BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22590.2

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472497 jgi|Araly1|472497|fgenesh2_kg.1__2451__AT1G22590.1         673    0.0  


> Ahg472497 jgi|Araly1|472497|fgenesh2_kg.1__2451__AT1G22590.1
Length=724

 Score =  673 bits (364),  Expect = 0.0
 Identities = 478/530 (90%), Gaps = 19/530 (4%)
 Strand=Plus/Plus

Query  209  GGTTAAGCGAACTTCCGGTAGAGAAGCAGACCAAATACATGATGGACCAGAAGGATCTCA  268
            |||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct  176  GGTTAAGCGAGCTTCCAGTGGAGAAACAGACCAAATACATGATAGACCAGAAGGATCTCA  235

Query  269  TGAACAAGATGATCCAAGACGCAGAGAAGAAGTTGGAGAAGGAGAAGATGCATACTCGTG  328
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  236  TGAACAAGATGATCCAAGACGCAAAGAAGAGGTTGGAGAAGGAGAAGATGCATACTCGTG  295

Query  329  CGATGAAACTTGGGTTAATGGCTGGGTCTAATGATCTAATCACCGATACTGATTGTTCGG  388
            | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  296  CAATGAAACTTGGGTTAATGGCTGCGTCTAATGATCTAATCACCGATACTGATTGTTCGG  355

Query  389  AGGAACTGGCCAGAGCAGCTGATGTGGTTGATAAGAAGCTCAAAGCCATCAGAGAGAGAA  448
            |||||||||||| ||| || ||||||||||||||||||| ||||||||||| ||||||||
Sbjct  356  AGGAACTGGCCAAAGCGGCCGATGTGGTTGATAAGAAGCACAAAGCCATCATAGAGAGAA  415

Query  449  TCAAGGCTGTTGAAGCAGGAGCACCAATCATCAAGAGAGACTAGGATGATGTTTTCAAAT  508
            ||||||||||  ||||||||||||||||| | |||||||| ||||||| | ||| |||||
Sbjct  416  TCAAGGCTGTAAAAGCAGGAGCACCAATCCTTAAGAGAGAGTAGGATG-T-TTT-CAAAT  472

Query  509  AAC-TTCTTATCATT-TTTATTTCATGGTTTTTAATTATTTTCAGATTAAGATGGTTT-C  565
            ||  || ||||| || ||||||||||| ||||||||| |||||| ||||||||||||| |
Sbjct  473  AATATT-TTATC-TTGTTTATTTCATGCTTTTTAATTGTTTTCACATTAAGATGGTTTGC  530

Query  566  ---G-ATTGATGGTGTTTAAAGTTCTGTTCAATGATTTGCTTTTGCACTCT--AG--GAA  617
               | ||||||| |||| ||| || ||||| ||||||||||||||||||||  |   |||
Sbjct  531  TTTGGATTGATGATGTTAAAAATTATGTTCTATGATTTGCTTTTGCACTCTTCATCAGAA  590

Query  618  GGATTAGGA--GAATGATATGAATCTCTTTGGCCTTTGTATGGTGTAATATGATCTTTTC  675
            |||||||||  |||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct  591  GGATTAGGATCGAATGATATGAATCTCTTTGGCCTTTGTGTGGTGTAATATGATATGTTC  650

Query  676  AGTTTATGACCAGATTTGTTTTATATTTTAGGAAGATTTTCTCCCTTATA  725
             |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  651  GGTTTATGACCAGATTTGTTTTATATTTT-GGAAGATTTTCTCCCTTATA  699



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26686041900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5