BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22882.1

Length=2317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg335524 jgi|Araly1|335524|fgenesh1_pg.C_scaffold_1002089          2106    0.0  
  Ahg339371 jgi|Araly1|339371|fgenesh1_pg.C_scaffold_2001470           924    0.0  


> Ahg335524 jgi|Araly1|335524|fgenesh1_pg.C_scaffold_1002089
Length=1905

 Score = 2106 bits (1140),  Expect = 0.0
 Identities = 1404/1530 (92%), Gaps = 24/1530 (2%)
 Strand=Plus/Plus

Query  663   AAGAAAAGTGAGATTAA-CAATACAGGTAC-GTGGAATGATACA-GAAGGCAAAGACGAT  719
             ||| ||||||||| ||| ||| | || ||| | ||| |||| || ||| |||||||  | 
Sbjct  394   AAGCAAAGTGAGA-TAACCAAGAAAGATACAG-GGATTGATGCAGGAA-GCAAAGA--A-  447

Query  720   AATAACTTTTTGAAGCAAAGTCAATTGAACAAGACAGGCACAGGGAATGATACAGAAAGC  779
              || ||||||||| ||||||||     || | |  | ||| ||  |||||||||||||||
Sbjct  448   GATGACTTTTTGATGCAAAGTC-----AA-ATG--A-GCATAGATAATGATACAGAAAGC  498

Query  780   AGTGACAATGAGTTCTTGGAGCAAAATCAGATGAACAAAACAGTTTTAGGGAATGGTACC  839
             |  ||||||| ||| ||| ||||||||||| |||||||||||| |  |||||||| ||| 
Sbjct  499   AAAGACAATGTGTTTTTGAAGCAAAATCAGGTGAACAAAACAGATCCAGGGAATGATACT  558

Query  840   GAGATCAACGTTTCAAAGGTTGATCAACCATCTCGTGCGGTTCCGCTTGGCCTTGATGAG  899
             |||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  559   GAGATCAATGCTTCAAAGGTTGATCAACCATCTCGTGCTGTTCCACTTGGCCTTGATGAG  618

Query  900   TTCAAGAGCAGAGCGTCCAATTCTCGAAACAAATCGTTATCAGATCAGGTCAGTGGTGTG  959
             || |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| 
Sbjct  619   TTTAAGAGCAGGGCGTCCAATTCTAGAAACAAATCGTTATCGGATCAGGTCAGTGGTGTT  678

Query  960   ATTCACAGGATGGAGCCTGGAGGGAAAGAGTACAATTATGCATCTGCTTCAAAAGGCGCA  1019
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  679   ATTCACAGGATGGAGCCTGGAGGGAAAGAGTACAATTATGCCTCTGCTTCAAAAGGTGCA  738

Query  1020  AAGGTCTTGTCTTCCAACAAGGAAGCAAAGGGGGCTGCAAGCATCCTAAGCAGGGACAAT  1079
             |||||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct  739   AAGGTCCTGTCTTCCAACAAGGAAGCAAAAGGGGCTCCAAGCATCCTAAGCCGGGACAAT  798

Query  1080  GACAAGTACCTCAGAAATCCTTGTTCTACTGAAGGTAAATTTGTTGTTGTAGAACTTTCA  1139
             |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  799   GACAAGTACCTCAGGAATCCCTGTTCTACTGAAGGTAAATTTGTTGTCGTAGAACTTTCA  858

Query  1140  GAAGAAACTTTGGTAAATACCATCAAGATCGCGAATTTTGAGCATTACTCTTCCAATCTG  1199
             |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  859   GAAGAAACATTGGTAAATACCATCAAGATCGCGAATTTCGAGCATTACTCTTCCAATCTG  918

Query  1200  AAAGAGTTTGAGCTTCAAGGCACCCTAGTTTATCCCACTGATACCTGGGTTCATATGGGA  1259
             ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  919   AAAGAGTTTCAGCTTCAAGGCACCCTGGTTTATCCGACTGATACCTGGGTTCATATGGGA  978

Query  1260  AACTTCACGGCTTCAAACGTGAAGCATGAGCAGAACTTCACACTTCTTGAGCCAAAGTGG  1319
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  979   AACTTCACGGCTTCAAACGTGAAGCATGAGCAGAACTTCACACTTCTCGAGCCAAAGTGG  1038

Query  1320  GTGAGATACTTAAAGCTAAACTTTATTAGTCATTATGGTTCAGAATTCTACTGCACCTTG  1379
             |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  1039  GTGAGATACTTAAAGCTAAACTTTCTAAGTCATTATGGTTCAGAATTCTACTGCACCTTG  1098

