BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22570.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912113 jgi|Araly1|912113|Al_scaffold_0001_2367 2538 0.0
Ahg472495 jgi|Araly1|472495|fgenesh2_kg.1__2449__AT1G22550.1 1465 0.0
> Ahg912113 jgi|Araly1|912113|Al_scaffold_0001_2367
Length=1710
Score = 2538 bits (1374), Expect = 0.0
Identities = 1602/1710 (94%), Gaps = 24/1710 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATACCAGAGGAAGAAGTTGCAC-TCTTAGAAGATTACGTTAGCGATTCCGTCGA 59
|||||||||||||||||||||||| ||| |||| |||||||| || || |||||||||||
Sbjct 1 ATGAAGATACCAGAGGAAGAAGTTACACTTCTT-GAAGATTATGTCAGTGATTCCGTCGA 59
Query 60 CCACCGTGGATTTCCCGCCGGAAAATCTTCCACCGGCGGATGGAGATCGGCCTGGTTCAT 119
|||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 60 CCACCGTGGATTGCCCGCCGGGAAATCTTCCACCGGTGGATGGAGATCCGCCTGGTTCAT 119
Query 120 TATAGGTGTGGAAGTTGCAGAGAGGTTTGCTTACTTTGGGATTGCCTGCAATTTGATTAC 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TATAGGTGTGGAAGTTGCAGAGAGGTTTGCTTACTTTGGTATTGCCTGCAATTTGATTAC 179
Query 180 TTACCTCACCGGACCTCTCGGACAATCGACGGCGAAAGCTGCCGTGAACGTGAACACGTG 239
|||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TTACCTAACCGGACCGCTCGGACAATCGACGGCGACTGCTGCCGTGAACGTGAACACGTG 239
Query 240 GTCGGGAACTGCCTCTATACTTCCTATTTTAGGAGCTTTCGTAGCTGACGCTTATCTTGG 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCGGGAACTGCCTCTATGCTTCCTATTTTAGGAGCTTTCGTAGCTGACGCTTATCTTGG 299
Query 300 TCGTTACCGTACTATTGTCGTAGCTTCCCTCATCTACATATTGGGGCTAGGACTATTGAC 359
|||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 300 TCGTTACCGTACAATTATCGTAGCTTCCCTCATCTACATACTGGGGCTAGGATTATTGAC 359
Query 360 GTTATCAGCTTCTTTAATCATAATGGGATTATCTAAGCAACGTAACGACGCTTCTGCTAA 419
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 360 ATTATCAGCTTCTTTAATCATAATGGGATTATCTGAGCAACGTAACAACGCTTCTGCTAA 419
Query 420 ACCATCTATTTGGGTTAATACACTTTTCTTCTGTTCTCTGTATTTGGTGGCGATCGGACA 479
||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 ACCATCTATTTGGATGAATACACTTTTCTTTTGTTCTCTGTATTTGGTGGCGATTGGACA 479
Query 480 AGGTGGACACAAACCGTGTGTTCAAGCGTTTGGTGCGGACCAGTTTGATGCTGAAGATCC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGTGGACACAAACCGTGTGTTCAAGCGTTTGGTGCGGACCAGTTTGATGCTGAAGATCC 539
Query 540 GAAGGAGGTAATAGCGAGAGGGTCGTTTTTCAATTGGTGGTTCTTGAGTTTATCTGCGGG 599
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAGGAAGTAATAGCGAGAGGGTCGTTTTTCAATTGGTGGTTCTTGAGTTTATCTGCGGG 599
Query 600 AATAAGCATATCGATTATTGTGGTCGCTTATGTTCAAGAAAATGTTAATTGGGCGTTTGG 659
