BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22760.1
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335514 jgi|Araly1|335514|fgenesh1_pg.C_scaffold_1002079 3025 0.0
> Ahg335514 jgi|Araly1|335514|fgenesh1_pg.C_scaffold_1002079
Length=1980
Score = 3025 bits (1638), Expect = 0.0
Identities = 1868/1981 (94%), Gaps = 8/1981 (0%)
Strand=Plus/Plus
Query 275 ATGGCGGCGGCGGTTGCCACAGGTGTTGCACCGGCGACAATGGTTGATCAAGTTCCCAGT 334
||||||||||||||||| || ||||| |||||||| ||||||||||||||| |||| |||
Sbjct 1 ATGGCGGCGGCGGTTGCGACGGGTGTCGCACCGGCAACAATGGTTGATCAAATTCCGAGT 60
Query 335 CCGACGGCGCAGACTTCGGTTCAGGTTCCGGTTTCAATACCT-CTTCCATCCCCGGTC-G 392
|||||||| |||||||||||||||||||||||||| |||||| | |||||| |||| | |
Sbjct 61 CCGACGGCTCAGACTTCGGTTCAGGTTCCGGTTTCGATACCTGC-TCCATCTCCGG-CAG 118
Query 393 TGGTAGCCGATCAAACCCA-CCCGAACTCGTCGCTCTATGCCGGTGATCTGGACCCGAAA 451
||| ||||||||||| || ||| ||||||||||||||||| || ||| ||||||| |||
Sbjct 119 CGGTTGCCGATCAAACACATCCC-AACTCGTCGCTCTATGCGGGAGATTTGGACCCAAAA 177
Query 452 GTTACTGAAGCACATCTATTTGATTTGTTCAAACATGTTGCTAATGTCGTCTCGGTAAGA 511
|| |||||||| ||||| || ||||||||||| ||||| |||||||| || |||||||||
Sbjct 178 GTGACTGAAGCGCATCTGTTCGATTTGTTCAAGCATGTCGCTAATGTTGTTTCGGTAAGA 237
Query 512 GTTTGCCGCGATCAGAATCGTCGATCTTTGGGATATGCCTACATCAATTTCAGTAACCCT 571
||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GTTTGTCGTGACCAGAATCGTCGATCCTTGGGATATGCCTACATCAATTTCAGTAACCCT 297
Query 572 AACGATGCTTACCGTGCAATGGAGGCCTTGAACTACACTCCCCTCTTTGATAGGCCCATT 631
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 298 AATGATGCTTACCGAGCAATGGAGGCTTTGAACTACACTCCCCTCTTTGAAAGGCCCATT 357
Query 632 CGGATCATGCTTTCGAACCGTGACCCAAGCACGCGATTGAGCGGCAAAGGAAACATTTTC 691
||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 358 CGGATCATGCTCTCGAACCGTGATCCGAGCACACGATTGAGCGGCAAAGGAAACATTTTC 417
Query 692 ATCAAAAACCTTGACGCTTCAATCGACAACAAGGCCTTGTTCGAGACGTTTTCAAGTTTT 751
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 418 ATCAAAAACCTTGATGCTTCAATCGACAACAAGGCATTGTTCGAGACGTTTTCAAGTTTT 477
Query 752 GGAACCATCCTCTCATGCAAAGTTGCAATGGACGTGACTGGCCGGTCCAAGGGGTATGGA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAACCATCCTCTCATGCAAAGTTGCAATGGACGTGACTGGCCGGTCCAAGGGGTATGGA 537
Query 812 TTTGTCCAGTTCGAGAAGGAGGAATCGGCTCAAGCCGCAATTGACAAGCTAAACGGAATG 871
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 538 TTTGTCCAGTTTGAGAAGGAGGAATCGGCTCAAGCTGCAATTGACAAGCTAAACGGGATG 597
Query 872 TTAATGAACGACAAGCAAGTTTTTGTGGGACACTTCATCAGACGTCAAGAGCGTGCTCGT 931
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 598 CTAATGAACGACAAGCAAGTCTTTGTGGGACACTTCATCAGACGTCAAGAACGTGCTCGT 657
Query 932 GATGAAAACACCCCTACACCGCGTTTCACTAACGTGTACGTCAAGAATCTCCCCAAGGAG 991
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GATGAAAACACCCCTACACCGCGTTTCACTAATGTGTACGTCAAGAATCTCCCCAAGGAG 717
Query 992 ATTGGTGAGGACGAGCTACGAAAAACGTTTGGTAAATTTGGAGTGATATCGAGCGCAGTT 1051
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 ATTGGTGAGGACGAGCTACGAAAAACGTTTGGTAAATTTGGAGTGATATCGAGCGCGGTT 777
Query 1052 GTAATGAGGGACCAGAGCGGAAACTCGAGGTGTTTCGGGTTTGTGAATTTTGAGTGCACT 1111
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 778 GTAATGAGGGACCAGAGCGGGAACTCGAGGTGTTTTGGGTTTGTGAACTTTGAGTGTACT 837
Query 1112 GAAGCAGCGGCTTCGGCGGTTGAGAAGATGAATGGAATTAGCTTAGGGGATGATGTGTTG 1171
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAGCAGCGGCTTCCGCGGTTGAGAAGATGAATGGAATTAGCTTAGGGGATGATGTGTTG 897
Query 1172 TACGTTGGGAGGGCGCAAAAGAAGTCTGAGAGAGAGGAAGAGCTAAGAAGGAAGTTTGAG 1231
|||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 898 TACGTTGGGAGGGCTCAAAAGAAGTCTGAGAGAGAAGAAGAGTTAAGAAGAAAGTTTGAG 957
