BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22710.1
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472513 jgi|Araly1|472513|fgenesh2_kg.1__2467__AT1G22710.1 3048 0.0
Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1 754 0.0
Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1 754 0.0
> Ahg472513 jgi|Araly1|472513|fgenesh2_kg.1__2467__AT1G22710.1
Length=1956
Score = 3048 bits (1650), Expect = 0.0
Identities = 1866/1966 (95%), Gaps = 31/1966 (2%)
Strand=Plus/Plus
Query 7 TCTTCGGATAATCCTATCCTTCTCTTCCTATAAATACCTCTCCACTCTTCCTCTTCCTCC 66
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TCTTCGGATAATCCTATCC-TCTCTTCCTATAAATACCTCTCCAATCTTCCTCTTCCTCC 59
Query 67 ACCACTACAACCACCGCAACAACCACC---------AAAAACCCTCTCAAAGAAATTTCt 117
||||||||||||||||||||| ||||| |||||| |||||||| |||||||
Sbjct 60 ACCACTACAACCACCGCAACATCCACCGGAAAATTAAAAAACACTCTCAAATAAATTTC- 118
Query 118 tttttttCTTACTTTCTTGGTTTGTCAAATATGGTCAGCCATCCAATGGAGAAAGCTGCA 177
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 119 --TTTTT-TTACTTTCTTGGTTTGTCCAATATGGTCAGCCATCCAATGGAAAAAGCTGCA 175
Query 178 AATGGTGCGTCTGCGTTGGAAACGCAGACGGGTGAGTTAGATCAGCCGGAACGGCTTCGT 237
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 176 AATGGTGCGTCGGCGTTGGAAACGCAGACGGGTGAGTTAGATCAGCCAGAACGGCTTCGA 235
Query 238 AAGATCATATCGGTGTCTTCCATTGCCGCCGGTGTACAGTTCGGTTGGGCTTTACAGTTA 297
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 236 AAGATCATATCGGTGGCTTCGATTGCCGCCGGTGTACAGTTCGGTTGGGCTTTACAGTTA 295
Query 298 TCTCTGTTGACTCCTTACGTGCAGCTACTCGGAATCCCACATAAATGGGCTTCTCTGATT 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCTCTGTTGACACCTTACGTGCAGCTACTCGGAATCCCACATAAATGGGCTTCTCTGATT 355
Query 358 TGGCTCTGTGGTCCAATCTCCGGTATGCTTGTTCAGCCTATCGTCGGTTACCACAGTGAC 417
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 356 TGGCTCTGTGGTCCAATCTCCGGTATGCTTGTCCAGCCTATCGTTGGTTACCACAGTGAC 415
Query 418 CGTTGCACCTCAAGATTCGGCCGTCGTCGTCCCTTCATCGTCGCTGGAGCTGGTTTAGTC 477
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 416 CGTTGCACCTCTAGATTCGGCCGTCGTCGTCCTTTCATCGTCGCCGGAGCTGGTTTAGTC 475
Query 478 ACCGTTGCTGTTTTCCTTATCGGTTACGCTGCCGATATAGGTCACAGCATGGGCGATCAG 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 476 ACGGTTGCTGTTTTCCTTATCGGTTACGCTGCCGATATAGGTCACAGCATGGGTGATAAG 535
Query 538 CTTGACAAACCGCCGAAAACGCGAGCCATAGCGATATTCGCTCTCGGGTTTTGGATTCTT 597
||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 536 CTTAACAAACCGCCTAGAACGCGAGCTATAGCGATATTCGCTCTCGGGTTTTGGATTCTT 595
Query 598 GACGTGGCTAACAACACCTTACAAGGACCCTGCAGAGCTTTCTTGGCTGATTTATCAGCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GACGTGGCTAACAACACCTTACAAGGACCCTGCAGAGCTTTCTTGGCTGATTTATCAGCA 655
