BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22660.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335508 jgi|Araly1|335508|fgenesh1_pg.C_scaffold_1002073 2721 0.0
> Ahg335508 jgi|Araly1|335508|fgenesh1_pg.C_scaffold_1002073
Length=1812
Score = 2721 bits (1473), Expect = 0.0
Identities = 1709/1823 (94%), Gaps = 16/1823 (1%)
Strand=Plus/Plus
Query 14 ATGAGACTGTCTTCTCTTCCGATCAACACTCTCATAAATCTCCCAAAATCTCTCTTTCTA 73
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAGACTG---TCTCTTCCCATCAACACTCTCATAAATCTCCCAAAACCTCTCTTTCTA 57
Query 74 ATTTCTCCTTTTCGCTTCCGTAACCTTAATCGTTCCCTTACCGTCGCGTCTCGCATTTCA 133
|||||||||||||||| |||||||| |||||||||||| |||||||||| ||||| ||||
Sbjct 58 ATTTCTCCTTTTCGCTACCGTAACCCTAATCGTTCCCTAACCGTCGCGTTTCGCACTTCA 117
Query 134 TCAACGCTTCTTCGCGTTTCCGGTGTCTCGTCTCGTCCGTGTGGTTACTGGTTCTCGACG 193
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||
Sbjct 118 TCAACGCTTCTTCGCGTTTCCGGTGTCTCCTCTCGTCTGTGTTGTTACTGGTTCCCGACC 177
Query 194 AACGCGGCGATGACGAATGTTGGAGAGGAAGATAAGCAATCGATTCCTTCAATCGAATTG 253
|| ||| || |||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 178 AAGGCGATGACGACGAATGTTGGAGAGGACGATAAGCAATCGATTCCTCCTATCGAATTG 237
Query 254 AAGGAGAATATTGAGCTCACTGACAAAGAACGGAAAATTTTCGATCGGCTTCTTAGTACT 313
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 238 AAGGAGAATATTGAGCTCACTGAAAAAGAACGGAAAATTTTCGACCGGCTTCTTAGTACT 297
Query 314 CTCCGTTACTGTAACCTTGACACACAGCTTCGTGTCGCCGGTGGTTGGGTCCGTGATAAG 373
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCCGTTACTGTAACCTCGACACGCAGCTTCGTGTCGCCGGTGGTTGGGTCCGTGATAAG 357
Query 374 CTGCTAGGGAAAGAGAGTGATGATATTGATATAGCTATTGATAATATGTCTGGAAGTGAA 433
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 358 CTGCTAGGGAAAGACAGTGATGATATTGATATAGCAATTGACAATATGTCTGGAAGTGAA 417
Query 434 TTTCTTGATAAGTTTAAGGAATATTTATCTTCGAGAGATGAAGAAGTACAAGGCGACACT 493
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTTCTTGATAAGTTCAAGGAATATTTATCTTCGAGAGATGAAGAAGTACAAGGCGACACT 477
Query 494 GTTATTGAAAGGAACCCTGACCAATCTAAACACTTGGAGACAGCAAAGTTGCGGATTTAT 553
||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 478 GTTATTGAAAGAAACCCTGACCAATCCAAACACTTGGAGACAGCAAAGATGCGCATTTAT 537
Query 554 GACCAGTGGATAGATTTTGTTAACTTGAGAAGTGAAGAATACACAGAGAATAGTCGTATT 613
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 538 GACCAATGGATAGATTTTGTGAACTTGAGAAGTGAAGAGTACACAGAGAATAGTCGTATT 597
Query 614 CCTACAATGAAATTTGGCACCGCAAAAGATGATGCTTTTCGTAGAGATTTAACCATAAAT 673
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 CCTACAATGAAATTTGGCACCGCAAAAGAGGATGCTTTTCGTAGAGATTTAACCATAAAT 657
Query 674 AGTTTATTCTACAATATCAACTCTGGCGCAGTAGAAGACCTTACAGAAAGAGGCATCGAT 733
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 658 AGTTTATTCTACAACATCAACTCTGGCTCAGTAGAAGACCTTACAGAAAGAGGCATTGAT 717
Query 734 GACCTCAAGTCCGGAAAAATTGTTACACCCTTGCCTGCAAAAGCCACATTTTTGGATGAT 793
||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 718 GACCTCAAGTCCGGAAAGATTGTCACACCCTTGCCCGCAAAAGCTACATTTTTGGATGAT 777
Query 794 CCTTTGCGAGTTCTCCGGGCTGTTCGCTTTGGTGCAAGGTTTGGTTTTACTTTGGATGAA 853
||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||
Sbjct 778 CCTTTGCGAGTTCTCCGGGCTATCCGCTTTGGTGCAAGGTTTGGCTTTACTCTGGATGAA 837
Query 854 GAACTAAAAGAAGCTGCTTCAAGTGAGGAAGTAAGGGTAGCTCTTGGAGAAAAAATTAGC 913
