BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22860.1
Length=3255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472531 jgi|Araly1|472531|fgenesh2_kg.1__2485__AT1G22860.1 2409 0.0
> Ahg472531 jgi|Araly1|472531|fgenesh2_kg.1__2485__AT1G22860.1
Length=3065
Score = 2409 bits (1304), Expect = 0.0
Identities = 1461/1538 (95%), Gaps = 6/1538 (0%)
Strand=Plus/Plus
Query 1 ATGTCCAAATCTCGGGCAGTTGTGGAGCTCACCGCTCGTTTCGATCTCGGCGGCGACGAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCCAAATCTCGGGCAGTTGTGGAGCTCACTGCTCGTTTCGATCTCGGCGGCGACGAT 60
Query 61 AAGATCCGAGCTTTATCTCTCTCACCTATCTCCGATTCTCAAACCCTAGTATACCTCGGA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAGATCCGAGCTTTATCTCTCTCACCTATCTCCGATTCCCAAACCCTAGTATACCTCGGA 120
Query 121 ACCTACTCCGGATCTCTGATTCTCCTATCTCTCGACACTTTAACTAATACCGTCTCGCGT 180
|| | ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 121 ACTTCCTCCGGATCTCTGATTCTCCTCTCTCTCGACACTTTAACTAATATCGTCTCCCGT 180
Query 181 CTCGCAAGTGTATCGCTGAGCCCTTCTCCTGTTGAGTCTATCTTTGTACTCGGCGAGGAA 240
|||| ||||||||||||||| |||| |||||||||||||||||||| || || ||||||
Sbjct 181 CTCGGGAGTGTATCGCTGAGCGCTTCCCCTGTTGAGTCTATCTTTGTGCTTGGAGAGGAA 240
Query 241 AGAGGGAGAGTTCTAGCTCTCTGCAATGGTTACTTGTTCTT-ATTGGATTCGCTTCTTTC 299
|||||||||||| |||| ||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 241 AGAGGGAGAGTTTTAGCACTCTGCAATGGCTACTTGTTCTTGA-TGGATTCGCTTCTTTC 299
Query 300 TCAACCAGCTAAGAGATTGGGTGGTTTATTGAAAGGGATCAATGTGATTGCTAA-GAGAG 358
||||||| ||||||||||||||||| |||||||||| ||||||||| |||| || |||||
Sbjct 300 TCAACCAACTAAGAGATTGGGTGGTGTATTGAAAGGAATCAATGTGGTTGC-AAGGAGAG 358
Query 359 TAAGAGGACGTGATTCGTCGAGTACTGACTTGTTGCCTTCTGAGATTTCAACGGATTCTA 418
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TGAGAGGACGTGATTCGTCGAGTACTGACTTGTTGCCTTCTGAGATTTCGACGGATTCTA 418
Query 419 GCTCGAGTAAGAAGTTTCTTCAGTTGCTTGGTGCTGGGAATCTTGTGAGTGATGTTAGAG 478
||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 419 GCTCGAGCAAGAAGTTTCTTCAGTTGCTTGGTGCTGGGAATCTGGTGAATGATGTTAAAG 478
Query 479 GTAATGA-TTCTAGACATGAGAGAGTCCAACAAGGTCACTATGTTTTCGCTGTTGCTATT 537
|||| || || | |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 479 GTAAGGACTT-TCGACATGAGAGAGTCCATCAAGGTCATTATGTTTTCGCTGTTGCTATT 537
Query 538 GGTGAGAGAATGTTGCTGATTGAACTTCAATGTGCTGAAAAAGAAGGATTAAGTGGTTCC 597
||||||||||||||| |||||||||||||||||| |||||| ||||| ||| | |||
Sbjct 538 GGTGAGAGAATGTTGTTGATTGAACTTCAATGTGATGAAAACGAAGGGTTATCTTCTTCT 597
Query 598 TTTGTTGTTTTGAAAGAGATTCTGGGAATTGGTGGGATCAAAACTTTGGTTTGGCTTGAT 657
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 TTTGTTGTTTTGAAAGAGGTTCTGGGGATTGGTGGGATCAAAACTTTGGTTTGGCTTGAT 657
Query 658 GATTATGTTATTGCGGGAACTGTTAAAGGTTATAGTTTGATCTCGTGTGTCACTGGTCTA 717
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 GATTATGTTATTGCGGGTACTGTTAAAGGTTATAGTTTGATCTCGTGCGTCACTGGTCTA 717