Query 658 GGGAACGCTAAGAAAACGCGAACCGCAAACGCGTTTTTCTCGTT-TTTCATGGCGGTTGG 716
|||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 656 GGGAACGCAAAGAAAACGCGGACCGCAAACGCGTTTTTCTCGTTCTTT-ATGGCGGTTGG 714
Query 717 AAACGTTTTGGGTTACGCTGCGGGATCTTACAGAAATCTCTACAAAGTTGTGCCTTTCAC 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAACGTTTTGGGTTACGCGGCGGGATCTTACAGAAATCTCTACAAAGTTGTGCCTTTCAC 774
Query 777 GATGACTGAGTCATGCGATCTCTACTGCGCAAACCTCAAAACGTGTTTTTTCCTATCCAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GATGACTGAGTCATGCGATCTCTACTGCGCAAACCTCAAAACGTGTTTTTTCCTATCCAT 834
Query 837 AACGCTTCTCCTCATAGTCACTTTCGTATCTCTCTGTTACGTGAAGGAGAAGCCATGGAC 896
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 835 AACGCTTCTCCTCTTAGTCACTTTCATATCTCTCTGTTACGTGAAGGAGAAGCCATGGAC 894
Query 897 GCCAGAGCCAACAGCCGATGGAAAAGCCTCCAACGTTCCGTTTTTCGGAGAAATCTTCGG 956
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct 895 GCCAGAGCCAACAGCAGATGGAAAAACCTCAAACGTTCCGTTTTTCGGAGAAATCTTTGG 954
Query 957 AGCTTTCAAGGAACTAAAAAGACCCATGTGGATGCTTCTTATAGTCACTGCACTAAACTG 1016
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 955 AGCTTTCAAGGAACTAAAAAGACCGATGTGGATGCTTCTTATAGTCACTGCACTAAACTG 1014
Query 1017 GATCGCTTGGTTCCCTTTCCTTCTCTTCGACACTGATTGGATGGGCCGTGAGGTGTACGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GATCGCTTGGTTCCCTTTCCTTCTCTTCGACACTGATTGGATGGGCCGTGAGGTGTACGG 1074
Query 1077 AGGAAACTCAGACGCAACCGCAACCGCAGCCTCTAAGAAGCTTTACAACGACGGAGTCAG 1136
|||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 1075 AGGAGACTCAGACGCAAAAGCAACCGCAGCCGCTAAGAAGCTTTACAACGACGGGGTCAG 1134
Query 1137 AGCTGGTGCTTTGGGGCTTATGCTTAACGCTATTGTTCTTGGTTTCATGTCTCTTGGTGT 1196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGCTGGTGCGTTGGGGCTTATGCTTAACGCTATTGTTCTTGGTTTCATGTCTCTTGGTGT 1194
Query 1197 TGAATGGATTGGTCGGAAATTGGGAGGAGCTAAAAGGCTTTGGGGTATTGTTAACTTCAT 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGAATGGATTGGTCGGAAATTGGGAGGAGCTAAAAGGCTTTGGGGTATTGTTAACTTCAT 1254
Query 1257 CCTCGCCATTTGCTTGGCCATGACGGTTGTGGTTACGAAACAAGCTGAGAATCACCGACG 1316
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1255 CCTCGCCATTTGCTTGGCCATGACGGTTGTGGTTACGAAACAGGCGGAGAATCACCGACG 1314
Query 1317 AGATCACGGCGGCGCTAAAACAGGTCCACCTGGTAACGTCACAGCTGGTGCTTTAACTCT 1376
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1315 AGATCACGGCGGCGCTAAAACAGGACCACCTGGTAACGTCACAGCTGGTGCTTTAACTCT 1374
Query 1377 CTTCGCCATCCTCGGTATCCCCCAAGCCATTACGTTTAGCATTCCTTTTGCACTAGCTTC 1436
||||||| | |||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1375 CTTCGCCGTTCTCGGTATTCCTCAAGCCATTACGTTTAGTATTCCTTTTGCACTAGCTTC 1434
