BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22880.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335523 jgi|Araly1|335523|fgenesh1_pg.C_scaffold_1002088 2252 0.0
> Ahg335523 jgi|Araly1|335523|fgenesh1_pg.C_scaffold_1002088
Length=1458
Score = 2252 bits (1219), Expect = 0.0
Identities = 1379/1458 (95%), Gaps = 3/1458 (0%)
Strand=Plus/Plus
Query 269 ATGGCTTCTCCTTTCTTCTTTGTG-T--TCCTTCTCTCTGCGCTTTCACTGGAGAATACC 325
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCTTCTCCTTTCTTCTTTGTGTTCCTCCTTCTCTCTGCACTTTCACTGGAGAATACC 60
Query 326 TATGCAAGTCCCAATTACAGAGAAGCACTCTCAAAGTCATTACTCTTTTTCCAAGGTCAG 385
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGCCAGTCCCGATTACAGAGAAGCACTCTCAAAGTCATTACTCTTTTTCCAAGGTCAG 120
Query 386 CGGTCTGGTCGCCTCCCTAGTGACCAACAACTCTCATGGAGGTCTAGCTCTGGCCTCTCT 445
||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 121 CGGTCTGGTCGCCTCCCCCGTGACCAAAAACTCTCATGGAGGTCGAGCTCTGGCCTCTCT 180
Query 446 GATGGCTCATCTGCTCACGTGGACTTGACCGGAGGCTACTATGATGCTGGGGACAATGTG 505
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGGCTCCTCTGCTCATGTGGACTTGACCGGAGGCTACTATGATGCTGGGGACAATGTG 240
Query 506 AAGTTCAATTTCCCGATGGCGTTCACCACAACCATGCTTTCCTGGAGCTCTTTGGAGTAC 565
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 241 AAGTTCAATTTCCCGATGGCGTTCACCACTACGATGCTCTCCTGGAGCTCTTTGGAGTAC 300
Query 566 GGTAAGAAGATGGGACCCGAGCTCCAGAACTCCCGTGTGGCCATCCGTTGGGCCACGGAT 625
||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 GGTAAGAAGATGGGATCCGAACTCCAGAACTCTCGTGTGGCCATCCGTTGGGCCACAGAC 360
Query 626 TATCTACTGAAATGTGCCAGGGCTACACCAGGGAAGCTTTACGTTGGAGTAGGAGATCCT 685
||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||
Sbjct 361 TATCTACTGAAATGTGCCAGGGCCACACCCGGGAAGCTTTATGTTGGTGTAGGAGACCCT 420
Query 686 AATGGTGACCACAAGTGCTGGGAACGACCAGAAGATATGGACACTCCTCGCACAGTCTAC 745
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 AATGGTGATCACAAGTGTTGGGAACGCCCAGAAGATATGGACACTCCTCGCACAGTCTAC 480
Query 746 TCTGTATCTCCCTCAAACCCTGGCTCTGATGTAGCCGCTGAAACCGCTGCTGCTCTAGCT 805
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTGTCTCTCCCTCAAACCCTGGCTCTGATGTAGCCGCTGAAACCGCTGCTGCTCTAGCT 540
Query 806 GCAAGCTCCATGGTTTTCAGGAAAGTAGATCCCAAGTACTCTCGCTTGCTCTTGGCGACA 865
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 541 GCAAGCTCCATGGTTTTCAGGAAAGTTGATCCCAAGTACTCTCGCTTGCTCCTGGTGACA 600
Query 866 GCAAAGAAGGTCATGCAGTTTGCCATTCAATACCGAGGCGCTTACAGTAATTCCCTTTCC 925
|| ||||||||||||||||| || |||||||||| ||||||||| ||| | |||||||||
Sbjct 601 GCGAAGAAGGTCATGCAGTTCGCAATTCAATACCAAGGCGCTTATAGTGACTCCCTTTCC 660
Query 926 TCTTCCGTCTGTCCGTTCTACTGCTCCTACTCTGGCTACAAGGACGAGCTACTATGGGGA 985
