BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22651.1

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921289 jgi|Araly1|921289|scaffold_102570.1                        244    1e-64


> Ahg921289 jgi|Araly1|921289|scaffold_102570.1
Length=243

 Score =  244 bits (132),  Expect = 1e-64
 Identities = 148/156 (95%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  7    GGTCGTAGAGAGCAGGTGATTGGAGCGTGGCGTTCACGCGAAGAAAACGACATCGTTTTT  66
            |||||||||||| || ||||||||||||||  ||||||||||||||||||||||||||||
Sbjct  66   GGTCGTAGAGAGAAGATGATTGGAGCGTGGTTTTCACGCGAAGAAAACGACATCGTTTTT  125

Query  67   GAGTCTGACATGTTAATTTGGCTTAATCTCTGTCGATTGGGTCATTGGACTTTTCGCCGG  126
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  126  GAGTCTGACATGTTAATTTGGCTTAATCTCTATCGATTGGGTCATTGGACTTTTCGCCCG  185

Query  127  TTCGATCAGCTTTTTCTCGAGTTTTGTTTCGTTTAG  162
            ||||||| ||||||||||||||||||||||| ||||
Sbjct  186  TTCGATCGGCTTTTTCTCGAGTTTTGTTTCGGTTAG  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5308168279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5