BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22870.1
Length=2742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472532 jgi|Araly1|472532|fgenesh2_kg.1__2486__AT1G22870.1 4451 0.0
Ahg926502 jgi|Araly1|926502|scaffold_202063.1 2268 0.0
> Ahg472532 jgi|Araly1|472532|fgenesh2_kg.1__2486__AT1G22870.1
Length=2739
Score = 4451 bits (2410), Expect = 0.0
Identities = 2633/2743 (96%), Gaps = 5/2743 (0%)
Strand=Plus/Plus
Query 1 ATGTCGATTAATATGAGAACGCTAACGCAAGCACTAGCCAAAACGGCTGCAGTGATTGAG 60
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGATTAATATGAGAACGCTGACGCAAGCACTAGCCAAAACGGCTGCGGTGATTGAG 60
Query 61 AAGACGGTTCAAACCACAGTCCAGGAGGTTACAGGTCCCAAACCTCTACAAGACTACGAG 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AAGACGGTTCAAACCACAGTCCAGGAGGTTACAGGTCCCAAACCTCTTCAAGACTACGAC 120
Query 121 CTTCTCGATCAGATCGGTTCCGGTGGTCCTGGTCTCGCTTGGAAGCTTTACTCCGCCAAG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CTTCTCGATCAGATCGGTTCCGGTGGTCCTGGTCTCGCCTGGAAGCTTTACTCCGCCAAG 180
Query 181 GCACGTGACTCCACGCGGCCTCAGCAGTATCCAACAGTTTGCGTCTGGGTGCTTGATAAG 240
|||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 181 GCACGTGACTCCACACGACCTCACCAGTATCCAACCGTCTGCGTCTGGGTGCTTGATAAG 240
Query 241 CGCGCTTTATCTGAGGCTCGTGCTAGGGCGGGATTATCTAAAGCTGCTGAAGATGCGTTT 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCGCTTTATCTGAGGCTCGTGGTAGGGCGGGATTATCTAAAGCTGCTGAAGATGCGTTT 300
Query 301 CTCGATTTGATTCGTGCTGATTCGGGGAAGCTTGTGCGGTTGAGACATCCCGGTGTGGTT 360
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 301 CTCGATTTGATTCGTGCTGATGCGGGAAAGCTTGTGCGGTTGAGACATCCCGGTGTGGTT 360
Query 361 CATGTTGTTCAGGCGCTTGATGAGAATAAGAATGCTATGGCTATGGTTACGGAGCCGCTC 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATGTGGTTCAGGCGCTTGATGAGAATAAGAATGCTATGGCTATGGTTACGGAGCCGCTC 420
Query 421 TTCGCATCCGTGGCTAATGCGCTTGGGAATGTGGAAAATGTTGATAACGTTCCCAAAGAT 480
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 TTCGCATCCGTGGCTAACGCGCTTGGGAATGTGGAAAATGTGGATAACGTTCCGAAAGAT 480
Query 481 CTTAAGTCCATGGAGATGAGCTTGTTGGAGGTGAAGCATGGTCTTCTCCAAATTGCAGAG 540
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTAAGGCTATGGAGATGAGCTTGTTGGAGGTGAAGCATGGTCTTCTCCAAATTGCAGAG 540
Query 541 ACATTGAACTTTCTTCATAATAACGCCCATCTTATTCATCGTGCTGTATCTCCGGAGAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 ACATTGAACTTTCTTCATAATAACGCCCATCTTATTCATCGTGCTGTATCTCCAGAGAAT 600
Query 601 GTTTTTATTACTTCGGCTGGTTCCTGGAAGCTTGCCGGATTTGGCTTTGCTATTTCACAA 660
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 601 GTTTATATTACTTCGGCTGGTTCTTGGAAGCTTGCCGGATTTGGCTTTGCTATTTCAGAA 660