Query 1437 CATATTTTCAACCAATTCCGGTGCCGGCCAAGGACTTTCCCTAGGTGTTCTGAATCTAGC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CATATTTTCAACCAATTCCGGTGCCGGCCAAGGACTTTCCCTAGGTGTTCTGAATCTAGC 1494
Query 1497 CATTGTCGTCCCTCAGATGGTAATATCTGTGGGAGGTGGACCATTCGACGAACTATTCGG 1556
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1495 CATTGTCGTCCCTCAGATGGTTGTATCTGTGGGAGGTGGACCATTCGACGAACTATTCGG 1554
Query 1557 TGGTGGAAACATTCCAGCATTTGTGTTAGGAGCGATTGCGGCAGCGGTAAGTGGTGTATT 1616
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1555 TGGTGGAAACATTCCAGCATTTGTGTTAGGAGCGATCGCGGCAGCGGTAAGTGGCGTATT 1614
Query 1617 GGCGTTGACGGTGTTGCCTTCACCGCCTCCGGATGCTCCTGCCTTCAAAGCTACTATGGG 1676
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1615 GGCGTTAACGGTGTTGCCTTCGCCGCCTCCGGATGCTCCTGCGTTCAAAGCTACTATGGG 1674
Query 1677 ATTTCATTGAATTTTAGCAGTGGTTGTTTGGCTCTCTTTCTCTCATAAAACAGTAGTGTT 1736
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1675 ATTTCATTGAATTTTAGCAGTGGTTGACTGGCTCTCTTTCTCTCATAAAACAGTAGTATT 1734
Query 1737 GTGCAAATCCTACATaaagaaaaaagaaaaggaaaTTAAACTCATTGGGTTGGTTTGTAT 1796
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1735 GTGCAAATCCTACATAAAGAAAAAAGAAAAGGAACTCAAACTCATTGGGTTGGTTTGTAT 1794
Query 1797 TTTACCTAAACCCACGAAGTTCCTTTTTCTTTTTGTAACTCAATTTAAATTTGGAGTATA 1856
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1795 TTTACCTAAACCCACTTTGTTCCTTTTTCTTTTTGTAACTGAATTTAAATTTGGAGTACA 1854
Query 1857 TTTTACTTTTTGTTACCT-------TC--AA-GGCTTCAATATTACGACTTCATTGTT-C 1905
|||||||||||||||||| || || |||||||||||||||||||||||||| |
Sbjct 1855 TTTTACTTTTTGTTACCTCAAAAACTCTCAAAGGCTTCAATATTACGACTTCATTGTTTC 1914
Query 1906 GGTAATAAATACCTCATAAGCTACAAAAGATTATGTAACGATTTAA 1951
||||||| |||||||| |||||||||| ||||||||||| |||
Sbjct 1915 GGTAATA----CCTCATAATCTACAAAAGAATATGTAACGATCTAA 1956
> Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1
Length=1634
Score = 754 bits (408), Expect = 0.0
Identities = 1154/1501 (77%), Gaps = 103/1501 (7%)
Strand=Plus/Plus
Query 231 GCTTCGTAAGATCATATCGGTGTCTTCCATTGCCGCCGGTGTACAGTTCGGTTGGGCTTT 290
||| ||||| ||||| || ||| |||| || ||||||||||||||||| || ||||| ||
Sbjct 121 GCTGCGTAAAATCATCTCCGTGGCTTCAATCGCCGCCGGTGTACAGTTTGGGTGGGCCTT 180
Query 291 ACAGTTATCTCTGT-TGACTCCTTACGTGCAGCTACTCGGAATCCCACATAAATGGGCTT 349
|||| | ||||| | ||||||||||||| || || ||||||||||| || |||||| | |
Sbjct 181 ACAGCTCTCTCT-TCTGACTCCTTACGTACAACTTCTCGGAATCCCTCACAAATGGTCGT 239
Query 350 CTCT-GATTTGGCTCTGTGGTCCAATCTCCGGTATGCTTGTTCAGCCTATCGTCGGTTAC 408
