BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22700.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472512 jgi|Araly1|472512|fgenesh2_kg.1__2466__AT1G22700.2 1480 0.0
> Ahg472512 jgi|Araly1|472512|fgenesh2_kg.1__2466__AT1G22700.2
Length=1071
Score = 1480 bits (801), Expect = 0.0
Identities = 1015/1110 (91%), Gaps = 47/1110 (4%)
Strand=Plus/Plus
Query 1 TCTCTTGAGcacacacacacaTACAAGACT-CTCCTCACAGAACGATTT-AGATTTAATC 58
||||||||| | ||||||| |||||||| || ||||||||||||||| | |||| |||
Sbjct 6 TCTCTTGAG--CGCACACAC--ACAAGACTCCT-CTCACAGAACGATTTCA-ATTTCATC 59
Query 59 GGGAAAAAGTTCAGTCAGTGACACTAATGTTCGAATCGAACATGGTTCTTCAAACACTAt 118
|| |||||| | |||||||| || |||||||||||||||||| ||||||| |||||||
Sbjct 60 GGAAAAAAG-T---TCAGTGACCCTTATGTTCGAATCGAACATGCTTCTTCATACACTAT 115
Query 119 cttcttcttctcctccaattcaccgtctctatcttcaccattctcagattctcccttctt 178
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 116 CTTCTTCTTCTCCTCCACTTCACCGTCTCTATCTTCACCATTCCCAGATTCTCCCTTCTT 175
Query 179 ctGGGTCACCC-AGCAAGATTTCTCTTCAGATACATGGAAGGACTTTGGCCATTCGATCT 237
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTGGGTCACCCAAG-AAGATTTCTCTTCAGATACATGGAAGGACTTTGGCCATTCGATCT 234
Query 238 TTTCATGATTATGTCTTTGCAGAAATTTCTGCTAGAGGTTTACCGGCTTTGAACAAAGCT 297
|||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTTC------A------T---GAAATTTCTGCTAGAGGTTTACCGGCTTTGAACAAAGCT 279
Query 298 TCCTTGAAGAAGCTACCAATCAAAGGATCTACCTTTCTGCTGGGGCAGAGCTTGTTGATG 357
||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 280 TCCTTGAAGAAGCTACCAATCAAAGGATCCACCTTTCTGCTGGGTCAGAGCATGTTGATG 339
Query 358 GTTTCTGCTCACCCACAGTTGGCAGCAGCAGCAGAAATCATAAAGCCTGAACCGATTTAC 417
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GTTTCTGCTTACCCACAGATGGCAGCAGCAGCAGAAATCATAAAGCCTGAACCGATTTAC 399
Query 418 GAAGTTGGAGAGTTATTTGAACTTAGTATTCAGCTTTCTTACTTGCTGTTACTACTGGGG 477
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAAGTTGGGGAGTTATTTGAACTTAGTATTCAGCTTTCTTACTTGCTGTTACTACTGGGG 459
Query 478 TTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTAGAC 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 460 TTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTTGAC 519
Query 538 CTCTCCGCTAAAGAATTGCAGGAGCAAGTAAGGAGCGGAGATGCAAGTGCAACAGAGCTC 597
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 520 CTCTCCGCTAAAGAATTGCAGGAGCAAGTTAGGAGTGGCGATGCAAGTGCAACAGAGCTC 579
Query 598 TTTGAGCTTGGTGCAGTGATGTTGAGAAGGAAGTTTTATCCTGCAGCCAACAAGTTTTTG 657
|| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 580 TTCGAGCTTGGTGCAGTGATGTTGCGAAGGAAATTTTATCCTGCTGCCAACAAGTTTTTG 639
Query 658 CAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTATAACGCT 717
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 640 CAACAAGCCATCCAGAAATGGGACGGCGATGATCAAGATCTTGCCCAGGTCTATAACGCT 699
Query 718 CTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAAGGAATTGCTCAGTTTGAAATG 777
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 700 CTTGGAGTGAGTTATGTCCGAGAGGATAAACTCGACAAAGGAATCGCTCAGTTTGAAATG 759
Query 778 GCGGTGAAGCTGCAACCCGGTTATGTAACAGCTTGGAACAACCTTGGGGATGCTTATGAG 837
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 760 GCGGTGAAGCTGCAGCCCGGTTATGTAACGGCTTGGAACAACCTTGGGGACGCTTATGAG 819
Query 838 AAGAAGAAGGAGTTGCCTTTGGCATTGAATGCGTTTGAAGAAGTTTTGTTGTTTGATCCA 897
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 820 AAGAAAAAGGAGTTGCCTTTGGCATTGAAAGCGTTTGAAGAGGTTTTGTTGTTTGATCCG 879
Query 898 AACAATAAGGTGGCTCGGCCTCGGCGAGATGCGTTGAAGGATCGCGTGAAGCTTTATAAA 957
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 880 AACAATAAGGTGGCTCGGCCTCGGCGAGATGCGTTGAAGGATCGTGTGAAGCTTTATAAA 939
Query 958 GGTGTTGTGGCTGTTAAGTCTAAGAAACGGTGACGGCTCAAACAAGATGCAAACTCTGAA 1017
|| ||||| | ||||| |||||||||||||||||||| |||||||| | |||||| |||
Sbjct 940 GGCGTTGTCTCGGTTAAATCTAAGAAACGGTGACGGCTAAAACAAGAAGAAAACTC-GAA 998
Query 1018 CCAAGAACCGTTGGTCTCTCTCCCCCTTGTGTAtttttttGGTTTGGTAATATGTATGGA 1077
||||||||||||||||| | | || || | || ||||||||||| |||
Sbjct 999 CCAAGAACCGTTGGTCT-T-T-----TTCTG---------GCTT-GGTAATATGTAAGGA 1041
Query 1078 GATTTTGTGTTAATATGAAAATGAAACTTT 1107
||||||||||||||||||||||||||||||
Sbjct 1042 GATTTTGTGTTAATATGAAAATGAAACTTT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5