Query 661 GCACAGGATGGGAATTTGGATAACTTGCAATCATTCCACTACTCTGAATATGATGTTGAG 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCACAGAATGGGAATTTGGATAACTTGCAATCATTCCACTACTCTGAATATGATGTTGAG 720
Query 721 GACTCAATCCTGCCACTCCAACCATCTTTAAATTATACTGCACCTGAATTGGTGCGGAGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACTCAATCCTGCCACTCCAACCATCTTTAAATTATACTGCACCTGAATTGGTGCGGAGC 780
Query 781 AAAACTTCTTCGGCTGGAGTTTCTTCAGATATTTTTAGTTTCGGATGCCTCACTTATCAT 840
||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 781 AAAACTTCTTCGGCTGGAGTTTCTTCAGACATTTTTAGTTTCGGATGCCTCGCCTATCAT 840
Query 841 TTAGTGGCACGGAAACCATTGTTTGATTGTCATAACAATGTCAAGATGTACATGAACACA 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 TTAGTGGCACGGAAACCATTGTTTGATTGCCATAACAATGTCAAGATGTACATGAACACA 900
Query 901 TTGAACTATTTAACAAATGAAACTTTCTCATCTATACCCTCGGACTTGGTATCTGATTTA 960
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTGAACTATCTAACAAATGAAACTTTCTCATCTATACCCTCGGACTTGGTATCTGATTTA 960
Query 961 CAACGGATGCTATCAATGAACGAGTCATATAGACCAACAGCTTTAGATTTCACAGGATCT 1020
|||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 961 CAACGGATGCTATCAATGAACGAGTCATTTAGACCAACTGCATTAGATTTCACAGGATCT 1020
Query 1021 AGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTGAG 1080
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1021 AATTTTTTCCGAAGCGACACTAGGTTGCGTGCTCTCCGTTTCCTTGATCATATGCTTGAA 1080
Query 1081 AGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGACTTT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 AGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTT 1140
Query 1141 GATTCTCGTGTATTACGGTATAAGGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTG 1200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATTCTCGGGTATTACGGTATAAGGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTG 1200
Query 1201 GTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAGGATAAAAAT 1260
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 GGTATGCAACCAATGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAGGATAAGAAT 1260
Query 1261 GACTTTGAGTTGACAACGCTCCCAGCCCTTGTTCCTG-TCTTAAGTACTGCTACGGGTGA 1319
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 1261 GACTTTGAGTTGACAACGCTCCCAGCCCTTGTTCCTGTTC-TGAGTACTGCTACGGGTGA 1319
Query 1320 TACATTACTGTTGCTTATAAAGCGTGCAGAGCTAATTATTAACAAGACTAATGCAGAGCA 1379
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1320 TACATTACTGTTGCTTATAAAGCGGGCAGAGCTTATTATTAACAAGACTAATGCAGAGCA 1379
Query 1380 TCTTGTATCACATGTCCTCCCTTTGCTTCTCCGAGCCTACAATGATAATGATGTCCGGAT 1439
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1380 TCTTGTATCACATGTCCTCCCTTTGCTTCTCCGAGCCTACAACGATAACGATGTTCGGAT 1439