|| | || |||||||||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 240 CT-TACATGTGGCTCTGTGGTCCTATCTCCGGCATGCTTGTTCAACCAATCGTCGGTTAC 298
Query 409 CACAGTGACCGTTGC-ACCTCAAGATTCGGCCGTCGTCGTCCCTTCATCGTCGCTGGAGC 467
||||||||||| ||| | || |||||||| || |||||||| ||||||| | | |||||
Sbjct 299 CACAGTGACCGATGCGA-GTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGC 357
Query 468 TGGT-TTAGTCA-CCGT-TGCTGTTTTCCTTATCGG-TTACGCTGCCGATATAGGTCACA 523
|| | || | |||| | | |||||||||||||| || ||| || ||||| || || |
Sbjct 358 -CGTACTCGT-AGCCGTCT-CGGTTTTCCTTATCGGATT-CGCGGCGGATATGGGACATA 413
Query 524 GCATGGGCGATCAGCTTGACAAACCGCCG-AA-AACGCGAGCCA-TAGCGATATTCGC-T 579
| | || ||| | || || || | | || || ||||||| || || ||| | |
Sbjct 414 GTTTTGGAGATAAACTCGA-GAA-CAAGGTAAGGACTCGAGCCATTA-TAATCTTC-CTT 469
Query 580 -CTCGGGTTTTGGATTCTTGACGTGGCTAACAACACCTTACAAGGACCCTGCAGAGCTTT 638
| |||||||||| | |||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 470 AC-CGGGTTTTGGGTCCTTGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTT 528
Query 639 CTTGGCTGATTTATCAGCAGGGA-ACGCTAAGAAAACGCGAACCGCAAACGCGTTTTTCT 697
||| || |||||| | || ||| ||||||| ||||||||| ||||||||| | |||||
Sbjct 529 CTTAGCCGATTTAGCCGC-CGGAGACGCTAAAAAAACGCGAGTCGCAAACGCATGTTTCT 587
Query 698 CGTTTTTCATGGCGGTTGGAAACGTTTTGGGTTACGCTGCGGGATCTTACAGAAATCT-C 756
| ||||| |||||||||||||||||||||||||||||||| |||||||||| || || |
Sbjct 588 CTTTTTTTATGGCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTC 647
Query 757 TACAAA--GTTGTGCCTTTCACGATGACTGA-GTCATGCGATCTCTACTGCGCAAACCTC 813
||||| ||| | |||||||| ||||| | | | |||||| |||| ||||| || |||
Sbjct 648 -ACAAAATGTT-T-CCTTTCACAATGACAAAAG-CTTGCGATGTCTATTGCGCGAATCTC 703
Query 814 AAAACGTGTTTTTTCCTATCCATAACGCTTCTCCTCATAGTCAC-TT-TCGTATCTCTCT 871
|| || ||||| ||||||||||| || || ||||| || |||| || |||| |||| |
Sbjct 704 AAGACTTGTTTCTTCCTATCCATCACTCTCCTCCTTATCCTCACCTTCTCGT--CTCTAT 761
Query 872 GTTACGTGAAGGAGAAGCCATGGACGCCAGAGCCAACA-GCCGAT---G-GAAAAGCCTC 926
| ||||| || || || | |||| | || | ||| || | || | ||||| | ||
Sbjct 762 GGTACGTTAAAGACAAACAATGGTCTCC-G--CCA-CATGGAGAGAAAGAGAAAA-CATC 816
Query 927 CAACGTTCCGTTTTTC---GGAGAAATCTTCGGAGCTTTCA-AGGAACTAAAAAGACCCA 982
|| || | |||||| ||||||||||| |||||| ||| || | | ||| | ||||
Sbjct 817 -AA-GT-CTTTTTTTCTTTGGAGAAATCTTTGGAGCTGTCAGAGTCA-TGAAACGTCCCA 872
Query 983 TGTGGATGCTTCTTATAGTCACTGC-ACTAAACTGGATCGCTTGGTTCCC-TTTCCTTCT 1040
||||||||||||| || ||||| | | ||| |||||||||||||| || |||| || |
Sbjct 873 TGTGGATGCTTCTAATGGTCACGGTTATTAAT-TGGATCGCTTGGTTTCCGTTTCTTT-T 930
Query 1041 CTTCGACACTGATTGGATGGGCCGTGAGGTGTACGGAGGAAACTCAGACGCAACCGCAAC 1100
| ||| || ||||||||||| ||||| |||||||| ||||| ||||| | || | |