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 AATAAGCTTATCGATTATTGTGGTCGCGTATGTTCAAGAAAATGTTAATTGGGCGTTTGG 659
Query 660 GTTTGGGATTCCTTGTTTGTTTATGGTTATGGCTCTTGCTATCTTCTTGCTCGGGAGGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTTGGGATTCCTTGTTTGTTTATGGTTATGGCTCTTGCTATCTTCTTGCTCGGGAGGAA 719
Query 720 GATATATAGATACCCAAAGGGACATCATGAGGAGGTTAATAGTAGTAACAC-TTT--T-G 775
||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| | |
Sbjct 720 GATATATAGATACCCTAAGGGGGGTCACGAGGATGTTAATAGTAGTAACACTTTTACTAG 779
Query 776 ---CA--------AGAATCGGTAGAGTTTTTGTTATTGCGTTCAAGAATCGGAAACTGAG 824
|| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 TAACACTTTTGCCAGAATCGGTAGAGTTTTTGTTGTTGCGTTCAAGAATCGGAAACTGAG 839
Query 825 GTTAGAACATTCTAGTTTGGAATTGGATCAAGGTCTATTGGAGGATGGTCAGTCCGAGAA 884
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTAGAACATTCTGGTTTGGGTTTGGATCAAGGTCTATTGGAGGATGGTCAGTCCGAGAA 899
Query 885 ACGTAAAGATCGGCTCAATTTCCTAGCAAAAGCAATGATCTC-A-AG-AGAAGGTGTTGA 941
|||| ||| ||||||||||||||||||||||||||||||||| | || |||||||| ||
Sbjct 900 ACGTGAAGGTCGGCTCAATTTCCTAGCAAAAGCAATGATCTCAAGAGAAGAAGGTGCAGA 959
Query 942 GCCATGTAGTGGTAGGGACGTGGATGACGCGAAGGCTTTGGTAAGGCTTATTCCGATATG 1001
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 960 GCCATGTAGTGGTAGGGACGTGGAAGACGCCAAGGCTTTGGTAAGGCTTATTCCGATATG 1019
Query 1002 GATCACATAC-GTGGTGAGCACGATTCCGTACGCTCAGTACATAACTTTCTTCACGAAGC 1060
|||||||| | || ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1020 GATCACAT-CGGTTGTGAGCACGATTCCGTACGCTCAATACATTACTTTCTTTACGAAGC 1078
Query 1061 AAGGGGTCACGGTGGACAGAAGAATCTTACCGGGAGTAGAAATTCCAGCGGCTTCTTTAT 1120
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1079 AAGGTGTCACGGTGGACAGAAGAATCTTACCGGGCGTAGAAATCCCAGCGGCTTCTTTAT 1138
Query 1121 TGTCATTCGTTGGTGTATCTATTCTCATCTCAGTGCCCCTATATGAGCGTGTATTTCTCC 1180
|||||||| | |||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 1139 TGTCATTCATCGGTGTATCGATTCTCATCTCAGTGCCGATCTATGAGCGTGTATTTCTCC 1198
Query 1181 CGATAGCTAGGAA-GATTACCAAAAAGCCTTTTGGGATCACAATGCTCCAAAGGATAGGA 1239
||||||| | ||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1199 CGATAGCCA-GAATGATTACCAAAAAGCCTTTTGGGATCACAATGCTCCAGAGAATAGGA 1257
Query 1240 GCTGGAATGGTGCTTTCAGTCTTCAATATGATGCTCGCTGCATTAGTAGAATCAAAACGG 1299
||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||
Sbjct 1258 ACTGGAATGGTGCTTTCAGTCTTCAATATGATGCTCGCGGCATTGGTAGAAACGAAACGG 1317
Query 1300 CTAAAAATCGCTAGGGAACACGGGCTAGTGGACAAGCCGGACGTGACCGTTCCAATGTCC 1359
||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1318 CTAAATATTGCTAGGGAACACGGGCTCGTGGACAAGCCGGACGCGACCGTTCCAATGTCC 1377
