BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22670.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912122 jgi|Araly1|912122|Al_scaffold_0001_2376 1797 0.0
Ahg908800 jgi|Araly1|908800|Al_scaffold_0002_1881 185 6e-46
> Ahg912122 jgi|Araly1|912122|Al_scaffold_0001_2376
Length=1281
Score = 1797 bits (973), Expect = 0.0
Identities = 1189/1289 (92%), Gaps = 32/1289 (2%)
Strand=Plus/Plus
Query 1 ATGAATCTTGTTGTTCTGCTAATCCTAACATTACTCCTTTTCATTGTTTCTTATGTAGTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAATCTTGTTGTTCTGCTAATCCTAACATTACTCCTTTTCATTGTTTCATATGTAGTA 60
Query 61 GACGCAGGCCAAGTCATTTTGGTTG-ATTCCAACATAACTCGCTCTTTTGTCGACATGGA 119
|||||||||||||||||||| | || |||||||||||||||| |||||||||| ||| ||
Sbjct 61 GACGCAGGCCAAGTCATTTT-GATGAATTCCAACATAACTCGTTCTTTTGTCGGCATTGA 119
Query 120 AGCTGATTTCTCTCCATCAGTGACTACGGTGGAAACCGGAGTGGTTTATGTAGCTGAGCC 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCTGATTTCTCTCCATTAGTGACTACGGTGGAAACCGGAGTGGTTTATGTAGCTGAGCC 179
Query 180 TCTCAACGCTTGCCGAAACTTGAGGAATAAACCGGAGCAGAGCCCTTATGGTACTTCCCC 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TCTCAACGCTTGCCGAAACTTGAGGAATAAACCGGAGCAGAGCCCTAATGGTACTTCCCC 239
Query 240 TCTTGTGTTGATCATAAGAGGAGGCTGCAGTTTTGAGTACAAAGTCAGAAACGCGCAGAG 299
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTGTTTTGATCATAAGAGGAGGCTGCAGTTTTGAGTACAAAGTCAGAAACGCGCAGAG 299
Query 300 AAGCGGTTTCAAGGCTGCCATTGTCTATGACAATGTGGACCGCAACTTCTTATCCGCAAT 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 300 AAGCGGTTTCAAGGCTGCCATTGTCTATGACAATGTGGACCGCAAATTCTTATTCGCAAT 359
Query 360 GGGGGGAGACTCGGACGGTATAAAGATTCAAGCGGTTTTTGTGATGAAGAGAGCCGGAGA 419
||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 360 GGGGGGAGACTCGGAAGGTATAAAGATTCAAGCGGTTTTTGTGACGAAAACTGCCGGAGA 419
Query 420 AATGCTCAAGAAGTACGCGGGTTCGGAGGAAATGGAAGTCATGTTGGTTCCTCCTAATAC 479
||| |||||||||||||| |||| || ||||| ||||||||||||| | || |||| |
Sbjct 420 AATTCTCAAGAAGTACGCTGGTTTGGCGGAAACGGAAGTCATGTTGATA--TC-TAATTC 476
Query 480 AGAGGACTCGGTGTGGTCATTGTACGCTTCCATAGCATTGATCTTGTCGCTGGCTATTTT 539
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 AGAGGACTCGGTGTGGTCCTTGTACGCTTCCATAGCATTGATCTTGTTGCTGGCTATTTT 536
Query 540 TTGTGTTATGGTTACTTGTGTCTTCTTCTATAGATATTGCTCAACAATTAGAAACTCTAC 599
||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 537 TTGTGTTATGGCCGCTTGTATCTTCTTCTATAGATATTGCACAACACTTAGAAACTCTAC 596
Query 600 ATCTCAATTCAATGGGATGTGCCGTAGAACGGTGAAAGCAATGCCGAGTGTTACATTCAC 659
|||||| ||||||||||||||| ||| || |||||| |||||||||||||||||||||||
Sbjct 597 ATCTCAGTTCAATGGGATGTGCTGTAAAATGGTGAATGCAATGCCGAGTGTTACATTCAC 656
Query 660 TTGTGCAAAAATAGACAACACTACAGGTTTCTCTTGCGCTATCTGCCTTGAAGACTACAT 719
|| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 657 TTATGCAAAAATAGACAACACTACTGGCTTCTCTTGCGCTATCTGCCTCGAAGACTACAT 716
Query 720 TGTTGGAGACAAGCTCAGGGTCTTACCTTGCAGTCACAAGTTTCATGTCGCTTGCGTAGA 779
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 717 TGTTGGAGACAAGCTCAGGGTCTTACCTTGCAGTCACAAGTTTCATGTCTCATGCGTAGA 776
