BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22680.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921292 jgi|Araly1|921292|scaffold_102573.1 778 0.0
> Ahg921292 jgi|Araly1|921292|scaffold_102573.1
Length=596
Score = 778 bits (421), Expect = 0.0
Identities = 550/608 (90%), Gaps = 25/608 (4%)
Strand=Plus/Plus
Query 276 CAAAACTAAACACTATTTTGAATGGATACTTCGCCAAGGACCCGAATTGTACCTACTAGA 335
||||||| |||||| || | |||||||||||| |||||||||||||||||| | |||||
Sbjct 1 CAAAACT-AACACTCTTCTCAATGGATACTTCCCCAAGGACCCGAATTGTA-C--CTAGA 56
Query 336 CGATCCAACTCGGTCAAATTCTCCTCGACGGTTAACATTTCAACCCGGCGATCActctct 395
|||||| ||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 57 CGATCCGACTCGATCAAATTCTCATCGCCGGTTAACATTTCTACCCGGCGATCACTCTCT 116
Query 396 tcctcctcctccaattccctcctattctccggcaactctccggcaactcctctccatccA 455
|||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 117 TCCTCCTCTTCCAATTCTCTCCTATTCTCCAGCAACTCTCCGGCAACCCCTCTCCATCCC 176
Query 456 CTTGGCATCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCTCGTATCAC 515
|||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 177 CTTGGCGTCCCATTTTCATGGGAAAAGCTTCCCGGTAAACCTAAAGAGTTCCCATATCAC 236
Query 516 CGGAAAAACGAATCATTAAGCAACCTCTTGCCTCTCCCTCCTCACTGGAGTAACCATAGC 575
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 237 CGGAAAAACGAATCATCAAGCAACCTCTTGCCTCTCCCTCCTCACCGGAGTAACCATAAC 296
Query 576 CCTAACACCAGATGTAAGAAGAACACGTCCCCTGCGGCCATGAGAGATCCTTTCATGGCG 635
|| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct 297 CCCAACACCAGACGTAAGAAGAACACGTCTCCTGCGGCCATGAGAGATCCCTTCACGGCG 356
Query 636 GCGTTGGTAGAGTGTTCCAAAGGCGCTACC-ACAGACGGAGAACATACCGGCGGCGAATC 694
||||||||||||||||||||| | || ||| || | ||||||||||||||||||||||||
Sbjct 357 GCGTTGGTAGAGTGTTCCAAA-G-GC-ACCAAC-GTCGGAGAACATACCGGCGGCGAATC 412
Query 695 AAGGAAGGTCTTGAGGAAGAGCAGGAGCATCGGGTTACTGAATCTTTACTCTTCTTGTAG 754
||||||||||||||||||||||| | ||| ||| |||||||||||||| ||||||||||
Sbjct 413 AAGGAAGGTCTTGAGGAAGAGCA--A-CATGGGGCTACTGAATCTTTACGCTTCTTGTAG 469
Query 755 AAGAGCTTGTGAAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTG-C----TT-C 808
||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 470 AAGAGCTTGTGCAGTTTCTGAATCCATTGTTTATCTCCCGAAGTCCATTGACCAAGTTGC 529
Query 809 --C-TACGATCATCTTCATCTCAGCACTCGTGGTCGTCGTCGCCGATGATTGATCACATT 865
| ||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||
Sbjct 530 TTCATACGATCATCTTCTTCTCAGCACTCGT---CGTCGTAGCCGATGATTTATCACATT 586
Query 866 CGTC-ATC 872
|||| |||
Sbjct 587 CGTCGATC 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5