BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22810.1

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921306 jgi|Araly1|921306|scaffold_102587.1                        555    2e-157


> Ahg921306 jgi|Araly1|921306|scaffold_102587.1
Length=484

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 408/457 (89%), Gaps = 19/457 (4%)
 Strand=Plus/Plus

Query  62   ACAAAAAATGGATTACAGAGAATCCACCGGTGAAAGTCAGTCAAAGTACAAAGGAATCCG  121
            |||||||||||||||||||| |  | ||||||||| ||||||||||||||||||||||||
Sbjct  14   ACAAAAAATGGATTACAGAG-A--CGCCGGTGAAACTCAGTCAAAGTACAAAGGAATCCG  70

Query  122  TCGTCGGAAATGGGGCAAATGGGTATCAGAGATTAGAGTTCCGGGAACTCGTGACCGTCT  181
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  71   TCGTCGGAAATGGGGCAAATGGGTATCGGAGATTAGAGTTCCGGGAACTCGTGACCGTCT  130

Query  182  CTGGTTAGGTTCATTCTCAACAGCAGAAGGTGCCGCCGTAGCACACGACGTTGCTTTCTT  241
            ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct  131  CTGGTTAGGTTCATTCTCAACCGCCGAAGGCGCCGCCGTAGCACACGACGTTGCTTTCTT  190

Query  242  CTGTTTACACCAACCTGATTCTTTAGAATCTCTCAATTTCCCTCATTTGCTTAATCCTTC  301
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  191  CTGTTTACACCAACCTGATTCGTTAGAATCTCTCAATTTTCCTCATTTGCTTAATCCTTC  250

Query  302  ACTCGTTTCCAGAA-CTTCTCCGAGATCTATCCAGCAAGCTGCTTCTAACGCCGGCATGG  360
            | ||||||||| || |||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct  251  AATCGTTTCCA-AATCTTCGCCGAGGTCTATCCAGCAAGCTGCTTCTAATGCCGGAATGG  309

Query  361  CCATTGACGCCGGAATCGTCCACAGTACCAGCG-T---G-------AACT-CTGGATGCG  408
            |||| |||||||| ||||| ||||||| | | | |   |       || | |||| || |
Sbjct  310  CCATCGACGCCGGGATCGTTCACAGTAACGGTGGTTTTGTGTCGGGAAATTCTGGGTGTG  369

Query  409  GAGATACGACGACGTATTACGAGAATGGAGCTGATC-AAGTGGAGCCGTTGAATATTTCA  467
            | ||||||||||||||||  | ||||||||||| |  || ||||||||||||||||||||
Sbjct  370  GTGATACGACGACGTATTGTGTGAATGGAGCTG-TGGAAATGGAGCCGTTGAATATTTCA  428

Query  468  GTGTATGATTATCTGGGCGGCCACGATCACGTTTGAT  504
            |||||||||||||||| ||| ||||||||||||||||
Sbjct  429  GTGTATGATTATCTGGACGGTCACGATCACGTTTGAT  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29812121094


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5