BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22670.1 Length=1269 Score E Sequences producing significant alignments: (Bits) Value Ahg912122 jgi|Araly1|912122|Al_scaffold_0001_2376 1797 0.0 Ahg908800 jgi|Araly1|908800|Al_scaffold_0002_1881 185 6e-46 > Ahg912122 jgi|Araly1|912122|Al_scaffold_0001_2376 Length=1281 Score = 1797 bits (973), Expect = 0.0 Identities = 1189/1289 (92%), Gaps = 32/1289 (2%) Strand=Plus/Plus Query 1 ATGAATCTTGTTGTTCTGCTAATCCTAACATTACTCCTTTTCATTGTTTCTTATGTAGTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGAATCTTGTTGTTCTGCTAATCCTAACATTACTCCTTTTCATTGTTTCATATGTAGTA 60 Query 61 GACGCAGGCCAAGTCATTTTGGTTG-ATTCCAACATAACTCGCTCTTTTGTCGACATGGA 119 |||||||||||||||||||| | || |||||||||||||||| |||||||||| ||| || Sbjct 61 GACGCAGGCCAAGTCATTTT-GATGAATTCCAACATAACTCGTTCTTTTGTCGGCATTGA 119 Query 120 AGCTGATTTCTCTCCATCAGTGACTACGGTGGAAACCGGAGTGGTTTATGTAGCTGAGCC 179 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGCTGATTTCTCTCCATTAGTGACTACGGTGGAAACCGGAGTGGTTTATGTAGCTGAGCC 179 Query 180 TCTCAACGCTTGCCGAAACTTGAGGAATAAACCGGAGCAGAGCCCTTATGGTACTTCCCC 239 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 180 TCTCAACGCTTGCCGAAACTTGAGGAATAAACCGGAGCAGAGCCCTAATGGTACTTCCCC 239 Query 240 TCTTGTGTTGATCATAAGAGGAGGCTGCAGTTTTGAGTACAAAGTCAGAAACGCGCAGAG 299 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTTTGTTTTGATCATAAGAGGAGGCTGCAGTTTTGAGTACAAAGTCAGAAACGCGCAGAG 299 Query 300 AAGCGGTTTCAAGGCTGCCATTGTCTATGACAATGTGGACCGCAACTTCTTATCCGCAAT 359 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 300 AAGCGGTTTCAAGGCTGCCATTGTCTATGACAATGTGGACCGCAAATTCTTATTCGCAAT 359 Query 360 GGGGGGAGACTCGGACGGTATAAAGATTCAAGCGGTTTTTGTGATGAAGAGAGCCGGAGA 419 ||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||||| Sbjct 360 GGGGGGAGACTCGGAAGGTATAAAGATTCAAGCGGTTTTTGTGACGAAAACTGCCGGAGA 419 Query 420 AATGCTCAAGAAGTACGCGGGTTCGGAGGAAATGGAAGTCATGTTGGTTCCTCCTAATAC 479 ||| |||||||||||||| |||| || ||||| ||||||||||||| | || |||| | Sbjct 420 AATTCTCAAGAAGTACGCTGGTTTGGCGGAAACGGAAGTCATGTTGATA--TC-TAATTC 476 Query 480 AGAGGACTCGGTGTGGTCATTGTACGCTTCCATAGCATTGATCTTGTCGCTGGCTATTTT 539 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 477 AGAGGACTCGGTGTGGTCCTTGTACGCTTCCATAGCATTGATCTTGTTGCTGGCTATTTT 536 Query 540 TTGTGTTATGGTTACTTGTGTCTTCTTCTATAGATATTGCTCAACAATTAGAAACTCTAC 599 ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 537 TTGTGTTATGGCCGCTTGTATCTTCTTCTATAGATATTGCACAACACTTAGAAACTCTAC 596 Query 600 ATCTCAATTCAATGGGATGTGCCGTAGAACGGTGAAAGCAATGCCGAGTGTTACATTCAC 659 |||||| ||||||||||||||| ||| || |||||| ||||||||||||||||||||||| Sbjct 597 ATCTCAGTTCAATGGGATGTGCTGTAAAATGGTGAATGCAATGCCGAGTGTTACATTCAC 656 Query 660 TTGTGCAAAAATAGACAACACTACAGGTTTCTCTTGCGCTATCTGCCTTGAAGACTACAT 719 || ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct 657 TTATGCAAAAATAGACAACACTACTGGCTTCTCTTGCGCTATCTGCCTCGAAGACTACAT 716 Query 720 TGTTGGAGACAAGCTCAGGGTCTTACCTTGCAGTCACAAGTTTCATGTCGCTTGCGTAGA 779 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 717 TGTTGGAGACAAGCTCAGGGTCTTACCTTGCAGTCACAAGTTTCATGTCTCATGCGTAGA 