Query 1360 ATATGGTGGTTCGTCCCTCAGTATTTGCTACTCGGGATGATCGATCTGTTCTCTATGGTG 1419
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1378 ATATGGTGGTTCGTCCCTCAGTATTTGCTACTCGGGATGATCGATGTGTTCTCTCTGGTG 1437
Query 1420 GGAACACAAGAATTCTTCTACGACCAAGTCCCAACGGAGCTAAGGAGCATTGGTCTCTCG 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GGAACACAAGAATTCTTCTACGACCAAGTCCCAACGGAGCTAAGGAGCATTGGTCTCTCG 1497
Query 1480 CTTTCTCTGAGTGCGATGGGTCTTTCAAGCTTCTTGAGTGGTTTTCTCATCAGTTTGATT 1539
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 1498 CTATCTTTGAGTGCGATGGGTCTTTCGAGCTTCTTGAGTGGTTTTCTCATCACTGTGATT 1557
Query 1540 GATTGGGCTACGGGAAAAGACGGCTGGTTCAACTCTAACTTGAACCGAGCCCATGTGGAT 1599
||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 1558 GATTGGGCTACCGGAAAAGACGGCTGGTTCAACACTAACCTGAACCGAGCCCATGTCGAT 1617
Query 1600 TACTTTTATTGGTTGCTCGCTGCTTTCACGGCCATTGCTTTCTTTGCGTTCTTGTTCATC 1659
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1618 TACTTTTATTGGTTACTCGCCGCTTTCACAGCCATTGCTTTCTTTGCGTTCTTGTTCATC 1677
Query 1660 TCCAAGATGTATGTGTATCGTCGGCTAGAC 1689
||||||||||||||||||||||||||||||
Sbjct 1678 TCCAAGATGTATGTGTATCGTCGGCTAGAC 1707
> Ahg472495 jgi|Araly1|472495|fgenesh2_kg.1__2449__AT1G22550.1
Length=1840
Score = 1465 bits (793), Expect = 0.0
Identities = 1438/1736 (83%), Gaps = 98/1736 (6%)
Strand=Plus/Plus
Query 6 GATACCAGAGGAAGAAGTTGCACTCT-TAGAAGATTA-CGTTAGCGATTCCGTCGACCAC 63
|||| | || ||||||| |||||| | ||||||| || ||| ||||| || |||||||||
Sbjct 82 GATAGCTGAAGAAGAAGCTGCACT-TATAGAAGA-TACCGTCAGCGACTCGGTCGACCAC 139
Query 64 CGTGGATTTCCCGCCGGAAAATCTTCCACCGGCGGATGGAGATCGGCCTGGTTCATTATA 123
|||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 140 CGTGGACTTCCCGCCGGAAAATCTTCCACCGGTGGATGGAGATCCGCCTGGTACATTATA 199
Query 124 GGTGTGGAAGTTGCAGAGAGGTTTGCTTACTTTGGGATTGCCTGCAATTTGATTACTTAC 183
||||||||||||| ||| || || |||||||||||||||| | ||| || |||||||||
Sbjct 200 GGTGTGGAAGTTGGAGAAAGATTCGCTTACTTTGGGATTGGTTCCAACTTAATTACTTAC 259
Query 184 CTCACCGGACCTCTCGGACAATCGACGGCGAAAGCTGCCGTGAACGTGAACACGTGGTCG 243
||||||||||||||||||||||| ||||| | || ||||||||||||||||| |||||
Sbjct 260 CTCACCGGACCTCTCGGACAATCAACGGCCACCGCCGCCGTGAACGTGAACACATGGTCA 319
Query 244 GGAACTGCCTCTATACTTCCTATTTTAGGAGCTTTCGTAGCTGACGCTTATCTTGGTCGT 303
||||| || || || |||||| |||||||||||||| | || || |||||||||||||||
Sbjct 320 GGAACCGCTTCGATGCTTCCTGTTTTAGGAGCTTTCATTGCAGATGCTTATCTTGGTCGT 379
Query 304 TACCGTACTATTGTCGTAGCTTCCCTCATCTACATA-TTGGGGCTAGGACTATTGACGTT 362
|||||||| ||||| | |||||||||||||||||| |||| |||||||||||||| ||
