BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22650.1
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472504 jgi|Araly1|472504|fgenesh2_kg.1__2458__AT1G22650.1 2929 0.0
> Ahg472504 jgi|Araly1|472504|fgenesh2_kg.1__2458__AT1G22650.1
Length=1871
Score = 2929 bits (1586), Expect = 0.0
Identities = 1783/1877 (95%), Gaps = 18/1877 (1%)
Strand=Plus/Plus
Query 4 CTTCTTTCTATATTTATCACATTTTTCTTCACCGGCTGATTTGTTTGCCCGGAGATTATC 63
||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 1 CTTCTTTCTATCTCTATCACA--TTTCTCCACCGGCTGATTTGTTTGCCCGGAGATTACC 58
Query 64 TCTCCGTCGTAATTAAGAT-C-TATACACACAGAAACACAAAGTTAAAGAATCCTCATGG 121
||||||||||||||||| | | | || | || ||||||||||||||||||||| ||||
Sbjct 59 TCTCCGTCGTAATTAAGGTCCGTTTA-TGAGAG-AACACAAAGTTAAAGAATCCTTATGG 116
Query 122 AAGGAGTAAACTCTTCAAGCTCTATATCCGACCTAGACGAATTGGCTCGGTTACTTGACC 181
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 117 AAGGAGTAAACTCTTCAAGCTCTATATCCGACCTAGACGACTTGGCTCGGTTACTTGACC 176
Query 182 GGCCGAGGGTAAATATTGAACGGAAAAGATCGTTTGACGAGAGGTCCTTCAGCGAAATGG 241
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 177 GGCCGAGGCTAAATATTGAACGGAAAAGATCGTTTGACGAGAGGTCGTTCAGCGAAATGG 236
Query 242 GAATCTTCGACAACGTTAATTCTCCCGGAGGATGGGAAACTCCGGTGTCTTCGGCTAGAA 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 237 GAATCTTCGACAACGTTAATTCTCCCGGAGGATGGGAAACTCCGGTATCTTCGGCTAGAA 296
Query 302 ACTCGTTTGAGCCACATCCTATGGTTGCAGAGGCTTGGGATGCTTTGAGACGATCATTGG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACTCGTTTGAGCCACATCCTATGGTTGCAGAGGCTTGGGATGCTTTGAGACGATCATTGG 356
Query 362 TTTACTTTCGTGGCCAACCGGTTGGTACTATCGCTGCTTATGACCATGCTACTGAGGAAG 421
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 357 TTTACTTTCGTGGCCAACCGGTTGGTACTATCGCTGCTTATGACCATGCTTCTGAAGAAG 416
Query 422 TCTTGAATTATGATCAGGTTTTCGTAAGAGACTTTGTTCCAAGTGCACTAGCTTTTCTCA 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTTGAACTATGATCAGGTTTTCGTAAGAGACTTTGTTCCAAGTGCACTAGCTTTTCTCA 476
Query 482 TGAACGGAGAACCAGACATAGTTAAAAACTTTCTCCTCAAGACAATTCAAATCCAAGGAA 541
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 TGAATGGAGAGCCAGACATAGTTAAGAACTTTCTCCTCAAGACAATTCAAATCCAAGGAA 536
Query 542 GGGAGAAAAGAATAGACCGATTCAAGCTCGGTGAAGGCGCAATGCCGGCTAGTTTCAAGG 601
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 537 GGGAAAAAAGAATAGACCGGTTCAAGCTCGGTGAAGGCGCAATGCCGGCTAGCTTCAAGG 596
Query 602 TCATTCACGACCCGATCAAGGAAACCGACTCTATCAAT-GCTGACTTTGGCGAGAGCGCG 660
|||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||
Sbjct 597 TCATTCACGACCCGATCAAGAAAACCGACACTATCA-TCGCTGACTTTGGCGAGAGCGCG 655
Query 661 ATTGGAAGAGTGGCTCCGGTGGACTCAGGTTTCTGGTGGATCATTCTCCTTAGAGCCTAC 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATTGGAAGAGTGGCTCCGGTTGACTCAGGTTTCTGGTGGATCATTCTCCTTAGAGCCTAC 715
Query 721 ACAAAATCCACCGGAGACACTTCTCTAGCTGAAACATCTGAATGTCAAAAGGGAATGAGA 780
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 ACAAAATCCACCGGAGACACTTCTCTAGCTGAAACACCTGAATGTCAAAAGGGAATGAGA 775
Query 781 CTCATTCTCTCTCTTTGTCTCTCCGAAGGTTTCGATACTTTCCCTACCTTACTTTGTGCT 840
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 776 CTCATTCTCTCTCTTTGTCTCTCTGAAGGTTTCGATACTTTCCCTACATTACTTTGTGCT 835
Query 841 GATGGCTGCTCCATGATCGATCGAAGAATGGGGGTTTACGGGTATCCGATAGAGATCCAA 900
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 836 GATGGCTGCTCCATGGTCGATCGAAGAATGGGGGTTTACGGGTACCCGATAGAGATCCAA 895
Query 901 GCTCTCTTCTTCATGGCTCTTAGATCAGCAATGTCGATGCTAAAGCACGACGCGGAAGGT 960
