BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22780.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472522 jgi|Araly1|472522|fgenesh2_kg.1__2476__AT1G22780.1 1061 0.0
Ahg489832 jgi|Araly1|489832|fgenesh2_kg.6__2966__AT4G09800.1 534 3e-151
> Ahg472522 jgi|Araly1|472522|fgenesh2_kg.1__2476__AT1G22780.1
Length=768
Score = 1061 bits (574), Expect = 0.0
Identities = 685/735 (93%), Gaps = 21/735 (3%)
Strand=Plus/Plus
Query 1 TCATATTAGGTTGGAAAACCCT-AA--A--TATGCCGCTTATAACAGACCTGA---GCTT 52
|||||||||||| ||||||||| || | || |||||||||||||||||||| |||
Sbjct 1 TCATATTAGGTTCGAAAACCCTAAAGGAGTTACGCCGCTTATAACAGACCTGACCTTCTT 60
Query 53 AAGCTGTGGTGGCGCCTCCAGAGTCTGGTAAAAGAGCTTAATCCTCCTCTCGCGATCTTT 112
|| ||||||||||||||||||||||| || ||||||||||||||| | |||||||||||
Sbjct 61 AACCTGTGGTGGCGCCTCCAGAGTCT-GTGAAAGAGCTTAATCCTTGTATCGCGATCTTT 119
Query 113 CTCGGCATCCAAAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTCTGCGTGTGC 172
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 CTCGGCATCCAAAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTTTGCGTGTGC 179
Query 173 TCAATACTAATGTCGATGGGAAGCAAAAAATTATGTTTGCTTTGACCTCAATCAAGGGTA 232
|||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 180 TCAACACTAATGTCGATGGGAAGCAAAAGATTATGTTTGCCTTGACCTCGATCAAGGGTA 239
Query 233 TTGGAAGGCGATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGG 292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGGAAGGCGATTGGCCAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGG 299
Query 293 CTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCC 352
||||||||||||||||||| || || || |||||||||||||||||||| |||||||| |
Sbjct 300 CTGGAGAACTAAGTGCTGCAGAAATCGACAACCTCATGACAATCGTTGCGAACCCTCGTC 359
Query 353 AGTTCAAGATCCCAGACTGGTTTCTT-AACAGACAAAAGGATTACAAGGATGGGAAATAC 411
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 360 AGTTCAAGATCCCAGACTGG-TTCTTGAACAGGCAAAAGGATTACAAGGATGGGAAATAC 418
Query 412 TCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAG 471
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 419 TCCCAAGTTGTTTCCAATGCTCTGGACATGAAGCTGAGAGATGATCTTGAGCGTCTCAAG 478
Query 472 AAGATCAGAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCAC 531
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGATCAGGAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCAC 538
Query 532 ACCAAAACCACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAGCGTTAAAAA-GA 590
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 539 ACCAAAACCACCGGACGACGTGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTAAAAAAGA 598
Query 591 GTTTGAGCTTGGTTCAATGGCtttgttttgttttttttgtattgttgttttttgCAGAAG 650
||| | ||||||||||||||||||| |||||||| |||||||| |||| |||||||
Sbjct 599 GTTGGTGCTTGGTTCAATGGCTTTGCTTTGTTTT----GTATTGTT-TTTT--GCAGAAG 651
Query 651 AGATAGTTTAAG-AGATGTTGTTTCATCAAAAGACGGTCTTAGCTTTTACAATATATAAT 709
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGATAGTTTAAGCA-ATGTTGTTTCATCAAAAGACGGTCTTAGCTTTTACAATATATAAT 710
Query 710 TGAATCCAAAAACTA 724
|||||||||||||||
Sbjct 711 TGAATCCAAAAACTA 725
> Ahg489832 jgi|Araly1|489832|fgenesh2_kg.6__2966__AT4G09800.1
Length=693
Score = 534 bits (289), Expect = 3e-151
Identities = 408/466 (88%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 124 AAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTCTGCGTGTGCTCAATACTAAT 183
||||||||||| ||||| || |||||||||||||| ||||| |||||| | || || |||
Sbjct 104 AAAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTCTTCGTGTGTTGAACACAAAT 163
Query 184 GTCGATGGGAAGCAAAAAATTATGTTTG-CTTTGACCTCAATCAAGGGTATTGGAAGGCG 242
|| ||||| ||||| || |||||||||| | || ||||| ||||| |||||||| |||||
Sbjct 164 GTTGATGGTAAGCAGAAGATTATGTTTGCCCTT-ACCTCTATCAAAGGTATTGGGAGGCG 222
Query 243 ATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAACT 302
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 223 ATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTT 282
Query 303 AAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGAT 362
| ||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 283 ATCTGCTGCTGAGATTGACAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGAT 342
Query 363 CCCAGACTGGTTTCTT-AACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTG 421
|||||||||| ||||| ||||| || ||||||||||| ||||| || || || |||||||
Sbjct 343 CCCAGACTGG-TTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTG 401
Query 422 TTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGAA 481
| |||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 402 TCTCCAATGCACTGGACATGAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAA 461
Query 482 ACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGT-ACGTGGACAGCACACCAAAACC 540
||||||||||||||||||| ||||||||||||||||| | | ||||| |||||||| ||
Sbjct 462 ACCATCGTGGTCTGAGGCATTACTGGGGTCTCCGTGTGA-GAGGACAACACACCAAGACT 520
Query 541 ACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAGCGTTAAA 586
|| || ||| | ||||||||||||||||| || |||||||||||||
Sbjct 521 ACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCAAAGAAGCGTTAAA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5