BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22840.1

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921308 jgi|Araly1|921308|scaffold_102589.1                        708    0.0  


> Ahg921308 jgi|Araly1|921308|scaffold_102589.1
Length=442

 Score =  708 bits (383),  Expect = 0.0
 Identities = 419/436 (96%), Gaps = 3/436 (1%)
 Strand=Plus/Plus

Query  23   GCAAGCTCCAGAGAAACGAGAGTTCCGTAATCATTTTCTCTTGTTGTTCCTGATCGCGTA  82
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  3    GCAAGCTCCAAAGAAACGAGAGTTCCGTAATCATTTTCTCTTGTTGTTCCTGATCGCGTT  62

Query  83   GCTCAAGCGaaaaaaaTGGCGTCGTTTGATGAAGCACCACCAGGAAACGCCAAGGCCGGT  142
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  63   GCTCAAGCG-AAAAAATGGCGTCGTTTGATGAAGCACCACCAGGAAACGCCAAAGCCGGT  121

Query  143  GAGAAGATCTTCAGGACCAAGTGTGCTCAGTGTCACACCGTCGAAGCA-GGCGCCGGTCA  201
            ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  122  GAGAAGATCTTCAGGACCAAGTGTGCTCAGTGTCACACCGTCGAA-CAAGGCGCCGGTCA  180

Query  202  CAAACAAGGACCCAATCTAAACGGTCTATTTGGAAGACAATCTGGTACAACTGCTGGTTA  261
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  181  CAAACAAGGACCAAATCTAAACGGTCTCTTTGGAAGACAATCTGGTACAACTGCTGGTTA  240

Query  262  CTCTTACTCTGCTGCTAACAAGAACAAAGCTGTGGAATGGGAAGAGAAGGCCTTGTACGA  321
            ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct  241  CTCTTACTCTGCTGCTAACAAGAACAAAGCTGTCGAATGGGAAGAGAAGACCTTGTATGA  300

Query  322  TTACTTGCTCAACCCCAAGAAGTACATACCAGGTACCAAGATGGTGTTCCCTGGGCTAAA  381
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  301  TTACTTGCTCAACCCCAAGAAGTACATACCAGGTACAAAGATGGTGTTCCCTGGGCTAAA  360

Query  382  GAAGCCGCAAGACCGTGCTGATCTCATCGCCTACTTGAAGGAATCTACTGCGCCTAAGTG  441
            ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  361  GAAGCCGCAAGACCGCGCTGATCTCATTGCCTACTTGAAGGAATCTACTGGGCCTAAGTG  420

Query  442  AATCTGATGGTGGATT  457
            | ||| ||||||||||
Sbjct  421  ATTCTAATGGTGGATT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26876656485


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5