BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22800.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921305 jgi|Araly1|921305|scaffold_102586.1 1711 0.0
> Ahg921305 jgi|Araly1|921305|scaffold_102586.1
Length=1110
Score = 1711 bits (926), Expect = 0.0
Identities = 1043/1100 (95%), Gaps = 6/1100 (1%)
Strand=Plus/Plus
Query 78 AGATAGAGATGCGGAGGATCAATTCACTGTACGGAAGAATTGGTCT-CCTAAAACGAGTA 136
||||||||||| |||||||||||||||||||||||||||||||| | | || | |||||
Sbjct 13 AGATAGAGATGTGGAGGATCAATTCACTGTACGGAAGAATTGGTATGCTTAGGA-GAGTA 71
Query 137 CCCG-AGAAATCTACGAAGCAAGCTCATACATTTCTCGCATCTCTCTCCTTCTCTACGGA 195
|||| || ||||||||||| || |||||||||| ||||| ||||||||||||||||||||
Sbjct 72 CCCGAAG-AATCTACGAAGAAATCTCATACATTGCTCGCCTCTCTCTCCTTCTCTACGGA 130
Query 196 AGGT-GCTTATGGCGGTGACGGTGAGTTTCAGCAGAACAGCTCCAAAGTCAAGATCTTTG 254
|||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 131 AGGTAG-TTATGGCGGTGACGGTGAGCTTCAGCAGAACAGCTCCAAAGTCAAGATCTTTG 189
Query 255 ACCGAGACCTCAAGCGAATACATCGTGATCGAGCGGCGTGGCTTTCTCGCCaaaaaaaCG 314
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 ATCGAGATCTCAAGCGAATACATCGTGATCGAGCGGCGTGGCTTTCTCGCCAAAAAAACG 249
Query 315 ATTCTTTTGTTGACGCTGTTGCAGATAATCTACTTGATCGCTTAGAGGATTGTAAGAAGA 374
|||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 250 ATTCCTTTGTCGACGCTGTTGCAGAGAATCTACTTGACCGCTTAGAGGATTGTAAGAAGA 309
Query 375 GTTTTCCCACTGCATTTTGTTTGGGAGGATCTCTTGGTGCTGTTAAGAGATTACTACGTG 434
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 310 GCTTTCCCACTGCATTTTGTTTGGGAGGATCTCTTGGTGCTGTTAAGCGATTACTACGTG 369
Query 435 GTCGCGGTGGGATTGAGAAGCTTATCATGATGGATACTTCATATGACATGATTAAGTCAT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 370 GTCGCGGTGGGATTGAGAAGCTTATCATGATGGATACTTCATATGACATGATTAAATCAT 429
Query 495 GTAGAGATGCTCAAGACGATTCACTCGATAACTCCATTGAAACCTCTTACTTTGTTGGTG 554
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 430 GTAGAGATGCTCAAGAGGATTCACTCGATAACTCCATTGAAACATCTTATTTTGTTGGTG 489
Query 555 ATGAAGAGTTTCTGCCAGTCAAAGAGAGTTCGGTTGATTTGATCATTAGTTCGTTGGGGC 614
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 490 ATGAAGAGTTTCTGCCAGTCAAAGAGAGTTCGGTTGATTTGATCATAAGTTCGTTGGGGC 549
Query 615 TTCACTGGACAAATGATCTTCCTGGATCCATGATACAGTGCAAGCTAGCACTGAAGCCGG 674
|||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 550 TTCATTGGACAAATGATCTTCCTGGTTCCATGATACAGTGCAAACTAGCGCTGAAGCCTG 609
Query 675 ATGGCTTATTTTTAGCAGCAATTCTTGGTGGAGAAACCTTAAAGGAGCTGAGAATAGCAT 734
||||| ||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 610 ATGGCCTATTTTTAGCAGCGATTCTTGGCGGAGAGACCTTAAAGGAACTGAGAATAGCAT 669
Query 735 GCACTTTGGCTCACATGGAGCGGGAAGGAGGGATTAGTCCTCGGCTATCACCTTTGGCAC 794
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 670 GCACTTTGGCTCACATGGAGCGGGAAGGAGGCATTAGTCCCCGGCTATCGCCTTTGGCAC 729
Query 795 AGGTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATG 854
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 730 AGGTCAGGGACGCAGGGAATCTCTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGACG 789
Query 855 TTGATGAATATGTAGTTAAATACAAGAGAGCGATGGATCTTATAGAGCATCTTCGTGCGA 914
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 790 TTGATGAATATGTAGTTAAATACAATAGTGCGATGGATCTTATAGAGCATCTTCGTGCGA 849
Query 915 TGGGTGAAACCAATGCTCTTCTCGAGAGAAACAAGATTTTGAATCGTGAAACTGCTGTTG 974
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 850 TGGGTGAAACAAATGCTCTTCTCGAGAGAAACAAGATTTTGAATCGCGAAACTGCTCTTG 909
Query 975 CCACGGCAGCCATATATGACTCCATGTTTGCCACAGAGGACGGCACTATACCCGCTACTT 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 910 CCACGGCAGCCATATATGACTCCATGTTTGCCACAGAGGACGGCACTATACCTGCTACTT 969
Query 1035 TTCAGGTGATTTACATGACAGGATGGAGAGAACATTCGTCTCACCCGCAGGCCAAACGAA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TTCAGGTGATTTACATGACAGGATGGAGAGAACATTCGTCTCACCCGCAGGCCAAACGAA 1029
Query 1095 GAGGTTCAGCCACCGTATCCTTCACGGATCTCCAAAAGCAATTTGGCGGACAATCTTGAT 1154
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 1030 GAGGTTCAGCCACCGTATCCTTCACTGATCTCCAGAAGCAATTTGGCGGTCAATCCTGAT 1089
Query 1155 GGAATGATTGAAGAAGAGAA 1174
||||||||| |||| |||||
Sbjct 1090 GGAATGATTAAAGAGGAGAA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5