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 GAACTAAAAGAAGCTGCTTCAAGTGAGGAAGTAAGGGTTGCTCTTGGAGAAAAAATTAGC 897
Query 914 AGAGAGCGGATTGGGAATGAGATTGACTTGATGATATCTGGGAATGGACCAGTTTCAGCG 973
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 898 AGAGAGCGGATTGGGAATGAAATTGACTTGATGATATCTGGGAATGGTCCAGTTTCAGCG 957
Query 974 GTTACCTATCTTTCTGACCTGAAACTATTT-AGTGTTGTCTTTGCCCTTCCCTCTTCAGC 1032
||||||||||||||||| |||||| ||||| | ||||| ||| ||||||||||||||||
Sbjct 958 GTTACCTATCTTTCTGAGCTGAAATTATTTCCG-GTTGTGTTTTCCCTTCCCTCTTCAGC 1016
Query 1033 TGAGCCTTCACCACCAGAAAATTGTGGCAGCCTCTCCCAATCCTACTTGGAAGCTATGTG 1092
||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 1017 TGAGCCTTCACCATCAGAGAATTGTGGCAGCCTCTCCCAAGCTTACTTGGAAGCTATGTG 1076
Query 1093 GAGCTTACTTAAAACACCTCGGCCAGGAAAGTTCAGTGGTGAACAAAGACGGCTTGCTCT 1152
|||| | ||| |||||||||||| |||||| ||||||| ||||||||||||||||| |
Sbjct 1077 GAGCCTGCTTCAAACACCTCGGCTAGGAAATTTCAGTGCTGAACAAAGACGGCTTGGAAT 1136
Query 1153 CTATGCTGCTATGTTTCTCCCTTTTAGGAAAACTGTATACAAGGACACTAAGGGCAAATC 1212
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 GTATGCTGCTATGTTTCTCCCTTTTAGGAAAACTGTATACAAGGACAAGAAGGGCAAATC 1196
Query 1213 GATTCCTGTTGTCAACCACATTTTTAAATTCTCCATGAAGAGGAAGACCAGTGACGCTGA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GATTCCTGTTGTCAACCACATTTTTAAATTCTCCATGAAGAGGAAGACCAGTGACGCTGA 1256
Query 1273 AACAGTTATGAATATACATCAGACCACGGAGAGATTTCGTTCGTTGATTCCTTCCCTTGA 1332
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1257 AACAGTTATGAATATACATCAGACTACGGAGAGATTTCGATCGTTGATTCCATCCCTTGA 1316
Query 1333 AGTGAAGAAAGATGTAGAACTGGACGAGCTA-ACTTGGGCCGC-TGATATTCTTGAGCAT 1390
| ||||| || || |||||||||||||| | ||||||||| | ||||| |||| ||
Sbjct 1317 GGCAAAGAACGACGTGGAACTGGACGAGCTTGA-TTGGGCCGCGT-ATATTATTGATCAC 1374
Query 1391 TGGAAATCCATCACCCTTAATGATCCAGTGATCCCAGCAACTTCAAAAATAAGAGTACTC 1450
||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1375 TGGAAGGCCATCACCCTTAATGATCCACTGATCCCAGCAACTTCGAAAATAAGAGTACTC 1434
Query 1451 ACAGGGTTTCTACTTAGAGATATTAAAGACTTCTGGCGTGTTTCTCTGTTAACATCTTTG 1510
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 ACAGGGTTTCTACTTAGAGATATTAAAGACTTCTGGCGTGTTTCTCTCTTAACATCTTTG 1494
Query 1511 TTATTGTCTGCTACGGTTGACGGTA-GCAACGATCATCAAGATATCGGGCAGCTGGACTT 1569
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1495 TTATTGTCTGCTACGGTTGACGGTATG-AACGAAGATCAAGATATCGGGCAGCTGGACTT 1553
Query 1570 CCAACTGGAAAGGATGCGAGAAACTTATCTGACAGTTGAGGCCACCATTCATGAACTGGG 1629
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1554 CCAACTGGAAAAGATGCGAGAAACTTATCTGACAGTTGAGGCCACCATTCATGATCTGGG 1613
Query 1630 TCTTGATAAG-ATCTGGGATGCAAAGCCTCTAGTCAATGGCAGGGAGATAATGCAAATTG 1688
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1614 TCTTGATA-GCATCTGGGATGCAAAGCCTCTAGTGAATGGCAGGGAGATAATGCAGATTG 1672
Query 1689 CTGAGCTGAAGGGAGGATCCCGGCTCATCCGTGAATGGCAACAGAAGCTGCTCACTTGGC 1748
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1673 CTGAGCTGAAGGGAGGATCCC---TCATCCGTGAATGGCAACAGAAGCTGCTCACATGGC 1729
Query 1749 AGCTGGCTTACCCCAACGGCACCGCAGAGGAGTGCAAGGAGTGGATGAGAGATATCAAAG 1808
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1730 AGCTGGCTTACCCCAACGGCACCGCAGAGGAGTGCAAGGAGTGGATGAGATATATCAAAG 1789
Query 1809 CTAAACGACAAAGGATAGAGTGA 1831
| ||||||||||||| |||||||
Sbjct 1790 CCAAACGACAAAGGACAGAGTGA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5