Query 1440 ACAGGAGGAAGTTCTGAAAAGATCTACATCTGTTGCTAAACAACTCGATGGTCAGGTTGT 1499
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 ACAGGAGGAAGTTCTGAAAAGATCTACATCTGTTGCTAAGCAACTCGATGGTCAGGTTGT 1499
Query 1500 AAGGCAAGCAATTTTGCCTCGTGTTCATGGCTTGGCTCTCAAAACCACAGTTGCTGCCGT 1559
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAGGCAAGCAATTTTGCCTCGCGTTCATGGCTTGGCTCTCAAAACCACAGTTGCTGCCGT 1559
Query 1560 CAGAGTAAATGCTTTGCTTTGCTTAGCAGAGCTGGTTCAAACACTTGATAAACTCGCTGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CAGAGTAAATGCTTTGCTTTGCTTAGCAGAGCTGGTTCAAACACTTGATAAACTCGCTGT 1619
Query 1620 TACTGAAATTCTGCAAACAATTCAACGCTGTACTGCTGTTGATCGTTCTGCACCGACCCT 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1620 TACTGAAATTCTGCAAACAATTCAACGCTGTACTGCTGTTGATCGTTCTGCACCAACCCT 1679
Query 1680 TATGTGTACTCTTGCAATCGCAAACGCAATTCTCAAGCAGTATGGAGTTGAATTCACTTC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TATGTGTACTCTTGCAATCGCAAACGCAATTCTCAAGCAGTATGGAGTTGAATTCACTTC 1739
Query 1740 AGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACA 1799
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1740 AGAACACGTGCTTCCCCTGATTATACCGCTTCTCACTGCCCAACAATTGAATGTCCAACA 1799
Query 1800 GTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGGAAAATAGAGGAAAAAAGAGG 1859
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1800 GTTTGCCAAATATATTCTATTTGTCAAGGATATTCTCAGGAAAATAGAGGAAAAAAGAGG 1859
Query 1860 AGTTACCGTAAATGATTCTGGAGTCCCAGAAGTAAAACCAGGCTGTGTGGCGGATGGGCT 1919
|||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1860 AGTTACAGTAAATGATTCTGGAGTCCCAGAAGTAAAACCAGGCTCTGTTGCGGATGGGCT 1919
Query 1920 TCAGTTTCAAACACCAACCaaaaaaaCTGAAAAGGTTGCTTCTGCAGCAAAGAACAGTCC 1979
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TCAGTTTCAAACATCAACCCAAAAAACTGAAAAGGTTGCTTCTGCAGCAAAGAACAGTCC 1979
Query 1980 AGCATGGGATGAAGATTGGGCCCTCCCGACCAAAATTTCTGCTCCAAGAGATCCTGGACC 2039
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||
Sbjct 1980 TGCATGGGATGAAGATTGGGCCCTTCCGACCAAGATTTCTGCTCCTAGAGATCCTGAACC 2039
Query 2040 CGCAAACTCTCCTCAGTTTAACAATTCTACAGTTCAGTCACAGTCATCGAACCGGACATC 2099
| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2040 CACAAACTCTC---AGTTTAACAGTTCTACAGTTCAGTCACAGTCATCGAACCGGACATC 2096
Query 2100 AGTACCAACAACATGCCCTGCAGTTGACCTAGAGTGGCCTCCAAGACAATCTTTCAATGC 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2097 AGTACCAACAACATGCCCTGCAGTTGACCTAGAGTGGCCTCCAAGACAATCTTCCAGTGC 2156
Query 2160 CACTGCTCAGCCAGCTAATGATGAGACTCGGATAAACGCAGCAGGAACACCAACAACTCC 2219
||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||
Sbjct 2157 CACTGCTCAGCCAGCTAATGATGAGACACGGATAAACGAAGCAGGAACATCATCAACTCC 2216
