGGGTTCTTGGCGTTTTTGTT-ATTATCCAGGCTGTATGTGTATCG 1765
||||||| ||||| ||||| ||||| || |||| | |||||||||||||
Sbjct 1648 GCCATTGCTTTCTTTGCGTTCTTGTTCATC-TCCAAGATGTATGTGTATCG 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69819419085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5