BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22640.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 1421 0.0
Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 394 7e-109
Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 122 4e-27
Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 93.5 3e-18
> Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1
Length=980
Score = 1421 bits (769), Expect = 0.0
Identities = 931/1003 (93%), Gaps = 35/1003 (3%)
Strand=Plus/Plus
Query 1 CTACAGGAACTCTCTTCCTTGCaaaaaaaaTAAAACACTATTTCCTCCAAATACACGTAG 60
|||||||||||||||||||| | |||||||| | | | | | | | |||||| |
Sbjct 1 CTACAGGAACTCTCTTCCTT-C-AAAAAAATTCCTC-CAAATACAT--ACATACAC--AT 53
Query 61 AGAGATACATATATACATATAGAGATCAACAAAGATGGGAAGATCACCATGCTGCGAGAA 120
||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 54 AGAGATACATACAT--ATATAGAGATC-A-AAAGATGGGAAGATCACCATGCTGCGAGAA 109
Query 121 AGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTTGTTGATTACAT 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 110 AGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTCGTTGATTACAT 169
Query 181 CCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCTGGATTACAAAGATG 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 170 CCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCCGGATTACAGAGATG 229
Query 241 TGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAA 289
Query 301 TTTTACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTCGGTAACAAATG 360
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 290 TTTCACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTTGGTAACAAATG 349
Query 361 GTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAA 409
Query 421 CACTCATATCAAGAGGAAGCTTCTCAGCCGTGGGATTGATCCAAACTCTCACCGTCTGAT 480
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 410 CACTCATATCAAGAGGAAGCTTCTTAGCCGTGGGATTGATCCAAACACTCATCGTCTGAT 469
Query 481 CAACGAATC--C-GTCGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTATACA 537
||||||||| | || ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 470 CAACGAATCGGCAGTAGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTTTAAA 529
Query 538 TCTTGATTTCT-CTGGACCGGTTAAACCGGAACCGGTGCGTGAAGAGATTGGTATGGT-T 595
||||||||| | | |||| |||||||||||||||||| || |||||||||||| ||| |
Sbjct 530 TCTTGATTT-TGCCGGACAGGTTAAACCGGAACCGGTACGGGAAGAGATTGGT--GGTAT 586
Query 596 -AATAATTGTGA-GAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATT 653
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TAATAATTGT-ACGAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATT 645
Query 654 GGGTGTTGAATTTGGAACTCTCTGTTGGACCGAGTTATCGGTACGAGTCGACTCGGAAAG 713
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 646 GGGTGATGAATTTGGAACTCTCCGTTGGACCGAGTTATCGGTACGAGTCCACTCGGAAAG 705
Query 714 TGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGTTCCGAGTTGTTT-GGAGCT 772
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 706 TGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGATCCGAGTTGTTTAGGA-CT 764
Query 773 CATGAGAGTGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCGTAATGAGTCGTGT 832
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 765 CA-GAG--TGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCATAATGAGTCGTGT 821
Query 833 CGGAATTGTCGGGTTTCTGATGTTAGAACTCATTAGAGAGTCAATCGAGAATTCTTTAGG 892
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 CGGAATTGTCGGGGTTCTGATGTTAGAACTCATTAGAGAGTC----GAGAATTCTTTAGG 877
Query 893 AATCTTTTTATATATTTAGATCGTCAATTGTGttt-tttttttGTT-CACATTTGTTATG 950
||||||||||||||||||||| || ||||||| || ||||||| || |||||||||||||
Sbjct 878 AATCTTTTTATATATTTAGATTGTTAATTGTGCTTCTTTTTTTCTTTCACATTTGTTATG 937
Query 951 TAAC--ATCAAGTAAGAAACTAGCATAATTATTTGATGGCAAA 991
|||| ||||||||||||||||| |||||||||||||||||||
Sbjct 938 TAACGCATCAAGTAAGAAACTAGGATAATTATTTGATGGCAAA 980
> Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1
Length=850
Score = 394 bits (213), Expect = 7e-109
Identities = 336/397 (85%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 95 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 154
||||||||||| || || || || |||||||||| ||||||||||||||||||||||||
Sbjct 47 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 106
Query 155 GAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCTCTC 214
|||||||| | ||| || ||||| || ||||| |||||||||||||| |||||||||||
Sbjct 107 GAAGATCAACGTCTCGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTT 166
Query 215 CCTCGCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGATGAATTAT 274
||| |||||||||| | |||||||| |||||||||||||||||||| |||||
Sbjct 167 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 226
Query 275 CTAAGACCAGATCTCAAAAGAGGCAATTTTACTGAAGAAGAAGATGAACTCATCATCAAG 334
|| | || ||||| ||| | || ||||||||||| ||||||||| || ||||||||||
Sbjct 227 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAA 286
Query 335 CTCCATAGCTTGCTCGGTAACAAATGGTCTTTAATAGCTGGGAGATTACCAGGAAGAACA 394
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 287 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACA 346
Query 395 GATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTCAGCCGTGGG 454
||||| || |||||||| ||||||||||||||||| || || |||||||| || | ||||
Sbjct 347 GATAATGAAATCAAGAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGGG 406
Query 455 ATTGATCCA-AACTCTCACCGTCTGATCAACGAATCC 490
||||||||| || |||| |||| ||| ||||| |||
Sbjct 407 ATTGATCCACAAA-CTCATCGTCCGATTAACGATTCC 442
> Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1
Length=1186
Score = 122 bits (66), Expect = 4e-27
Identities = 286/387 (74%), Gaps = 36/387 (9%)
Strand=Plus/Plus
Query 95 ATGGGAAGATCACCATGCTGCGAGAA-AGCTCACATGAACAAAGGAG-CTTGGACTA-AA 151
|||||||| ||||| || |||||||| | | | | || ||||| | | ||||| |
Sbjct 96 ATGGGAAGGTCACCTTGTTGCGAGAAGAACGGGC-TCAAGAAAGG-GCCATGGAC-ATCT 152
Query 152 GAAGAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCT 211
|||||||| ||| |||||||| || |||| ||||| ||| | ||| |||| || |
Sbjct 153 GAAGAAGACCAGAAGCTTGTTGACTATATCCACAAACATGGTTATGGTAACTGGAGAACC 212
Query 212 CTCCCTC-GCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGA-TGA 269
||||| | ||||| || ||||||||||| || |||||||| || || |||| | |
Sbjct 213 CTCCC-CAAAAATGCTGGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACT-A 270
Query 270 ATTATCTAAGACCAGATCTCAAA-AGAGGCAA---T-T-TTACTGAAGAAGAAGATGAAC 323
||||||| |||||||| | ||| |||| || | | || | || |||||||| |||
Sbjct 271 ATTATCTCCGACCAGATAT-AAAGCGAGG-AAGGTTCTCTTTC-GAGGAAGAAGA--AAC 325
Query 324 TCATCA-TCAAGCTCCATAGCTTGC-TCGGTAACAAATGGTCTTTAATAGCTGG-GAGAT 380
||| | || |||| |||||||| | | || ||||| ||||| || || || | |
Sbjct 326 -CATTATTC-AGCTTCATAGCTT-CTTAGGAAACAAGTGGTCGGCGATTGC-GGCCCGTT 381
Query 381 TACCAGGAAGAACAGATAACGAGATCAAGAACTAT-TGGAACACTCATATCAAGAG-GAA 438
| || |||||||||||||||||||||||||||| | |||||||||||||| |||| |||
Sbjct 382 TGCCTGGAAGAACAGATAACGAGATCAAGAACT-TCTGGAACACTCATAT-AAGAAAGAA 439
Query 439 GCTT-CTCAGCCGTGGG-ATTGATCCA 463
| || || || |||| |||||||||
Sbjct 440 G-TTACTTAGAA-TGGGGATTGATCCA 464
> Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1
Length=1149
Score = 93.5 bits (50), Expect = 3e-18
Identities = 87/104 (84%), Gaps = 6/104 (6%)
Strand=Plus/Plus
Query 323 CTCATCAT-CAAGCTCCATAGCT-TGCTCGGTAACAAATGGTCTTTAATAGCTG-GGAGA 379
|||||||| ||| |||||| || |||||| ||||||||| || || |||| ||
Sbjct 250 CTCATCATACAA-CTCCAT-TCTCAGCTCGGCAACAAATGGGCTCGCATGGCTGCTCAG- 306
Query 380 TTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACAC 423
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 307 TTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACAC 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5