Query 2220 GAGTTTTGATGAACTAGACCCTTTTGCTAACTGGCCACCACGGCCCAACAGTGCTTCCAC 2279
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2217 AAGTTTTGATGAACTAGACCCTTTTGCTAACTGGCCACCACGGCCCAACGGTGCTCCCAC 2276
Query 2280 TGCCTCTGGCGGTTTCCATAACAGTACTACCACTCAACCTCCAATCAACAACAGCGGTTC 2339
|||||||||||||||||| |||| ||||||||||||||||||| | |||||||| |||||
Sbjct 2277 TGCCTCTGGCGGTTTCCACAACAATACTACCACTCAACCTCCACTTAACAACAGTGGTTC 2336
Query 2340 TGGTTTGAGAAACAATTTAACAGACGGTAGGCAGTTTCAGACAACTAACAACGACTTCTG 2399
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2337 TGGTTTGAGTAACAATTTAACAGTCGGTAGGCAGTTTCAGACAGCTAACAACGACTTCTG 2396
Query 2400 GGCCTTTGGTAATGCCTCCCTCTCTTCTATGAAATCACAGCAAGAGACTTCGGGTATCAG 2459
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 GGCCTTCGGCAATGCCTCCCTCTCTTCTATGAAATCACAGCAAGAGACTTCGGGTATCAG 2456
Query 2460 GGCAAGTAACGCAGATCCTTTGACCTCTTTTGGGATTCAGAATCAGAACCAAGGAATGCC 2519
||||||||| || ||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 2457 CGCAAGTAACCCACATCCTATGAACTCTTTCGGGATTCAGAATCAGAACCAAGGAATGCC 2516
Query 2520 GTCTTTTGGAAGCAGTTCATATGGTAACCAGAAGCCGCAAGCAGACATCAGCTCCATATT 2579
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2517 GTCTTTTGGAAGCAGTTCATATGGTAACCAGAAGCCGCCAGCAGACATCAGTTCCATATT 2576
Query 2580 CAGTTCAAGCAGAACAGAGCAATCTGCGATGAAACTCGCACCACCGCCTTCAATAGCTGT 2639
|| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 CAATTCAAGCAAAACCGAGCAATCTGCGATGAAACTCGCACCACCGCCTTCAATAGCTGT 2636
Query 2640 GGGAAGAGGAAGGGGAAGGGGTAGAAGTGGGACATCTATCTCTAAGCCAAATGGTTCAAA 2699
||||||||||| |||||||||||||||||||||||||| ||| || ||| |||||||||
Sbjct 2637 GGGAAGAGGAAAGGGAAGGGGTAGAAGTGGGACATCTACCTCAAATACAAGTGGTTCAAA 2696
Query 2700 GCAGCAACAAACCGAACAGCCATCTTTGTTAGATCTATTGTGA 2742
||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 2697 GCAGCAACAAACCGAGCAGCCATCGCTGTTAGATCTTTTGTGA 2739
> Ahg926502 jgi|Araly1|926502|scaffold_202063.1
Length=2740
Score = 2268 bits (1228), Expect = 0.0
Identities = 1962/2313 (85%), Gaps = 64/2313 (3%)
Strand=Plus/Plus
Query 1 ATGTCGATTAATATGAGAACGCTAACGCAAGCACTAGCCAAAACGGCTGCAGTGATTGAG 60
|||||||| ||||||| |||| | || ||||| ||||| | ||| || || |||||||||
Sbjct 21 ATGTCGATAAATATGAAAACGTTTACTCAAGCTCTAGCTAGAACCGCAGCTGTGATTGAG 80
Query 61 AAGACGGTTCAAACCACAGTCCAGGAGGTTACAGGTCCCAAACCTCTACAAGACTACGAG 120
||||||||||| |||||||| ||||| ||||| || || ||| |||| || || ||||||
Sbjct 81 AAGACGGTTCATACCACAGTTCAGGAAGTTACGGGACCTAAAGCTCTTCAGGATTACGAG 140
Query 121 CTTCTCGATCAGATCGGTTCCGGTGGTCCTGGTCTCGCTTGGAAGCTTTACTCCGCCAAG 180
|| ||||||||||||||||||| |||||||||||| ||||||||||| ||| | || |||