Sbjct 931 GTACGATACCGATTGGATGGGTCGTGAAGTGTACGGTGGAAATTCAGATGGAAATG-A-- 987
Query 1101 CGCA-GCCTCTAAGAAGCTTTACAACGACGGAGT-CAGAGCTGGTGCTTTGGGGCTT-AT 1157
||| ||| ||||| |||||| || | ||||| ||| |||||||| ||||| || ||
Sbjct 988 -GCAAGCC---AAGAAACTTTACGACCAAGGAGTTCAG-GCTGGTGCATTGGGA-TTGAT 1041
Query 1158 GCTTAACGCTATTGTTCTTGGTTTCATGTCTCTTGGTGTTGAATGGATTGGTCGGAAATT 1217
| |||| | || ||||||||||| |||| ||||||||||||| ||||||||||||| |
Sbjct 1042 GTTTAATTCAATACTTCTTGGTTTCGTGTCACTTGGTGTTGAATCGATTGGTCGGAAAAT 1101
Query 1218 GGGAGGAGCTAAAAGGCTTTGGGGTAT-TGTTAACTTCATCCTCGCCATTTGCTTGGCCA 1276
||||||||||||| | |||||||| || ||| || ||||| |||||||| | |||||||
Sbjct 1102 GGGAGGAGCTAAACGACTTTGGGG-ATGTGTGAATTTCATACTCGCCATAGGTTTGGCCA 1160
Query 1277 TGACGGTTGTGGTTACGAAA-CAAGCTGAGAATCACCGACGAGATCACGGCGGCGCTAAA 1335
|||||||| | |||||| || | ||||| || ||||| || | | || ||| |||
Sbjct 1161 TGACGGTTCTTGTTACGCAATCC-GCTGATAACCACCG--GAAAAC-CGCCGGTGCTTTG 1216
Query 1336 ACAGGTCC-ACC--TGGTAACGTCACAGCTGGTGC-TTTAACTCTCTTCGCCATCCTCGG 1391
| || || | | ||||| | | ||| || | |||| |||||| || | || ||
Sbjct 1217 TCCGGACCGAGCAGTGGTAT--TAA-AGCCGGAGTATTTAG-TCTCTTTACCGTTCTTGG 1272
Query 1392 TATCCCCCAAGCCATTACGTTT-AGCATTCCTTTTGCACTAGCTTCCATATTT-TCAACC 1449
|||||| |||||||| || || |||| ||||||||||| ||||| ||| ||||||
Sbjct 1273 TATCCCATTGGCCATTAC-TTACAGTGTTCCATTTGCACTAGCGTCCAT-TTTCTCAACC 1330
Query 1450 AATTCCGGTGCCGGCCAAGGACTTTCCCTAGGTGTTCTGAATCTAGCCATT-GTCGTCCC 1508
|||||||||||||||||||||||||| ||||| ||| | ||| |||| ||| || | ||
Sbjct 1331 AATTCCGGTGCCGGCCAAGGACTTTCTCTAGGCGTTTTAAATATAGCGATTTGTA-TACC 1389
Query 1509 TCAGATGGTAATATC-TGTGGGAGGTGGACCATTCGACGAACTA-TTCGGTGGTGGAAAC 1566
|| ||| || |||| | | | |||||||||| |||| | | ||||| |||||||||
Sbjct 1390 ACAAATGATAGTATCAT-TCTCAAGTGGACCATTGGACGCTC-ACTTCGGCGGTGGAAAC 1447
Query 1567 ATTCCAGCATTTGTGTTAGGAGCGATTGCGGCAGCGGTAAGTGGTGTATTGGCGTTGACG 1626
| || |||||||| | ||||| |||||||| ||| | ||||| || || ||||| ||
Sbjct 1448 CTACCTTCATTTGTGGTCGGAGCTATTGCGGCTGCGATTAGTGGAGTGTTAGCGTTAACC 1507
Query 1627 GTGT-TGCCTTCACCGCCTCCGGATGCTCCTGCC-T-TCAAAGCTACTATGGGATTTCAT 1683
|| | | |||||||||||| |||| || || ||| | ||| | |||||||||| |||
Sbjct 1508 GT-TCTACCTTCACCGCCTGCGGACGCACCAGCCATGTCAGGGG--CTATGGGATTCCAT 1564
Query 1684 T 1684
|
Sbjct 1565 T 1565
> Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1
Length=1634
Score = 754 bits (408), Expect = 0.0
Identities = 1153/1500 (77%), Gaps = 101/1500 (7%)
Strand=Plus/Plus
Query 231 GCTTCGTAAGATCATATCGGTGTCTTCCATTGCCGCCGGTGTACAGTTCGGTTGGGCTTT 290
||| ||||| ||||| || ||| |||| || ||||||||||||||||| || ||||| ||
Sbjct 121 GCTGCGTAAAATCATCTCCGTGGCTTCAATCGCCGCCGGTGTACAGTTTGGGTGGGCCTT 180