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TCTTCCGTCTGTCCTTTTTACTGCTCCTACTCTGGCTACAAGGACGAGCTGGTATGGGGA 720
Query 986 GCAGCATGGCTACATAGAGCAACCAACGACCCGTATTACACAAACTTCATAAAATCCTTA 1045
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCGGCATGGCTGCATAGAGCAACCAACGACCCGTATTACACAAACTTCATAAAATCCTTA 780
Query 1046 GGAGGAGGAGATCAGCCTGACATCTTCAGTTGGGACAATAAATACGCCGGTGCCTATGTT 1105
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGGTGGAGATCAGCCTGACATCTTCAGTTGGGACAATAAATACGCCGGTGCCTATGTT 840
Query 1106 CTTCTCTCACGACGAGCAGTACTAAACAAAGACAACAACTTTGAACTCTACAAGCAAGCA 1165
|||||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 841 CTTCTCTCACGAAGAGCAGTACTGAACAAAGACAACAACTTTGAGCCCTACAAGCAAGCA 900
Query 1166 GCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAAAGTACACT 1225
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 GCTGAGAATTTCATGTGCAAGATCCTTCCAAATTCTCCCTCCTCGTCAACAAAGTACACT 960
Query 1226 AAAGGTGGACTGATGTACAAACTACCTCAGAGCAATCTACAATACGTGACATCAATAACA 1285
||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 961 AAAGGTGGATTGATGTACAAATTACCTCAGAGCAATCTACAATACGTGACATCGATAACA 1020
Query 1286 TTCTTGCTCACCACCTACGCCAAATATATGAAATCCACAAAACAAACTTTCAACTGCGGA 1345
||||||||||| |||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 1021 TTCTTGCTCACGACCTACGCCAAATACATGAAATCCACGAAACACACCTTCAACTGCGGA 1080
Query 1346 AACTCACTAATCGTCCCCAACGCACTGATAAATCTATCGAAGCGACAAGTCGATTACGTC 1405
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1081 AACTCACTCATCGTCCCCAATGCACTGATAAATCTATCGAAGCGACAAGTCGATTACATA 1140
Query 1406 CTCGGTGTGAATCCAATGAAGATGTCGTACATGGTTGGATTCAGCTCCAATTTCCCCAAA 1465
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTCGGTGTGAACCCAATGAAGATGTCGTACATGGTTGGATTCAGCTCCAATTTCCCCAAG 1200
Query 1466 AGAATCCATCACAGAGGTTCCTCTCTCCCGAGCCGAGCCGTCCGTTCCAATTCTCTGGGC 1525
||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1201 AGAATCCATCACAGAGGATCCTCACTCCCGAGCAGAGCCGTCCGTTCCAATTCTCTCGGC 1260
Query 1526 TGTAACGGCGGATTCCAATCATTCAGAACACAAAACCCTAACCCTAACATATTAACCGGA 1585
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGCAACGGCGGATTCCAATCGTTCAGAACACAAAACCCTAACCCTAACATATTAACCGGA 1320
Query 1586 GCAATTGTCGGAGGACCGAATCAAAACGATGAGTATCCAGACCAGAGAGACGATTACACC 1645
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1321 GCAATCGTCGGAGGACCGAATCAAAACGATGAGTATCCAGATCAGAGAGACGATTACACC 1380
Query 1646 CGATCAGAGCCAGCTACATACATCAACGCCGCATTCGTCGGACCATTGGCGTATTTCGCC 1705
|||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 AGATCTGAGCCAGCTACTTACATCAACGCTGCATTCGTCGGACCATTGGCGTATTTCGCC 1440
Query 1706 GCCAGCCGATCGCCGTAA 1723
||| ||||||||||||||
Sbjct 1441 GCCGGCCGATCGCCGTAA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5