Sbjct 141 CTACTCGATCAGATCGGTTCCGCTGGTCCTGGTCTAGCTTGGAAGCTATACGCAGCTAAG 200
Query 181 GCACGTGACTCCACGCGGCCTCAGCAGTATCCAACAGTTTGCGTCTGGGTGCTTGATAAG 240
|| ||||||||||||||||| |||||||| || || || || |||||| |||||||||||
Sbjct 201 GCGCGTGACTCCACGCGGCCACAGCAGTACCCGACGGTCTGTGTCTGGATGCTTGATAAG 260
Query 241 CGCGCTTTATCTGAGGCTCGTGCTA-GGGCGGGATTATCTAAAGCTGCTGAAGATGCGTT 299
|| ||||| ||||||||||||| || | ||||| || ||||| || ||||||||||||||
Sbjct 261 CGTGCTTTGTCTGAGGCTCGTG-TACGAGCGGGGTTGTCTAAGGCAGCTGAAGATGCGTT 319
Query 300 TCTCGATTTGATTCGTGCTGATTCGGGGAAGCTTGTGCGGTTGAGACATCCCGGTGTGGT 359
||| ||| ||||||| |||||| | |||||||||||| ||||||||||||| ||||||||
Sbjct 320 TCTTGATCTGATTCGAGCTGATGCAGGGAAGCTTGTGAGGTTGAGACATCCTGGTGTGGT 379
Query 360 TCATGTTGTTCAGGCGCTTGATGAGAATAAGAATGCTATGGCTATGGTTACGGAGCCGCT 419
|||||| || || || ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 380 TCATGTGGTGCAAGCACTTGATGAGAATAAGAATGCTATGGCTTTAGTTACGGAGCCGCT 439
Query 420 CTTCGCATCCGTGGCTAATGCGCTTGGGAATGTGGAAAATGTTGATAACGTTCCCAAAGA 479
|| || || ||||||||||||||||||||||| || ||||| | ||| || || |||||
Sbjct 440 TTTTGCTTCTGTGGCTAATGCGCTTGGGAATGTAGAGAATGTGGCTAATGTGCCAAAAGA 499
Query 480 TCTTAAGTCCATGGAGATGAGCTTGTTGGAGGTGAAGCATGGTCTTCTCCAAATTGCAGA 539
||| || || ||||||||||||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 500 TCTGAAATCAATGGAGATGAGCTTGTTGGAGGTGAAGCATGGTCTGCTCCAGATTTCTGA 559
Query 540 GACATTGAACTTTCTTCATAATAACGCCCATCTTATTCATCGTGCTGTATCTCCGGAGAA 599
|||| |||||||||| || |||||||| |||| || ||||| ||| ||||||| |||||
Sbjct 560 GACACTGAACTTTCTACACAATAACGCAAATCTCATCCATCGAGCTATATCTCCAGAGAA 619
Query 600 CGTTTTTATTACTTCGGCTGGTTCCTGGAAGCTTGCCGGATTTGGCTTTGCTATTTC-AC 658
||| |||||||||| |||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 620 TGTTCTTATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGGTTTGCTATTTCGAC 679
Query 659 AAGCACAGGATGGGAATTTGGATAACTTGCAATCATTCCACTACTCTGAATATGATGTTG 718
|||||||| |||||||||||||||| ||||| |||||||||| ||||||||||| || |
Sbjct 680 -AGCACAGGCTGGGAATTTGGATAACATGCAAGCATTCCACTATTCTGAATATGACGTCG 738
Query 719 AGGACTCAATCCTGCCACTCCAACCATCTTTAAATTATACTGCACCTGAATTGGTGCGGA 778
|||| || || |||||| |||| ||||| |||||||| |||||||| ||| || ||||||
Sbjct 739 AGGATTCGATACTGCCAGTCCAGCCATCCTTAAATTACACTGCACCGGAACTGATGCGGA 798
Query 779 GCAAAACTTCTTCGGCTGGAGTTTCTTCAGATATTTTTAGTTTCGGATGCCTCACTTATC 838
| |||| | |||| ||||||| ||| || || ||||||||||| |||||||| | ||||
Sbjct 799 GTAAAAGTCCTTCAGCTGGAGCTTCGTCGGACATTTTTAGTTTTGGATGCCTTGCCTATC 858
Query 839 ATTTAGTGGCACGGAAACCATTGTTTGATTGTC-ATAACAATGTCAAGATGTACATGAAC 897
|| |||| || |||||||| ||||| || || | |||| |||||||||||||||||||||