Query 291 ACAGTTATCTCTGT-TGACTCCTTACGTGCAGCTACTCGGAATCCCACATAAATGGGCTT 349
|||| | ||||| | ||||||||||||| || || ||||||||||| || |||||| | |
Sbjct 181 ACAGCTCTCTCT-TCTGACTCCTTACGTACAACTTCTCGGAATCCCTCACAAATGGTCGT 239
Query 350 CTCT-GATTTGGCTCTGTGGTCCAATCTCCGGTATGCTTGTTCAGCCTATCGTCGGTTAC 408
|| | || |||||||||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 240 CT-TACATGTGGCTCTGTGGTCCTATCTCCGGCATGCTTGTTCAACCAATCGTCGGTTAC 298
Query 409 CACAGTGACCGTTGC-ACCTCAAGATTCGGCCGTCGTCGTCCCTTCATCGTCGCTGGAGC 467
||||||||||| ||| | || |||||||| || |||||||| ||||||| | | |||||
Sbjct 299 CACAGTGACCGATGCGA-GTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGC 357
Query 468 TGGT-TTAGTCA-CCGT-TGCTGTTTTCCTTATCGG-TTACGCTGCCGATATAGGTCACA 523
|| | || | |||| | | |||||||||||||| || ||| || ||||| || || |
Sbjct 358 -CGTACTCGT-AGCCGTCT-CGGTTTTCCTTATCGGATT-CGCGGCGGATATGGGACATA 413
Query 524 GCATGGGCGATCAGCTTGACAAACCGCCG-AA-AACGCGAGCCA-TAGCGATATTCGC-T 579
| | || ||| | || || || | | || || ||||||| || || ||| | |
Sbjct 414 GTTTTGGAGATAAACTCGA-GAA-CAAGGTAAGGACTCGAGCCATTA-TAATCTTC-CTT 469
Query 580 -CTCGGGTTTTGGATTCTTGACGTGGCTAACAACACCTTACAAGGACCCTGCAGAGCTTT 638
| |||||||||| | |||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 470 AC-CGGGTTTTGGGTCCTTGACGTGGCTAACAACACCTTACAAGGACCATGCCGTGCTTT 528
Query 639 CTTGGCTGATTTATCAGCAGGGA-ACGCTAAGAAAACGCGAACCGCAAACGCGTTTTTCT 697
||| || |||||| | || ||| ||||||| ||||||||| ||||||||| | |||||
Sbjct 529 CTTAGCCGATTTAGCCGC-CGGAGACGCTAAAAAAACGCGAGTCGCAAACGCATGTTTCT 587
Query 698 CGTTTTTCATGGCGGTTGGAAACGTTTTGGGTTACGCTGCGGGATCTTACAGAAATCT-C 756
| ||||| |||||||||||||||||||||||||||||||| |||||||||| || || |
Sbjct 588 CTTTTTTTATGGCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTC 647
Query 757 TACAAA--GTTGTGCCTTTCACGATGACTGA-GTCATGCGATCTCTACTGCGCAAACCTC 813
||||| ||| | |||||||| ||||| | | | |||||| |||| ||||| || |||
Sbjct 648 -ACAAAATGTT-T-CCTTTCACAATGACAAAAG-CTTGCGATGTCTATTGCGCGAATCTC 703
Query 814 AAAACGTGTTTTTTCCTATCCATAACGCTTCTCCTCATAGTCAC-TT-TCGTATCTCTCT 871
|| || ||||| ||||||||||| || || ||||| || |||| || |||| |||| |
Sbjct 704 AAGACTTGTTTCTTCCTATCCATCACTCTCCTCCTTATCCTCACCTTCTCGT--CTCTAT 761
Query 872 GTTACGTGAAGGAGAAGCCATGGACGCCAGAGCCAACA-GCCGAT---G-GAAAAGCCTC 926
| ||||| || || || | |||| | || | ||| || | || | ||||| | ||
Sbjct 762 GGTACGTTAAAGACAAACAATGGTCTCC-G--CCA-CATGGAGAGAAAGAGAAAA-CATC 816
Query 927 CAAC-GTTCCGTT-TTTCGGAGAAATCTTCGGAGCTTTCA-AGGAACTAAAAAGACCCAT 983
|| ||| || ||| ||||||||||| |||||| ||| || | | ||| | |||||
Sbjct 817 -AAGTGTTTTTTTCTTT-GGAGAAATCTTTGGAGCTGTCAGAGTCA-TGAAACGTCCCAT 873