776 Query 780 CTCGTGGCTTATATCATGGAGAACGTTTTGTCCAGTGTGTAAACGGGATGCGAGAACGAC 839 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 777 CTCGTGGCTTATATCATGGAGAACGTTTTGTCCAGTCTGTAAACGGGATGCGAGAACGAG 836 Query 840 CGCAGATGAGCCACTAGCTACAGAGAGCACACCGTTTCTCAGTTCTTCCATTGCAACATC 899 |||||||||||||| |||||||||||||||||| || || || ||||||||||||||||| Sbjct 837 CGCAGATGAGCCACCAGCTACAGAGAGCACACCATTGCTAAGCTCTTCCATTGCAACATC 896 Query 900 ATCTCTAGTGTGTATAGACTCTCCTCCTTTGGGATCCTCAGTTTCTTTCTCTCCAGCGCA 959 |||| |||||||||||||| ||||||||||||||||||||||||||||||| | | | Sbjct 897 ATCTGTAGTGTGTATAGACCCTCCTCCTTTGGGATCCTCAGTTTCTTTCTC---A-C--A 950 Query 960 TGTGAGCTCGTCCTTCATTCATCAATTTGTCAGG-T--C-T-TC---G---CC------- 1001 || |||| |||||| |||||| || ||||||||| | | | || | || Sbjct 951 TGCGAGCCCGTCCTACATTCAACAGTTTGTCAGGGTTTCCTCTCATCGAAGCCGCTCTTC 1010 Query 1002 A--A-TGAATGGCAGCCGTATCTCAGAGAATCTTAGGCGACAAGCCTCACCATTACAGTC 1058 | | | ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 1011 ACCAATAAATGGCAGCCGTATCTCTGAGAATCTCAGGCGACAAGCCTCACCATTGCAGTC 1070 Query 1059 ATCATCACAGCGATCACACCTCTCTATGAAGTCTTCCCATTCACTGGGTTATTCGACCAT 1118 |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1071 ATCATCACAGAGATCATACCTCTCTATGAAGTCTTTCCATTCACTGGGTTATTCGACCAT 1130 Query 1119 GTCACCTCTCAACGCGATGGGCATGTCACCATACCGGCCATACCCAAGCAATGCATCGCC 1178 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1131 GTCACCTCTCAACGCGATGGACATGTCACCATACCGGCCATACCCAAGCAATGCATCACC 1190 Query 1179 TGGATTATTCAGTTCAACAAATCATCTGCTTTCCAATTATACAGCAAATACATTCTCTCA 1238 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1191 TGGATTATTCAGTTCAACCAATCATCTGCTTTCCAATTATACAGCAAATACATTCTCTCC 1250 Query 1239 TTTCGCCTCTGCACACTCGCTTCCGGACT 1267 ||||||||||||||||||||||||||||| Sbjct 1251 TTTCGCCTCTGCACACTCGCTTCCGGACT 1279 > Ahg908800 jgi|Araly1|908800|Al_scaffold_0002_1881 Length=1347 Score = 185 bits (100), Expect = 6e-46 Identities = 208/258 (81%), Gaps = 16/258 (6%) Strand=Plus/Plus Query 630 GGTGAAAGCAATGCCGAGTGTTACATTCACTT-G-TGCAAAAATAGACAACACTACAG-G 686 ||| ||||||||||||||| ||| |||| ||| | | | | | |||||| ||||| | Sbjct 630 GGTTAAAGCAATGCCGAGTCTTATATTCTCTTCGTTTC-ACGA-AGACAATACTACTGCA 687 Query 687 TTTCTCTTGCGCTATCTGCCTTGAAGACTACATTGTTGGAGACAAGCTCAGGGTCTTACC 746 ||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 688 TTT-ACTTGCGCTATTTGCCTCGAAGACTACATTGTTGGAGACAAGCTCAGGCTCTTACC 746 Query 747 TTGCAGTCACAAGTTTCATG-TCGCT-TGCGTAGACTCGTGGCTTATA--TCATGGAGAA 802 |||| ||||||||||||||| | | | || || ||||||||| ||| | || ||||||| Sbjct 747 TTGCTGTCACAAGTTTCATGCT-G-TGTGTGTTGACTCGTGG-TTA-ACCTCTTGGAGAA 802 Query 803 CGTTT-TGTCCAGTGTGTAAACGGGATGCGAGAACGACCGCAGATGAGCCACTAGCTACA 861 | ||| ||||| ||||| ||||| ||||| ||||||| | | | ||||| | ||| || Sbjct 803 C-TTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAACACGGGCGAGCCTCCGGCTTCA 861 Query 862 GAGAGCACACCGTTTCTC 879 |||||||| || || ||| Sbjct 862 GAGAGCACGCCATTGCTC 879 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47424908748 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5