Query 718 AGTGGGGTTATTTTCACATTGCCTGATGTTTCTGGACCGCCGCTGCTTAAATTGCTCTGT 777
||||| || ||||| |||||||||||||| ||||| || ||||| || |||||||| |||
Sbjct 718 AGTGGAGTGATTTTTACATTGCCTGATGTGTCTGGCCCCCCGCTACTGAAATTGCTTTGT 777
Query 778 AAAGAGTGGAAAGTGTTGTTGTTGGTGGACAATGTTGGAGTTGTTGTGGACACAAATGGT 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 AAAGAGTGGAAAGTGTTGTTGTTGGTGGATAATGTTGGAGTTGTTGTGGACACAAATGGT 837
Query 838 CAGCCTATTGGAGGGAGCCTTGTGTTTCGGAGGAGGCCTGATTCTGTTGGAGAATTGTCT 897
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 CAGCCTATTGGAGGGAGCCTTGTGTTTCGGAGGAGGCCTGATTCTGTTGGTGAATTGTCT 897
Query 898 TTCTACTTGGTGACTGTTGGAGATGGAAAAATGGAAATACATCAGAAGAAGTCTGGTGCT 957
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTCTATTTGGTGACTGTCGGAGATGGAAAAATGGAAATACATCAGAAGAAGTCTGGTGCT 957
Query 958 TGTGTTCAATCAGTTAGTTTTGGTCCTCAAGGATGTGGGCCTTCACTTTTGGCCGCAGAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTGTTCAATCAGTTAGTTTTGGTCCTCAAGGATGTGGGCCTTCACTTTTGGCCGCAGAT 1017
Query 1018 GAGGCAGGAGACGGAAACCTTTTGGTTGTCACTACCTTGTCAAAGCTTATTTTTTATCGG 1077
||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1018 GAGGCTGGAGACGGAAACCTTTTGGCTGTCACTTCCTTGTCAAAGCTTATTTTTTATCGG 1077
Query 1078 AGAGTGCCTTATGAAGAACAGATTAAAGACCTCTTGAGGAAAAAGAGATATAGAGAAACC 1137
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 1078 AGAGTGCCTTACGAAGAACAGATTAAAGATCTCTTGAGGAAAAAGAGATACAGAGAAGCC 1137
Query 1138 ATCTCCTTGGTGGAGGAACTTGACTCACAGGGGGAAATTTCGAAAGACATGCTTTCGTTT 1197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 ATCTCCTTGGTGGAGGAACTTGACTCACAGGGGGAAATTTCGAAAGATATGCTTTCGTTT 1197
Query 1198 CTTCATGCTCAAATAGGGTATCTACTGCTTTTTGATTTGCGCTTTGAGGAAGCTGTGAAT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTTCATGCTCAAATAGGGTATCTACTGCTTTTTGATTTGCGCTTTGAGGAAGCTGTGAAT 1257
Query 1258 CAATTTTTGAAGTCAGAAAAAATGGAACCTTCTGAAGTTTTTCCTTTTATCATGCGGGAT 1317
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAATTTTTGAAGTCAGAAGAAATGGAACCTTCTGAAGTTTTTCCTTTTATCATGCGGGAT 1317
Query 1318 CCTAATCGCTGGTCTTTGGTGGTTCCAAGAAACAGATACTGGGGACTGCATCCTCCCCCA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CCTAATCGCTGGTCTTTGGTGGTTCCAAGAAACAGATACTGGGGACTGCATCCTCCCCCT 1377
Query 1378 GCTCCTTTCGAAGATGTTGTAGATAATGGGCTGATGGCCATCCAGAGAGCCAATTTTCTT 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCTCCTTTCGAAGATGTTGTAGATAATGGGCTGATGGCCATCCAGAGAGCCAATTTTCTA 1437
Query 1438 AGAAAAGCAGGAATGGACACTCCGGTTGACGAAGAGTTTTTCTCAGATCCCCCTAGTAGA 1497
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 AGAAAAGCAGGAATGGACACTCCGGTTGACGAAGAGTTTTTCTCAAATCCCCCTAGTAGA 1497
Query 1498 GCTGATTTACTGGATTCAGCAATTAAAAACATAACCAG 1535
||||||||| |||||||||||||||||||||| |||||
Sbjct 1498 GCTGATTTATTGGATTCAGCAATTAAAAACATTACCAG 1535