Sbjct 380 TACCGTACCATTGTTATTGCTTCCCTCATCTACATACTTGGA-CTAGGACTATTGACCTT 438
Query 363 ATCAG-CT-TCTTTAATCATAATGGGATTATCTAAGCAACGTAACGACGCTTCTGCTAAA 420
||| | || |||| |||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 439 ATC-GTCTATCTT-AATCCTAATGGGATTATCTGAGCAACGTAACGATGCTTCTGCTAAA 496
Query 421 CCATCTATTT-GGGTTAATACACTT-TTCTTCTGTTCTCTGTATTTGGTGGCGATCGGAC 478
|| | | ||| |||| |||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 497 CCGT-TGTTTTGGGTGAATATA-TTATTCTTTTGTTCTCTGTATTTGGTGGCGATCGGAC 554
Query 479 AAGGTGGACACAAACCGTGTGTTCAAGCGTTTGGTGCGGACCAGTTTGATGCTG-AAGAT 537
|||| |||||||| ||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 555 AAGGCGGACACAAGCCGTGTGTTCAGGCGTTTGGTGCGGACCAGTTTGATG-TGGAAGAT 613
Query 538 CCGAAGGAG-GTAATA-GCGAGAGGGTCGTTTTTCAATTGGTGGTTCTTGAGTTTATCTG 595
|| |||||| | |||| | ||||| |||||||||||||||||||||||||||||||| |
Sbjct 614 CCAAAGGAGAG-AATAAGT-AGAGGATCGTTTTTCAATTGGTGGTTCTTGAGTTTATCCG 671
Query 596 CGGGAATAAGCATA-TCGATTATTGTGGTCGCTTATGTTCAAGAAAATGTTAATTGGGCG 654
| ||||||| | | || ||||| ||||| | |||||||||||| |||||||||||||||
Sbjct 672 CAGGAATAA-CTTTGTCCATTATCGTGGTGGTTTATGTTCAAGACAATGTTAATTGGGCG 730
Query 655 TTTGGGTTTGGGATTCCTTGTTTGTTTATGGTTATGGCTCTTGCTATCTTCTTGCTCGGG 714
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 731 CTTGGGTTTGGGATCCCTTGTTTGTTTATGGTTATGGCTCTTGCTCTCTTTTTGCTTGGA 790
Query 715 AGGAAGA-TATATAGATACCCAA-AGGGACATCATGAGGAGGTTAATAGTAGTAACACTT 772
|| || | | ||||||||||||| | | ||||||| ||| || | || ||| |||
Sbjct 791 AGAAAAACT-TATAGATACCCAAGAAT-AGATCATGAAGAG---AAGA--AG-AACGCTT 842
Query 773 TTGCAAGAATCGGTAGAGTTTTTGTTATTG-CGTTCAAGAATCGGAAACTGAGGTTAGAA 831
|||||||||||||| ||||||| || || ||||||||||||||||||||| |||| |
Sbjct 843 TTGCAAGAATCGGTCGAGTTTTC-TTGGTGGCGTTCAAGAATCGGAAACTGAAGTTA-A- 899
Query 832 CATTCTAGTTTGGAATTGGATCAAGGTCTATTGGAGGATGGT-CAGTCCGAGAAACGTAA 890
|| | | || || | ||| | | | ||| |||||| | ||| |||||| ||||
Sbjct 900 CA--C-A-TTCGG----G--TCA-G-T-T---GGAAGATGGTTC-GTCAGAGAAATGTAA 942
Query 891 AG-ATCGGCTC-AATTTCCTAGCAAAAGCAAT-GATCTCAAGAGAAGGTG-T-T-GAGCC 944
|| | ||||| |||| |||||||||||| | | | ||| ||||||| | | | |||||
Sbjct 943 AGGA-CGGCTTGAATT-CCTAGCAAAAGCG-TCGCTATCAGGAGAAGGAGGTCTAGAGCC 999
Query 945 ATGTAGTGGTAGGGACGTGGATGACGCGAAGGCTTTGGTAAGGCTTATTCCGATA-TGGA 1003
|||| | | ||||||||||| ||| ||| |||||||||||| |||||||| || ||||
Sbjct 1000 CTGTAATAGCAGGGACGTGGAAGACACGATGGCTTTGGTAAGACTTATTCC-ATTGTGGA 1058
Query 1004 TCACATACG-TGGTGAGCACGATTCCGTACGCTCAGTACA-TAACTTTCTTCACGAAGCA 1061
