BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22651.1 Length=162 Score E Sequences producing significant alignments: (Bits) Value Ahg921289 jgi|Araly1|921289|scaffold_102570.1 244 1e-64 > Ahg921289 jgi|Araly1|921289|scaffold_102570.1 Length=243 Score = 244 bits (132), Expect = 1e-64 Identities = 148/156 (95%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 7 GGTCGTAGAGAGCAGGTGATTGGAGCGTGGCGTTCACGCGAAGAAAACGACATCGTTTTT 66 |||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 66 GGTCGTAGAGAGAAGATGATTGGAGCGTGGTTTTCACGCGAAGAAAACGACATCGTTTTT 125 Query 67 GAGTCTGACATGTTAATTTGGCTTAATCTCTGTCGATTGGGTCATTGGACTTTTCGCCGG 126 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 126 GAGTCTGACATGTTAATTTGGCTTAATCTCTATCGATTGGGTCATTGGACTTTTCGCCCG 185 Query 127 TTCGATCAGCTTTTTCTCGAGTTTTGTTTCGTTTAG 162 ||||||| ||||||||||||||||||||||| |||| Sbjct 186 TTCGATCGGCTTTTTCTCGAGTTTTGTTTCGGTTAG 221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 5308168279 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5