Score = 2202 bits (1192), Expect = 0.0
Identities = 1446/1559 (93%), Gaps = 56/1559 (4%)
Strand=Plus/Plus
Query 1611 TTA-CAGAGCATTAAACCGTGTTGAAGATATGGAGAATCTTGCATCTTCCGGTAATAAC- 1668
||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1529 TTACCAGAGCGTTAAACCGTGTTGAAGATATGGAGAATCTTGCATCTTCCGATAATAACT 1588
Query 1669 -TG-TGTTGTGGAGGAGTTGGAGACTCTTCTAACTGAATCTGGACACTTACGGACACTTG 1726
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 GTGTTGTTGTGGAGGAGTTGGAGACTCTTCTAACTGAATCTGGACACTTACGGACACTTG 1648
Query 1727 CATTCCTCTATGCAACTAAGGGGATGGGTGCGAAGGCTCTTGCTATTTGGCGTCTCTTTA 1786
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1649 CATTCCTCTATGCAAGTAAGGGGATGAGTGCAAAGGCTCTTGCTATTTGGCGTCTCTTTA 1708
Query 1787 CGAAGAATTATTCATCTGGTCTATGGCAAGACTCAGATGACTTGGTACCCTATTTACACG 1846
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1709 CGAAGAATTATTCATCTGGTCTATGGCAAGACTCAGATGATTTGGTGCCCTATTTACACG 1768
Query 1847 ATAACGAGCTCATTAGGTTATCTGGTAAAGAGGCTGCTGCCGCAGAAGCAGCCAGAATTC 1906
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 ACAACGAGCTCATTAGGTTATCTGGTAAAGAGGCTGCTGCCGCAGAAGCAGCCAGAATTC 1828
Query 1907 TTGAGGAACCCTGTGATCCAGAACTGGCATTGCAGCATCTTAGTTGGATTGCAGATG-TA 1965
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1829 TTGAGGAACCCTGTGATTCAGAACTGGCATTGCAGCATCTTAGTTGGATTTCAGA-GATA 1887
Query 1966 AACCCATTGTTTGCTATCCAAGTCTTGACGTCAGATAAAAGGACAGAAGAGCTTTCGCCA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 AACCCATTGTTTGCTATCCAAGTCTTGACGTCAGATAAAAGGACAGAAGAGCTTTCGCCA 1947
Query 2026 GAGCAAGTGATCCAAGCTATTGATCCCAAAAAGGTTGAAATCATACAGAGGTACTTCCAA 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 GAGCAAGTGATCCAAGCTATTGATCCCAAAAAGGTTGAAATCATACAGAGGTACTTCCAA 2007
Query 2086 TGGTTGATTGAGGAAAGAGACTACACTGACCCGCAGCTGCATACATCGTATGCTCTCTCA 2145
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2008 TGGTTGATTGAGGAAAGAGACTACTCTGACCCGCAGCTGCATACATCGTATGCTCTCTCA 2067
Query 2146 CTTGCCAGATCAGCACTTGAGTGTGTTGAAGTTCAAAATGGTATCCAAGAAGCTGATGTT 2205
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 2068 CTTGCCAGATCAGCACTTGAGTGTGTTGAAGTTCAAAATGGTATCCTAGAAACTGATGCT 2127
Query 2206 CCAAATGGTAGTGAGGCACATGATAGCAATGTTGGAAGTATTTCTTTGTTTGAA-GTTGA 2264
| || || || ||||||||| | ||||||||||||||||||||||||||| || ||
Sbjct 2128 GGA---GGCAGAGAAGCACATGATTGTAATGTTGGAAGTATTTCTTTGTTTGAAAGT-GA 2183
Query 2265 CGTACGAGAAAGATTGCAGGCCTTTTTGCAGTCTTCAGATCTATATGATCCTGAAGAAAT 2324
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 TGTACGAGAAAGATTGCAGACCTTTTTGCAGTCTTCAGATCTATATGATCCTGAAGAAAT 2243
Query 2325 CTTGGAATTGGTAGAAGGATCAGAACTGTGGTTGGAAAAGGCAATCCTATACCGAAGGAT 2384
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 CTTGGTATTGATAGAAGGATCAGAACTGTGGTTGGAAAAGGCAATCCTATACCGAAGGAT 2303