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 896 GCTCTCTTCTTCATGGCTCTTCGATCAGCAATGTCGATGCTAAAACACGACGCGGAGGGT 955
Query 961 AAAGAGTTCATGGAGAGGATAGTGAAGCGGCTACACGCGCTTAGCTTCCACATGAGAAGT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAAGAGTTCATGGAGAGGATAGTGAAGCGGCTACACGCGCTTAGCTTCCACATGAGAAGC 1015
Query 1021 TATTTCTGGCTCGATTTTCAGCAGCTCAACGACATTTACCGTTACAAAACAGAAGAGTAC 1080
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1016 TATTTCTGGCTCGATTTTCAGCAGCTCAACGACATTTACCGTTATAAAACAGAGGAGTAC 1075
Query 1081 TCGCACACAGCGGTTAACAAGTTCAACGTTATCCCTGACTCGATCCCTGAGTGGGTCTTC 1140
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1076 TCGCACACAGCGGTCAACAAGTTCAACGTCATCCCTGACTCGATCCCTGAGTGGGTCTTC 1135
Query 1141 GATTTCATGCCTCTACGTGGCGGTTACTTTATAGGAAACGTTAGTCCAGCTCGTATGGAT 1200
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1136 GATTTCATGCCTCTACGCGGCGGTTACTTCATAGGAAACGTTAGTCCAGCTCGTATGGAT 1195
Query 1201 TTTAGGTGGTTCGCTCTAGGCAACTGCGTAGCGATCCTTGCTTCTTTAGCCACGCCTGAG 1260
|| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 TTCAGGTGGTTTGCTCTTGGCAACTGTGTAGCGATCCTTGCTTCTTTAGCCACGCCTGAG 1255
Query 1261 CAGTCGGCTTCAATCATGGACTTGATAGAGGAACGGTGGGAGGAGTTGGTCGGAGAGATG 1320
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CAGTCGGCTGCGATCATGGATTTGATAGAGGAACGGTGGGAGGAGTTGGTCGGAGAGATG 1315
Query 1321 CCGGTTAAAATTTGTCATCCGGCAATCGAGAGCCATGAGTGGAGGATTGTTACCGGTTGC 1380
|||||||| ||||||||||| || ||||||||||| |||||| |||| |||||||||||
Sbjct 1316 CCGGTTAAGATTTGTCATCCAGCGATCGAGAGCCACGAGTGGCGGATCGTTACCGGTTGT 1375
Query 1381 GACCCTAAGAATACTCGTTGGAGTTACCATAACGGTGGTTCTTGGCCAGTA-TTGTTGTG 1439
|||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1376 GACCCTAAGAATACTCTTTGGAGTTACCATAACGGTGGTTCTTGGCCAGTGCTT-TTGTG 1434
Query 1440 GCTATTAACAGCTGCATGCATAAAGACGGGACGGCCACAAATAGCAAGACGGGCCATAGA 1499
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GCTATTAACAGCTGCGTGCATAAAGACGGGACGGCCACAAATAGCAAGACGGGCCATAGA 1494
Query 1500 CCTGGCGGAAGCACGGCTGTTGAAGGATGGTTGGCCGGAGTACTACGACGGGAAATCAGG 1559
|| || || |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1495 TCTTGCCGAGGCACGGCTATTGAAGGATGGTTGGCCGGAGTACTACGACGGAAAATCAGG 1554
Query 1560 AAGGTTCATCGGAAAACAGGCGAGGAAGTTTCAGACATGGTCTATCGCCGGTTACTTGGT 1619
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1555 AAGGTTCATCGGAAAACAGGCGAGGAAGTTTCAGACATGGTCTATCGCAGGTTACTTGGT 1614
Query 1620 CGCCAAGATGTTGTTGGAAGATCCTTCTCATCTTGGAATGATCTCATTGGAAGAAGACAA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CGCCAAGATGTTGTTGGAAGATCCTTCTCATCTTGGAATGATCTCATTGGAAGAAGACAA 1674
Query 1680 ACAGACTAAACCTGTCATTAAGAGATCTTATTCTTGGACTTGATAATTTGTTGTCAATTC 1739
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 ACAGACCAAACCTGTCATTAAGAGATCTTATTCTTGGACTTGATAATTTGTTGTCAATTC 1734
Query 1740 TTTTGAGAAGAGCAGGCTAAAATTTG--A-T--CTAAATTTTGTTACACAAGTCAATGCA 1794
|||||||| | |||||||||||||| | | |||||||||||| |||||| || |||
Sbjct 1735 ATTTGAGAAAATCAGGCTAAAATTTGTTAGTGTCTAAATTTTGTTTTACAAGTTAACGCA 1794
Query 1795 TTTTGTATTATTATTGTTTCCCTTAGTGTGGAG---TAGTGGGATTATTGATAACCTCTT 1851
| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1795 TCTTGTATTATTATTGTTTTCCTTAGTGTGGAGGAGTAGTGGGATAATTGATAACCTCTT 1854
Query 1852 TGTAGACGATTTTTTCT 1868
|||||||||||||||||
Sbjct 1855 TGTAGACGATTTTTTCT 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70200321535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5