Query 984 GTGGATGCTTCTTATAGTCACTGC-ACTAAACTGGATCGCTTGGTTCCC-TTTCCTTCTC 1041
|||||||||||| || ||||| | | ||| |||||||||||||| || |||| || |
Sbjct 874 GTGGATGCTTCTAATGGTCACGGTTATTAAT-TGGATCGCTTGGTTTCCGTTTCTTT-TG 931
Query 1042 TTCGACACTGATTGGATGGGCCGTGAGGTGTACGGAGGAAACTCAGACGCAACCGCAACC 1101
| ||| || ||||||||||| ||||| |||||||| ||||| ||||| | || | |
Sbjct 932 TACGATACCGATTGGATGGGTCGTGAAGTGTACGGTGGAAATTCAGATGGAAATG-A--- 987
Query 1102 GCA-GCCTCTAAGAAGCTTTACAACGACGGAGT-CAGAGCTGGTGCTTTGGGGCTT-ATG 1158
||| ||| ||||| |||||| || | ||||| ||| |||||||| ||||| || |||
Sbjct 988 GCAAGCC---AAGAAACTTTACGACCAAGGAGTTCAG-GCTGGTGCATTGGGA-TTGATG 1042
Query 1159 CTTAACGCTATTGTTCTTGGTTTCATGTCTCTTGGTGTTGAATGGATTGGTCGGAAATTG 1218
|||| | || ||||||||||| |||| ||||||||||||| ||||||||||||| ||
Sbjct 1043 TTTAATTCAATACTTCTTGGTTTCGTGTCACTTGGTGTTGAATCGATTGGTCGGAAAATG 1102
Query 1219 GGAGGAGCTAAAAGGCTTTGGGGTAT-TGTTAACTTCATCCTCGCCATTTGCTTGGCCAT 1277
|||||||||||| | |||||||| || ||| || ||||| |||||||| | ||||||||
Sbjct 1103 GGAGGAGCTAAACGACTTTGGGG-ATGTGTGAATTTCATACTCGCCATAGGTTTGGCCAT 1161
Query 1278 GACGGTTGTGGTTACGAAA-CAAGCTGAGAATCACCGACGAGATCACGGCGGCGCTAAAA 1336
||||||| | |||||| || | ||||| || ||||| || | | || ||| |||
Sbjct 1162 GACGGTTCTTGTTACGCAATCC-GCTGATAACCACCG--GAAAAC-CGCCGGTGCTTTGT 1217
Query 1337 CAGGTCC-ACC--TGGTAACGTCACAGCTGGTGC-TTTAACTCTCTTCGCCATCCTCGGT 1392
| || || | | ||||| | | ||| || | |||| |||||| || | || |||
Sbjct 1218 CCGGACCGAGCAGTGGTAT--TAA-AGCCGGAGTATTTAG-TCTCTTTACCGTTCTTGGT 1273
Query 1393 ATCCCCCAAGCCATTACGTTT-AGCATTCCTTTTGCACTAGCTTCCATATTT-TCAACCA 1450
||||| |||||||| || || |||| ||||||||||| ||||| ||| |||||||
Sbjct 1274 ATCCCATTGGCCATTAC-TTACAGTGTTCCATTTGCACTAGCGTCCAT-TTTCTCAACCA 1331
Query 1451 ATTCCGGTGCCGGCCAAGGACTTTCCCTAGGTGTTCTGAATCTAGCCATT-GTCGTCCCT 1509
||||||||||||||||||||||||| ||||| ||| | ||| |||| ||| || | ||
Sbjct 1332 ATTCCGGTGCCGGCCAAGGACTTTCTCTAGGCGTTTTAAATATAGCGATTTGTA-TACCA 1390
Query 1510 CAGATGGTAATATC-TGTGGGAGGTGGACCATTCGACGAACTA-TTCGGTGGTGGAAACA 1567
|| ||| || |||| | | | |||||||||| |||| | | ||||| |||||||||
Sbjct 1391 CAAATGATAGTATCAT-TCTCAAGTGGACCATTGGACGCTC-ACTTCGGCGGTGGAAACC 1448
Query 1568 TTCCAGCATTTGTGTTAGGAGCGATTGCGGCAGCGGTAAGTGGTGTATTGGCGTTGACGG 1627
| || |||||||| | ||||| |||||||| ||| | ||||| || || ||||| || |
Sbjct 1449 TACCTTCATTTGTGGTCGGAGCTATTGCGGCTGCGATTAGTGGAGTGTTAGCGTTAACCG 1508
Query 1628 TGT-TGCCTTCACCGCCTCCGGATGCTCCTGCC-T-TCAAAGCTACTATGGGATTTCATT 1684
| | | |||||||||||| |||| || || ||| | ||| | |||||||||| ||||
Sbjct 1509 T-TCTACCTTCACCGCCTGCGGACGCACCAGCCATGTCAGGGG--CTATGGGATTCCATT 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5