Sbjct 859 ATCTAGTTGCTCGGAAACCGTTGTTAGACTG-CAATAATAATGTCAAGATGTACATGAAC 917
Query 898 ACATTGAACTATTTAACAAATGAAACTTTCTCATCTATACCCTCGGACTTGGTATCTGAT 957
|| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 918 ACGTTGAACTATATAACAAATGAATCTTTCTCATCTATACCCTCGGACTTGGTATCTGAT 977
Query 958 TTACAACGGATGCTATCAATGAACGAGTCATATAGACCAACAGCTTTAGATTTCACAGGA 1017
|| ||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 978 TTGCAAAGGATGCTATCAATGAACGAGTCCTTTAGACCAACAGCATTAGATTTCACAGGA 1037
Query 1018 TCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTT 1077
|| | |||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1038 TCAAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATATGCTT 1097
Query 1078 GAGAGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGAC 1137
|| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1098 GAAAGAGATAATATGCAGAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGAT 1157
Query 1138 TTTGATTCTCGTGTATTACGGTATAAGGTGCTTCCTCCTCTTTGTGCTGAACTTAGGAAT 1197
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1158 TTTGATTCCCGTGTATTACGGTATAAGGTGCTTCCACCTCTTTGTGCGGAACTTAGGAAT 1217
Query 1198 TTGGTTATGCAACCAGTGATTCTT-CCCATGGTTCTAACTATAGCAGAGTCTCAGGATAA 1256
|| ||| |||||||| ||| |||| || |||||||||||||||||| |||| |||||||
Sbjct 1218 TTAGTTTTGCAACCAATGA-TCTTGCCAATGGTTCTAACTATAGCACAGTCCCAGGATAG 1276
Query 1257 AAATGACTTTGAGTTGACAACGCTCCCAGCCCTTGTTCCTG-TCTTAAGTACTGCTACGG 1315
|| ||| ||||| ||| ||| || || || |||||||||| || | ||||||||| | |
Sbjct 1277 AACTGATTTTGAACTGATAACACTTCCGGCTCTTGTTCCTGTTC-TGAGTACTGCTTCAG 1335
Query 1316 GTGATACATTACTGTTGCTTATAAAGCGTGCAGAGCTAATTATTAACAAGACTAAT-GCA 1374
| |||||||||||| ||||| |||||| ||| ||||| |||| |||||||||| || |
Sbjct 1336 GAGATACATTACTGCTGCTTGTAAAGCATGCCGAGCTTATTACTAACAAGACTGATAG-T 1394
Query 1375 GAGCATCTTGTATCACATGTCCTCCCTTTGCTTCTCCGAGCCTACAATGATAATGATGTC 1434
|||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1395 GAGCATCTTGTATCGCACGTCCTCCCTTTGCTTCTGCGGGCCTACAATGATAACGATGTC 1454
Query 1435 CGGATACAGGAGGAAGTTCTGAAAAGATCTACATCTGTTGCTAAACAACTCGATGGTCAG 1494
|| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 1455 CGCATTCAGGAGGAAGTTCTCAAAAGATCCACATCTGTTGCTAAGCAACTCGATGGTCAG 1514
Query 1495 GTTGTAAGGCAAGCAATTTTGCCTCGTGTTCATGGCTTGGCTCTCAAAACCACAGTTGCT 1554
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GTTGTCAGGCAAGCAATTTTGCCTCGTGTTCATGGCTTGGCTCTCAAAACCACAGTTGCT 1574
Query 1555 GCCGTCAGAGTAAATGCTTTGCTTTGCTTAGCAGAGCTGGTTCAAACACTTGATAAAC-T 1613
|| |||||||||||||||||||| |||||||||||| |||| ||||| |||||||| | |
Sbjct 1575 GCGGTCAGAGTAAATGCTTTGCTCTGCTTAGCAGAGTTGGTGCAAACGCTTGATAAGCCT 1634