|||||| || |||||||||||||||| |||||||| ||| || |||||||||| |||||
Sbjct 1059 TCACAT-CGGTGGTGAGCACGATTCCTTACGCTCAATACGCTA-CTTTCTTCACAAAGCA 1116
Query 1062 AGGGGTCACGGTGGACAGAAGAATCTTACCGGGAGTAGAAATTCCAGCGGCTTCTTTATT 1121
||| || ||||||||||||| |||||| ||||| | ||||| || |||||||||| |
Sbjct 1117 AGGCGTTACGGTGGACAGAAAAATCTTGCCGGGTTTGGAAATCCCTCCGGCTTCTTT-TC 1175
Query 1122 -GTCATTCGTTGGTGTATCTATTCTCATCTCAGTGCCC-CTATATGAGCGTGTATTTC-T 1178
| | | | ||| |||| ||| |||||||||| || || ||||||||||| |||| |
Sbjct 1176 AGGCGCTAATCGGTTTATCGATTTTCATCTCAGTTCCGACT-TATGAGCGTGT-TTTCCT 1233
Query 1179 CCCGATAGCTAGGAA-GATTACCAAAAAGCCTTTTGGGATCACAATGCTCCAAAGGATAG 1237
||| ||||||| | ||||||||||||||||| |||||||||||||| || || ||||
Sbjct 1234 TCCGTTAGCTAG-ATTGATTACCAAAAAGCCTTCAGGGATCACAATGCTACAGAGAATAG 1292
Query 1238 GAGCTGGAATGGTGCTTTC-AGTCTTCAATATGATGCTCGCTGCATTAGTAGAA-TCAAA 1295
|||||||||||||||| || || ||| |||||| || | || ||||| |||||| | |||
Sbjct 1293 GAGCTGGAATGGTGCTCTCTAG-CTTAAATATGGTGGTTGCAGCATTGGTAGAAATGAAA 1351
Query 1296 ACGGCTAAAAATCG-CTAGGGAACACGGGCTAGTGGACA-AGCCGGACGTGACCGTTCCA 1353
||||| | | || ||| |||||| ||||| ||||| | | ||||||| ||| | |||
Sbjct 1352 -CGGCTCGAGA-CGGCTAAGGAACATGGGCTTGTGGATAGA-CCGGACGCAACCATCCCA 1408
Query 1354 ATGTCCATATGGTGGTTCGTCCCTCAGTATTTGCTACTCGGGATGATCGATCTGTTCTCT 1413
|||||||||||||||||||| ||||||||||| || ||||||||||||||| | |||||
Sbjct 1409 ATGTCCATATGGTGGTTCGTTCCTCAGTATTTACTGCTCGGGATGATCGATGTATTCTC- 1467
Query 1414 A-TGGTGGGAACACAAGAATTCTTCTACGACCAAGTCCCAACGGAGCTAAGGAGCATTGG 1472
| | || || || |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1468 ACTAGTAGGTACTCAAGAATTCTTCTACGACCAAGTCCCCACGGAGCTGAGGAGTATTGG 1527
Query 1473 TCTCTCGCTTTCTCTGAGTGCGATGGGTCTTTCAAGCTTCTTGAGTGGTTTTCTCATCAG 1532
|||| | |||||| |||| || ||||||||| | |||||||||||||||||||| ||||
Sbjct 1528 TCTCGCACTTTCTTTGAGCGCAATGGGTCTTGCCAGCTTCTTGAGTGGTTTTCTAATCAC 1587
Query 1533 TTTGATTGATTGGGCTAC-GGGAAAA--GACGG------CTGGTTCAACTCTAA-CTTGA 1582
| ||||| ||||||| || ||||||| | || |||||||||| |||| || ||
Sbjct 1588 TGTGATTAATTGGGCGACCGGGAAAAATGGTGGTGGTAGCTGGTTCAACACTAATCT-GA 1646
Query 1583 ACCGAGCCCATGTGGATTACTTTTATTGGTTGCTCGCTGCTTTCACGGCCATTGCTTTCT 1642
||||||||||||| ||||| ||||| |||||||| || |||||||| ||||||| ||||
Sbjct 1647 ACCGAGCCCATGTCGATTATTTTTACTGGTTGCTTGCCGCTTTCACCGCCATTGGGTTCT 1706
Query 1643 TTGCGTTCTTGTTCATCTCCAAGATGTATGTGTATCGTCGGCTAGACCAAGTCTAA 1698
| ||||| |||||| |||||| | ||||||||||||| ||| |||| ||| |||||
Sbjct 1707 TGGCGTTTTTGTTCTTCTCCAGGCTGTATGTGTATCGCCGGGTAGATCAAATCTAA 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5