BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22740.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912129 jgi|Araly1|912129|Al_scaffold_0001_2383 981 0.0
> Ahg912129 jgi|Araly1|912129|Al_scaffold_0001_2383
Length=618
Score = 981 bits (531), Expect = 0.0
Identities = 591/619 (95%), Gaps = 8/619 (1%)
Strand=Plus/Plus
Query 148 ATGTCGACGCGAAGACGAACTTTACTCAAAGTTATAATTCTTGGAGACAGCGGGGTTGGC 207
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCGATGCGAAGACGAACTTTACTCAAAGTTATCATTCTTGGAGACAGCGGGGTTGGC 60
Query 208 AAAACATCGTTGATGAATCAATATGTGAATAACAAGTTTAGTCAACAGTACAAAGCTACG 267
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AAAACATCGTTGATGAATCAATATGTGAATAACAAGTTTAGTCAGCAGTACAAAGCTACG 120
Query 268 ATCGGAGCTGATTTTGTCACTAAGGAGCTTCAAATTGATGACAGGCTTGTCACATTGCAA 327
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATCGGAGCTGATTTTGTCACTAAGGAGCTTCAAATTGATGACAGGCTTGTCACATTACAA 180
Query 328 ATATGGGACACTGCTGGGCAAGAGAGGTTTCAAAGTCTTGGTGTTGCTTTCTATAGAGGT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATATGGGACACTGCTGGGCAAGAGAGGTTTCAAAGTCTTGGTGTTGCTTTCTATAGAGGT 240
Query 388 GCAGATTGTTGTGTTCTTGTCTATGATGTGAATCACTTGAAGTCATTTGAATCTCTCGAC 447
||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct 241 GCAGATTGTTGTGTTCTTGTCTATGATGTCAATTACTTGAAGTCGTTTGATTCTCTCGAC 300
Query 448 AATTGGCACAACGAGTTTCTTACACGGGCTAGTCCACGTGACCCAATGGCATTCCCTTTT 507
||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 301 AATTGGCACGACGAGTTTCTTAAACGGGCTAGTCCACGTGATCCAATGGCATTCCCTTTT 360
Query 508 ATACTTCTTGGTAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGAGAAG 567
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ATACTTCTCGGTAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGATAAG 420
Query 568 AAGGCTAGAGAATGGTGTGCTGAAAAGGGAAACATAGTCTATTTCGAGACATCGGCTAAA 627
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAGCTAGAGAATGGTGTGCTGAAAAGGGAAACATAGTCTATTTCGAGACATCGGCTAAA 480
Query 628 GAAGA-TTACAATGTCGATGACTCCTTCTTGTGCATCACAAAACTTGCCCTTGCAAATGA 686
|| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 481 GA-GAATTACAATGTCGATGACTCTTTCTTGTGCATCACAAAACTTGCCCTTGCCAATGA 539
Query 687 ACGCGACCAAGATATATATTTCCA-G-----CCAGATACTGGTTCGGTGCCTGAGCAAAG 740
|||||||||||||||||||||||| | ||||| |||||||||| | |||| |||||
Sbjct 540 ACGCGACCAAGATATATATTTCCAAGGGATTCCAGAGACTGGTTCGGAGTCTGAACAAAG 599
Query 741 AGGAGGTTGTGCTTGCTGA 759
|||||||||||||||||||
Sbjct 600 AGGAGGTTGTGCTTGCTGA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5