BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22600.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472499 jgi|Araly1|472499|fgenesh2_kg.1__2453__AT1G22600.1 1506 0.0
> Ahg472499 jgi|Araly1|472499|fgenesh2_kg.1__2453__AT1G22600.1
Length=1279
Score = 1506 bits (815), Expect = 0.0
Identities = 1093/1223 (89%), Gaps = 36/1223 (3%)
Strand=Plus/Plus
Query 1 GAGTCAGCGACACGAAGTAACATGTAAAAAATGACAAAACTATTGGCCTTGTCTCTTGTG 60
|||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 1 GAGTCAGCGACACGAAGTAACAAGT-AAAAATGAAAAAACTATTGGCCTTGTGTCTTGTC 59
Query 61 TTGAGTGCGTTATTTACAG-TGGGCCACTGCACGGGTTCTGAGGATGACATCATCGTGAG 119
|||||| |||||||| | | |||| |||||| ||| ||| |||| ||||||||||||||
Sbjct 60 TTGAGTACGTTATTTTC-GATGGGTCACTGCGCGGTTTCGGAGGGTGACATCATCGTGAA 118
Query 120 AGACGGCCACCGTGTTGTTGTGGTGGAGTACGACAGAGACGGCGAAACAAACACTAGAGT 179
||| || ||||| ||||||||||||||||||||| |||||| |||||| |||||||||||
Sbjct 119 AGATGGTCACCGCGTTGTTGTGGTGGAGTACGACGGAGACGTCGAAACCAACACTAGAGT 178
Query 180 CTTGATTTCACCTCCGGGgaaagaagtagatcagaagagcagagacgaaggagaagtgtt 239
|||||||||||||||||| ||||||| | | ||||||| ||||||||||| ||||||||
Sbjct 179 CTTGATTTCACCTCCGGGAAAAGAAG-A-A-GAGAAGAGAAGAGACGAAGGGGAAGTGTT 235
Query 240 tggaaatgagaagagagaaACGGCGTCGTCTCTTCCCGAAGAAGAGGAGCGTGAACACCA 299
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 236 TGGAAATGAGAAGAAAGAAACGGCGTCGTCTCTTCCAGAAGAGGAGGAGCGTGAACACCA 295
Query 300 CGCGACGCCAGGGGAACTTATATGCGATGCAATTGGTAAGTGTAAGCACAAGCTGGGGAC 359
|||| ||||||||||||||||||||||||| || |||||||||||||||||| ||| |||
Sbjct 296 CGCGTCGCCAGGGGAACTTATATGCGATGCGATCGGTAAGTGTAAGCACAAGATGGCGAC 355
Query 360 TGTGTTAGGGAGAGTCAAAGATCGAACGGCTAGTGATCTTTCCGACGAAACGCCTGAAAT 419
|||||||||||||||||| |||||||||||||||||||||| | || || | | ||
Sbjct 356 TGTGTTAGGGAGAGTCAAGGATCGAACGGCTAGTGATCTTT-C--CG-AA-G--AG-AA- 406
Query 420 GACGGTCGCACGTGAGGCACTTGAAGTGGAAGAGAAGGTCTCCTGGAAAGCCCGTGAAGC 479
|| | | ||||||||||| ||| |||||||| |||||||| ||| ||| | ||||||
Sbjct 407 GA---TAGGACGTGAGGCACGTGACGTGGAAGAAAAGGTCTCAGGGACAGCACATGAAGC 463
Query 480 TAGGGGAAA-GGTAAACGAGAGGGCCACAAAGAAGGCTCATAGGGTCCAAAAAGTTTTGG 538
|| ||||| ||| || || |||||||||||||| |||||||||||||||||||||||||
Sbjct 464 TA-AGGAAACGGTGAAGGAAAGGGCCACAAAGAAAGCTCATAGGGTCCAAAAAGTTTTGG 522
Query 539 AGAAGGTAC--AGATCGCGGTGCGGGGGATAGGAACGGTGGTTGCGACGGCGCTGGGGCT 596