Query 1614 CGCTGTTA-CTGAAATTCTGCAAACAATTCAACGCTGTACTGCTGTTGATCGTTCTGCAC 1672
|||| || | ||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1635 -GCTGCTATC-GAAATTCTGCAAACAATTCAACGGTGTACTGCCGTAGATCGTTCTGCAC 1692
Query 1673 CGACCCTTATGTGTACTCTTGCAATCGCAAACGCAATTCTCAAGCAGTATGGAGTTGAAT 1732
| ||||| |||||||| ||||| | |||||||| || ||||| ||||||||||||||||
Sbjct 1693 CCACCCTAATGTGTACCCTTGCTGTGGCAAACGCGATCCTCAAACAGTATGGAGTTGAAT 1752
Query 1733 TCACTTCAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATG 1792
|||| ||||||| || ||| ||||||| || || || ||||||||||||||| |||| |
Sbjct 1753 TCACAGCAGAACATGTTCTTACCCTGATGATGCCGCTGCTCACTGCCCAACAACTGAACG 1812
Query 1793 TCCAACAGTTTGCCAAATATAT-TCTATTTGTCAAAGATATTCTCAGGAAAATAGAGGAA 1851
|||| ||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 1813 TCCAGCAGTTTGCCAAATATATGT-TATTTGTCAAGGATATTCTCAGGAAAATAGAGGAA 1871
Query 1852 AAAAGAGGAGTTACCGTAAATGATTCTGGAGTCCCAGAAGTAAAACC--AGGCTGTGTGG 1909
|||||||||||||| || || ||||| ||||||||||| || ||||| | |||| ||
Sbjct 1872 AAAAGAGGAGTTACAGTGAACGATTCCGGAGTCCCAGACGTGAAACCGCATTCTGT-TGC 1930
Query 1910 CGGATGGGCTTCAGTTTCAAACACCAACCaaaaaaaCTGAAAAGGTTGCTTCTGCAGCAA 1969
| |||| || ||||||||| || | ||| ||| | |||| ||||||||||||||||| |
Sbjct 1931 CA-ATGGACTCCAGTTTCAATCATCGACCCAAACACCTGAGAAGGTTGCTTCTGCAGCCA 1989
Query 1970 AGAACAGTCCAGCATGGGATGAAGATTGGGCCCTCCC-GACCAAA-ATTTCTGCTCCAAG 2027
||| |||||| ||||||||||||||||||| |||| || |||| ||| ||||| |
Sbjct 1990 AGAGCAGTCCTGCATGGGATGAAGATTGGGGT-TCCCCGAGCAAAGATT-CTGCTGTGGG 2047
Query 2028 AGATCCTGGA-C--C-CG-CA-AACTCTC-C--TCAGTTTAACAATTCTACAGTTCAGTC 2078
| |||||| | | | || ||| | | | ||| |||||||| || |||| ||||||
Sbjct 2048 AAATCCTGCTTCTTCTCATCATAACACACACCATCAATTTAACAAATCCACAGATCAGTC 2107
Query 2079 ACAGTCATCGA--A---C--C---G--------GACATCAGTACCAACAACATGCCCTGC 2120
|||| |||||| | | | | |||| ||| ||||| |||||||||||
Sbjct 2108 ACAGCCATCGATCATGTCTACTCTGCCCAACAAGACAACAGCGCCAACCACATGCCCTGC 2167
Query 2121 AGTTGACCTAGAGTGGCCTCCAAGACAATCTTTCAATGCC--ACTGCTC-AGCCAGCTAA 2177
||| ||| | |||||||||||||| ||||| | ||| ||| ||||||| ||| | || |
Sbjct 2168 AGTGGACATCGAGTGGCCTCCAAGGCAATCCT-CAA-GCCTCACTGCTCCAGCAA-CTGA 2224
Query 2178 TGATGAGACTCGGA-TAAACGCAGCAGGAACACCAACAACTCCGAGTTTTGATGAACTAG 2236
| || |||| | | ||||| | | |||||| || |||||| |||| |||||| |||
Sbjct 2225 TAATCAGACACA-ACTAAACAC-G--GGAACATCATTTACTCCGGGTTTCGATGAATTAG 2280
Query 2237 ACCCTTTTGCTAACTGGCCACCACGGCCCAACA 2269
| || |||||||| ||||| ||||| |||||||
Sbjct 2281 ATCCGTTTGCTAATTGGCCTCCACGTCCCAACA 2313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103453105420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5