Query 1232 CAAGAGAGGATAAACCGGTTTGAGAAATCTCAAGGAGCGAACCTGTATTTGAAGAATCTT 1291
| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 958 TAGGAGAGGATAAACCGGTTTGAGAAATCACAAGGAGCGAATCTGTATTTGAAGAATCTT 1017
Query 1292 GATGATAGTGTTGATGATGAGAAACTCAAGGAGATGTTCTCTGAGTATGGAAATGTGACA 1351
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1018 GATGATAGCGTCGATGATGAGAAACTCAAGGAGATGTTCTCTGAATATGGAAATGTAACA 1077
Query 1352 TCCTCCAAGGTTATGCTTAATCCACAAGGAATGAGCAGAGGATTTGGTTTTGTTGCTTAT 1411
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1078 TCTTCCAAGGTTATGCTTAATCCACAAGGATTGAGCAGAGGATTTGGTTTTGTTGCTTAT 1137
Query 1412 TCCAATCCTGAAGAAGCTTTAAGAGCCCTGAGTGAAATGAATGGGAAGATGATCGGAA-G 1470
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1138 TCTAATCCTGAAGAAGCTTTAAGAGCACTGAGTGAAATGAATGGGAAGATGATAGGAAAG 1197
Query 1471 AAAACCTCTATACATAGCTCTTGCGCAGCGCAAAGAAGATAGACGAGCACACTTACAGGC 1530
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 AAA-CCACTATACATAGCTCTTGCGCAGCGCAAAGAAGATAGACGAGCACACTTACAAGC 1256
Query 1531 GTTGTTTTCACAGATTAGAGCACCAGGGCCAATGTCAGGGTTCCATCACCCGCCAGGTGG 1590
| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1257 GCTATTTTCACAGATAAGAGCACCAGGGCCAATGTCGGGGTTCCATCACCCGCCAGGTGG 1316
Query 1591 ACCAATGCCCGGTCCACCTCAACACATGTACGTAGGCCAAAACGGAGCAAGTATGGTCCC 1650
||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 1317 ACCAATGCCGGGTCCACCTCAGCACATGTACGTAGGCCAGAACGGAGCAAGTCTGGTCCC 1376
Query 1651 GTCCCAGCCCATTGGATATGGATTCCAGCCTCAGTTCATGCCCGGGATGCGTCCAGGTTC 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTCCCAGCCCATTGGATATGGATTCCAGCCTCAGTTCATGCCCGGGATGCGTCCAGGTTC 1436
Query 1711 TGGCCCGGGCAACTTCATCGTGCCTTATCCGCTTCAAAGACAACCTCAGACCGGTCCTCG 1770
|||||||||||||||| || |||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1437 TGGCCCGGGCAACTTCGTCATGCCTTATCCTCTTCAGAGACAACCTCAAACCGGTCCTCG 1496
Query 1771 TATGGGATTCAGGCGTGGTGCTACTAACGTGcaacaacacatccaacaacaacaacTTAT 1830
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1497 TATGGGATTCAGGCGTGGTGCTACTAACATGCAACACCACATCCAACAACAACAACTTAT 1556
Query 1831 GCACCGTAACCCGTCCCCGGGAATGAGATATATGAACGGTGCGAGTAACGGGAGGAACGG 1890
| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1557 GAACCGTAACCCGACCCCGGGAATGAGATATATGAACGGTGAGGGTAACGGGAGGAACGG 1616
Query 1891 AATGGATTCGAGTGTTCCTCAAGGAATCTTACCTCCTATCATTCCTTTGCCAATAGATGC 1950
|||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1617 AATGGATTCGAGTGTTCCGCAAGGAATCTTGCCTCCAATCATGCCTTTGCCAATAGATGC 1676
Query 1951 TTCTTCGATCTCTCACCAGAAAGCTCCTCTCCTTCCAATCTCTAAGCTCACTTCTTCCTT 2010
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1677 TTCTTCAATTTCTCACCAGAAAGCTCCTCTCCTTCCAATATCTAAGCTCACTTCTTCTTT 1736
Query 2011 AGCTTCTGCTAGTCCAGCTGATCGCACTCGGATGCTTGGAGAACAACTGTACCCACTTGT 2070
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1737 AGCTTCTGCTAGTCCAGCTGATCGCACTCGGATGCTTGGAGAGCAACTTTACCCACTTGT 1796
Query 2071 GGAAAGGCACGAACCACTTCACGTGGCTAAAGTCACAGGAATGTTGTTGGAGATGGATCA 2130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 GGAAAGGCACGAACCACTTCACGTGGCTAAAGTCACAGGAATGTTGTTGGAGATGGATCA 1856
Query 2131 AGCTGAGATCTTGCACCTGATGGAGTCACCAGAGGCACTCAAGTCTAAAGTATCCGAGGC 2190
||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1857 AGCCGAGATCCTGCACTTGATGGAGTCACCAGAGGCACTCAAGTCTAAAGTATCTGAGGC 1916
Query 2191 TTTGGATGTTCTCAGGCTATCTGTTGATCCAACTGATCATGATCTTGGTTTCTCTACCAC 2250
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1917 TTTGGATGTTCTCAGGCTATCTGTTGATCCACCTGATCATGAGCTTGGTTTCTCTACCAC 1976
Query 2251 C 2251
|
Sbjct 1977 C 1977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93206829515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5