Query 2385 TGGGA-AGGAGACATTGGTCCTCCAAATTCTTGCTCTGTTGCTTGATATGTACCTGGATC 2443
|| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2304 AGG-ACAGGAGACATTGGTCCTCCAAATTCTTGCTCTGTTACTTGATATGTACCTGGATC 2362
Query 2444 CTCAAAATGGTAAAGAACCTATGTTCAAGGCTGCTGTTCGTCTGCTCCACAACCACGGGG 2503
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2363 CTCAAAATGGTAAAGAGCCTATGTTCAAGGCTGCTGTTCGTCTTCTCCACAACCACGGGG 2422
Query 2504 AATCCCTTGATCCTTTGCAAGTATTGGA---C---A--A-----A-TT-G-------T-- 2539
||||||||||||||||||||| ||||| | | | | || | |
Sbjct 2423 CATCCCTTGATCCTTTGCAAGTTTTGGAAAGCTGTATCATGTCTAATTTGCAGAAACTGT 2482
Query 2540 CTCCTGATATGCCCTTAAAACTGGCATCAGATACAATTTTGAGAATGCTGAGGGCTCGGG 2599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 CTCCTGATATGCCCTTAAAACTGGCATCAGATACAATTTTGAGAATGCTGAGGGCTCGGG 2542
Query 2600 TTCATCATCATCGTCAAGGCCAGATCGTACACAATATCTCTCGTGCATTGGATGTAGACT 2659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2543 TTCATCATCATCGTCAAGGCCAAATCGTACACAATATCTCTCGTGCATTGGATGTAGACT 2602
Query 2660 CGAGGTTAGCAAGATTAGAAGAAAGATCACGTCACATGCAGATAAATGATGAGAGCCTCT 2719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2603 CGAGGTTAGCAAGATTAGAAGAAAGATCACGTCACATGCAGATAAATGATGAGAGCCTCT 2662
Query 2720 GTGATTCCTGCTATGCCCGTCT-GGGAACTAAATTATTTGCTATGTACCCCGACGATACC 2778
||||||||||||||||||| || ||||||||| |||||||||||||||| || ||||||
Sbjct 2663 GTGATTCCTGCTATGCCCG-CTTGGGAACTAAGCTATTTGCTATGTACCCTGATGATACC 2721
Query 2779 ATTGTCTGTTACAAGTGTTACCGACGCCTGGGTGAATCAAAGTCAGTAACAGGCCGCGAC 2838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2722 ATTGTCTGTTACAAGTGTTACCGACGCCTGGGTGAATCAAAGTCAGTAACAGGCCGTGAC 2781
Query 2839 TTCAAACGAGATGTTCTGATAAAACCCGGTTGGTTAGTTAACCGGTAGCAGAAGAAGCCC 2898
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2782 TTCAAACGAGATGTTCTGATAAAACCCGGTTGGTTAGTGAACCGGTAGCAGAAGAAGCCC 2841
Query 2899 ATCTTGTTCCGCATCAATTGGCtttttttCACTTGACCTCTAACCCTCACAAACACAGAG 2958
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 2842 CTCTTGTTCCGCAACAATTGGCTTTTT--CACTTGACCTCTAACCCTCAAAAACATAGAG 2899
Query 2959 TTGGTACAGTACATACAGCAGCTCACGCAGTT-TCCCTTGCTACAAATAATGAAGAACAT 3017
|||||| |||||| | ||||||||||| |||| ||| |||||||||||||||| |||| |
Sbjct 2900 TTGGTATAGTACAGAAAGCAGCTCACGTAGTTCTCC-TTGCTACAAATAATGAGGAACTT 2958
Query 3018 AAGGATCTCCGTTCGATCGCCATAGCTTCATCAAGCTCGTCTCTAGACTTGTGTAGAGAG 3077
||| |||| |||||||| ||||||||||| |||||||||||||||| |||||| |||||
Sbjct 2959 AAGAATCTGCGTTCGATGGCCATAGCTTCTTCAAGCTCGTCTCTAGGCTTGTG--GAGAG 3016
Query 3078 ATTCGAATCGGCAACATTTCAAAAGTTCTT-CATCTTACTGTAAATGGTGGAAGGCATC 3135
|| | ||| |||| || |||||| ||| ||||||||||||||||| ||||||
Sbjct 3017 AT---ATTCG--AACA----AAG-GTTCTTTCATGTTACTGTAAATGGTGGAGGGCATC 3065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122849845644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5