Query 780 CTCGTGGCTTATATCATGGAGAACGTTTTGTCCAGTGTGTAAACGGGATGCGAGAACGAC 839
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 777 CTCGTGGCTTATATCATGGAGAACGTTTTGTCCAGTCTGTAAACGGGATGCGAGAACGAG 836
Query 840 CGCAGATGAGCCACTAGCTACAGAGAGCACACCGTTTCTCAGTTCTTCCATTGCAACATC 899
|||||||||||||| |||||||||||||||||| || || || |||||||||||||||||
Sbjct 837 CGCAGATGAGCCACCAGCTACAGAGAGCACACCATTGCTAAGCTCTTCCATTGCAACATC 896
Query 900 ATCTCTAGTGTGTATAGACTCTCCTCCTTTGGGATCCTCAGTTTCTTTCTCTCCAGCGCA 959
|||| |||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 897 ATCTGTAGTGTGTATAGACCCTCCTCCTTTGGGATCCTCAGTTTCTTTCTC---A-C--A 950
Query 960 TGTGAGCTCGTCCTTCATTCATCAATTTGTCAGG-T--C-T-TC---G---CC------- 1001
|| |||| |||||| |||||| || ||||||||| | | | || | ||
Sbjct 951 TGCGAGCCCGTCCTACATTCAACAGTTTGTCAGGGTTTCCTCTCATCGAAGCCGCTCTTC 1010
Query 1002 A--A-TGAATGGCAGCCGTATCTCAGAGAATCTTAGGCGACAAGCCTCACCATTACAGTC 1058
| | | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1011 ACCAATAAATGGCAGCCGTATCTCTGAGAATCTCAGGCGACAAGCCTCACCATTGCAGTC 1070
Query 1059 ATCATCACAGCGATCACACCTCTCTATGAAGTCTTCCCATTCACTGGGTTATTCGACCAT 1118
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1071 ATCATCACAGAGATCATACCTCTCTATGAAGTCTTTCCATTCACTGGGTTATTCGACCAT 1130
Query 1119 GTCACCTCTCAACGCGATGGGCATGTCACCATACCGGCCATACCCAAGCAATGCATCGCC 1178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1131 GTCACCTCTCAACGCGATGGACATGTCACCATACCGGCCATACCCAAGCAATGCATCACC 1190
Query 1179 TGGATTATTCAGTTCAACAAATCATCTGCTTTCCAATTATACAGCAAATACATTCTCTCA 1238
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGGATTATTCAGTTCAACCAATCATCTGCTTTCCAATTATACAGCAAATACATTCTCTCC 1250
Query 1239 TTTCGCCTCTGCACACTCGCTTCCGGACT 1267
|||||||||||||||||||||||||||||
Sbjct 1251 TTTCGCCTCTGCACACTCGCTTCCGGACT 1279
> Ahg908800 jgi|Araly1|908800|Al_scaffold_0002_1881
Length=1347
Score = 185 bits (100), Expect = 6e-46
Identities = 208/258 (81%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 630 GGTGAAAGCAATGCCGAGTGTTACATTCACTT-G-TGCAAAAATAGACAACACTACAG-G 686
||| ||||||||||||||| ||| |||| ||| | | | | | |||||| ||||| |
Sbjct 630 GGTTAAAGCAATGCCGAGTCTTATATTCTCTTCGTTTC-ACGA-AGACAATACTACTGCA 687
Query 687 TTTCTCTTGCGCTATCTGCCTTGAAGACTACATTGTTGGAGACAAGCTCAGGGTCTTACC 746
||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 688 TTT-ACTTGCGCTATTTGCCTCGAAGACTACATTGTTGGAGACAAGCTCAGGCTCTTACC 746
Query 747 TTGCAGTCACAAGTTTCATG-TCGCT-TGCGTAGACTCGTGGCTTATA--TCATGGAGAA 802
|||| ||||||||||||||| | | | || || ||||||||| ||| | || |||||||
Sbjct 747 TTGCTGTCACAAGTTTCATGCT-G-TGTGTGTTGACTCGTGG-TTA-ACCTCTTGGAGAA 802
Query 803 CGTTT-TGTCCAGTGTGTAAACGGGATGCGAGAACGACCGCAGATGAGCCACTAGCTACA 861
| ||| ||||| ||||| ||||| ||||| ||||||| | | | ||||| | ||| ||
Sbjct 803 C-TTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAACACGGGCGAGCCTCCGGCTTCA 861
Query 862 GAGAGCACACCGTTTCTC 879
|||||||| || || |||
Sbjct 862 GAGAGCACGCCATTGCTC 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5