BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22790.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921304 jgi|Araly1|921304|scaffold_102585.1 1114 0.0
> Ahg921304 jgi|Araly1|921304|scaffold_102585.1
Length=686
Score = 1114 bits (603), Expect = 0.0
Identities = 665/693 (96%), Gaps = 12/693 (2%)
Strand=Plus/Plus
Query 249 CAGATGAATAGAGCAACTAATGTTACTGGCAGTAGAAGGAGGGGGTTTATTCTCAGCGTC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CAGATGAATAGAGCAACTAATGTTACTGGCAGTAGAAGGAGGGGGTTTATTCTCAGCGTC 62
Query 309 CGCGTCTGGGTATAGTAAGGGATTGACCCTTCTTTTCTCTGGTGATAAAGACGTAGATAG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 63 CGCGTCTGGGTATAGTAAGGGATTGACCCTTCTTTTCTCTGGTGATAAAGACGGAGATAG 122
Query 369 GCCCATGAGAGTTGTCCCGTGGAATCACTACCAGGTGGTTGACCAAGAGCCTGAGGCTGA 428
||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 123 GCCCATGAGAGTTGTGCCGTGGAATCACTACCAGGTGGTTGACC-A-A----GAGGCTGA 176
Query 429 CCCTGTTCTTCAGCTGGATTCTATTAAGAACCGAGTTTCCCGCGGTTGCGCTGCTTCCTT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCCTGTTCTTCAGCTGGATTCTATTAAGAACCGAGTTTCCCGCGGTTGCGCTGCTTCCTT 236
Query 489 CAGTTGTTTTGGTGGCGCTTCCGCGGGACTTGAGACCCCTTCTCCTCTTAAAGTTGAACC 548
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 237 CAGTTGTTTTGGTGGCGCTTCCGCGGGACTTGAGAGCCCATCTCCTCTTAAAGTAGAACC 296
Query 549 TGTGCAGCAGCAGCATCGTGAAATATCATCACCAGAG--T-CTGTTGTTGTTGTTTCTGA 605
||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 297 TGT---GCAGCAGCATCGTGAATTATCATCACCAGAGTCTGCTGTTGTTGTTGTTTCTGA 353
Query 606 AAAGGGTAAAGACCAAATAAGTGAAGCTGATAATGGCAGCAGCAAAGAAGCTTTCAAACT 665
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AAAGGGCAAAGACCATATAAGTGAAGCTGATAATGGCAGCAGCAAAGAAGCTTTCAAACT 413
Query 666 CTCGTTGAGGAGTAGCTTGAAGAGGCCCTCTGTTGCGGAATCACGCTCTCTAGAAGATAT 725
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct 414 CTCATTGAGGAGTAGCTTGAAAAGGCCGTCTGTTGCGGAATCACGCTCTCTTGAGGATAT 473
Query 726 AAAAGAATACGAGACGTTGAGTGTGGATGGTAGCGATCTCACTGGTGACATGGCAAGGCG 785
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACAAGAATACGAGACGTTGACTGTGGATGGTAGCGATCTCACTGGTGACATGGCAAGGCG 533
Query 786 GAAAGTTCAGTGGCCTGATGCTTGTGGTAGTGAACTCACTCAAGTTAGAGAATTTGAGCC 845
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAAAGTTCAGTGGCCAGATGCTTGTGGTAGTGAACTCACTCAAGTTAGAGAATTTGAGCC 593
Query 846 GAGTGAGATGGGATTATCAGATGAAGAATGGGAGGTAGGACGACAAAGAACATGTTCGTG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAGTGAGATGGGATTATCAGATGAAGAATGGGAGGTAGGACGACAAAGAACATGTTCGTG 653
Query 906 TGTGATCATGTAAATTCAGAAATCATCGGTATC 938
|||||||||||||||||||||||||||||||||
Sbjct 654 TGTGATCATGTAAATTCAGAAATCATCGGTATC 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5