|||| | | || ||||||||||||||||||| |||| ||||||| |||| ||||||||
Sbjct 523 AGAA--TTCGAAGGTCGCGGTGCGGGGGATAGGGACGGCGGTTGCGGCGGCTCTGGGGCT 580
Query 597 GACGAAGATCGGGAGTGTGGTGGGAATTGTCGGGATCGCGGCGGCGTATGGGATGTGCGT 656
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 581 GACGAAGATCGGGAGCGTGGTGGGAATTGTTGGGATCGCGGCAGCGTATGGGATGTGCGT 640
Query 657 GTGGGTGACGTTTGTGTCGGGCTACGTGTTGGCTTCGGTTCTTGGGGAGCAGCAATTCGG 716
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 641 GTGGGTGACGTTCGTGTCGGGCTACGTGTTGGCTTCGGTGCTTGGGGAGCAGCAATTCGG 700
Query 717 TGTGGTGCAGAGCAAGATGTATCCGGTGTACTTCAAGGCAGTCTCTGTAGGGATTTTGGT 776
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 701 TGTGGTGCAGAGCAAGATGTATCCGGTGTACTTCAAGGCAGTCACTGTAGGGATTTTGGT 760
Query 777 TGGGTTGTTAGGACACGTCAT-AGGCCGACGCCGGAAGGTTTTTACCGATGCGGTGGATA 835
|||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||||
Sbjct 761 AGGGTTGTTAGGACACGTCATCAG-CCGGCGCCGGAAGGTTTTTACCGATGCCGTGGATA 819
Query 836 TGTGGCAATCCGTTAACCTCTTGTCCTCTATCTTGATGGTCGAAGCTAATGCGTCATTTG 895
|||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 820 TGTGGCAAGCCGTTAACCTCTTGGCCTCGATCTTGATGGTCGAAGCTAATGCGTCATTTG 879
Query 896 TTTACACACGAGCCACCAAGGCCATGTTTGAGCTGATAAAAGCTGAAAAGGAAGATGGAA 955
|| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 880 TTGACCCACGAGCCACCAAGGCAATGTTTGAGCTGATAAAAGCTGAAAAGGAAGAAGGAA 939
Query 956 GAGGATTTGACACGTCAGACCAGTCACAGTCTAGTGAATCTGCCGGTCGAACCAGAGGAA 1015
||||| |||| |||||||| | |||||||||||||| | || | |||||||||||| |
Sbjct 940 GAGGACTTGATACGTCAGAG-A--CACAGTCTAGTGAAACAGCAGCTCGAACCAGAGGTA 996
Query 1016 AGAAGAAGGTTACAGAGAAGACGGATGAGGATGTGGTTAAGCAGAGACTGACAAAGCTGA 1075
||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||| ||||
Sbjct 997 AGAAGAAGGTTACAGAGAAGATGGATCAGGATGCGGTGAAGCAGAGACTGACAAATCTGA 1056
Query 1076 GCGAGAGGATGCGTAAGTTAAATGCGTACTCTTCGCGGCTAAATTTACTTACTCTCATGT 1135
||||||||||| || ||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1057 GCGAGAGGATGTATAGGTTAAATGCGTACTCGTCGCGGCTAAATTTACTAACTCTGATGT 1116
Query 1136 CTCTCACTTGGCACTTTGTGTACCTTGGCTACCGACTTAGCCTTACTTGTTGA--G--G- 1190
|||| ||||||||||||||||| || ||| | ||||||||||||||||||||| | |
Sbjct 1117 CTCTTACTTGGCACTTTGTGTATCTCGGCGATCGACTTAGCCTTACTTGTTGACTGTTGA 1176
Query 1191 G--ATCAAGCCACTGATActtta 1211
| ||||||||||||||| ||||
Sbjct 1177 GGGATCAAGCCACTGATAGTTTA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5