BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22690.1

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472509 jgi|Araly1|472509|fgenesh2_kg.1__2463__AT1G22690.1         676    0.0  


> Ahg472509 jgi|Araly1|472509|fgenesh2_kg.1__2463__AT1G22690.1
Length=481

 Score =  676 bits (366),  Expect = 0.0
 Identities = 438/469 (93%), Gaps = 20/469 (4%)
 Strand=Plus/Plus

Query  27   CAAGAAATATGAAGAAGATGAATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTC  86
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct  1    CAAGAAATATGAAGAAGATGAATGTGGTGGCTTTTGTTATGCTGATCATCTCTCTTCTCC  60

Query  87   TGCTTTCTCAGGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTT  146
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  61   TGCTTTCTCAGGCACTTGCAGAGTTGTCTTCATCCAGCAACAATGAAACTTCCTCTGTTT  120

Query  147  CTCAGACGAATGACGAGAACCAAACTGCGGCGTTTAAGAGAACATACCACCATCGTCCAA  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTCAGACGAATGACGAGAACCAAACTGCGGCGTTTAAGAGAACATACCACCATCGTCCAA  180

Query  207  GAATCAATTGTGGGCATGCATGCGCAAGGAGATGCAGTAAGACATCGAGGAAGAAAGTTT  266
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  181  GAATCAATTGTGGGCATGCATGCGCAAGGAGATGCAGCAAGACATCGAGGAAGAAAGTGT  240

Query  267  GTCACAGAGCCTGTGGAAGTTGTTGTGCCAAGTGTCAGTGTGTGCCGCCGGGAACCTCCG  326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCACAGAGCCTGTGGAAGTTGTTGTGCCAAGTGTCAGTGTGTGCCGCCGGGAACCTCCG  300

Query  327  GCAACACAGCATCATGTCCTTGCTACGCCAGTATCCGTACACATGGCAATAAACTCAAAT  386
            ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  301  GCAACACAGCAGCATGTCCTTGCTACGCCAATATCCGTACACATGGCAATAAACTCAAGT  360

Query  387  GTCCTTAAAAGACTTCTCATTTCTCAACTATAGTCTCATCTTCTGATTATGTTTCTTCTT  446
            |||||||||||||||||| |  |  |  |     ||  | ||  |||||||||||||| |
Sbjct  361  GTCCTTAAAAGACTTCTC-T--C--A--T-----CT--T-TT--GATTATGTTTCTTCGT  403

Query  447  TTGTTATGTTGCATGTGTGATGTGTGAGCTTATT---ATTATGTTGATT  492
            ||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct  404  TTGTTATGTTGCATGTGTGATGTGTGAGCTTATTTCCATTATGTTGATT  452


 Score = 62.1 bits (33),  Expect = 4e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  524  GATTCCGAATAATAAGATGAGTGATTTTATTGG  556
            |||||||||||||||||||||||||||||||||
Sbjct  449  GATTCCGAATAATAAGATGAGTGATTTTATTGG  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20375084526


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5