Query  1380  AGTTTAATAGAAGTCTACGGTGTGGATGCCGTAGAACGAATGCTGGAGGATTTGATATCT  1439
             ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct  1099  AGTTTGATAGAAGTCTACGGAGTGGATGCCGTTGAACGGATGCTGGAGGATTTGATATCT  1158

Query  1440  GTCCAGGACAACAAAAATGCATACAAACCCCGAGAAGGAGATTCTGAGCATAAGGAGAAG  1499
             ||||||||||||||||| |||| |||| || |||| ||||||| |||||| |||||||||
Sbjct  1159  GTCCAGGACAACAAAAACGCATTCAAAACCAGAGAGGGAGATTTTGAGCAGAAGGAGAAG  1218

Query  1500  CCAATGCAGCAAATAGAGTCACTT-GAAGGCGATGATGGTGCTGATAAGAGCACGCACAG  1558
               | ||||||||| ||||||| || ||||| |||||| |||||| || ||||||||||||
Sbjct  1219  GTAGTGCAGCAAACAGAGTCA-TTAGAAGGAGATGATAGTGCTGGTAGGAGCACGCACAG  1277

Query  1559  AGAGAAAGAGAAGGAAGCCCCACCAGAGAATATGTTAGCGAAGACTGAAGCATCAATGGC  1618
             |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1278  AGAGAACGAGAGGGAAGCCCCACCAGAGAATATGTTAGCCAAGACTGAAGCATCAATGGC  1337

Query  1619  GAAGAGTAGTAATAAGCT-GTCAGAGCCCGTGGAAGAGATGAGGCATCATCAGCCAGGGA  1677
             |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct  1338  GAAGAGTAGTAATAAGCTAG-CAGAGCCCGTGGAAGAGATGAGGCATCATCAGCCAGGAA  1396

Query  1678  GCAGAATGCCAGGGGACACAGTACTGAAGATACTGATGCAGAAGTTAAGGTCATTGGACT  1737
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1397  GCAGAATGCCAGGGGACACAGTGCTGAAGATACTGATGCAGAAGTTAAGGTCATTGGACT  1456

Query  1738  TGAACCTATCGATTCTAGAGAGATACTTAGAGGAACTGAAC-CTGAGATACGGGAACATA  1796
             ||||||||||| ||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct  1457  TGAACCTATCGGTTCTAGAGAGATACTTAGAGGAACTGAACACA-AGATACGGGAACATA  1515

Query  1797  TTCAAGGAGATGGACCGTGAAGCCGGTGTGAGAGAAAAGGCGATTGTGGCTTTGAGACTT  1856
             ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  1516  TTCAAGGAGATGGACCGTGAAGCAGGTGTGAGAGAAAAGGCGATTGTGACTTTGAGACTT  1575

Query  1857  GACTTGGAAGGTATGAAGGAAAGGCAAGAGGGGATGGTGAGTgaagcagaggagatgaaa  1916
             |||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||
Sbjct  1576  GACTTGGAAGGTATGAAGGAGAGGCAAGAGAGAATGGTGAGTGAAGCAGAGGAAATGAAA  1635

Query  1917  gagtggcgaaagagagtggaggcagagatggagaaagcagagaaagagaaggaaaacata  1976
             ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct  1636  GAGTGGCGAAAGAGAGTGGAGGCAGCGATGGAGAAAGCAGAGAAAGAGAAAGAAAACACA  1695

Query  1977  agacagagTCTTGAGCAAGTAAGTAAAAGACTTGAGTGGATGGAGAAGAAATGCTTAACG  2036
             ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  1696  AGAGAGAGTCTTGAGGAAGTAAGTAAAAGACTTGAGTGGATGGAGAAGAAAGGCTTAATG  1755

Query  2037  GTTTTCACCGTATGTCTAGGGTTTGGCATTATTGCGGTTATTGCAGTTGTGATTGGTATG  2096
             || |||||||| |||||||||||||||  | | |||||||||||||||||| | ||| ||
Sbjct  1756  GTGTTCACCGTGTGTCTAGGGTTTGGCGCTCTCGCGGTTATTGCAGTTGTGGTCGGTGTG  1815

Query  2097  GGAACTGGTCTAGCAGAGAAGACCGGTAGTGGGGCTTGGCTCTTGTTATTGATTAGCTCA  2156
             ||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  1816  GGAACAGGTCGAGCAGAGAAGACCGGTGGTGGGGCTTGGCTCTTGTTATTAATTAGCTCA  1875

Query  2157  ACATTCATTATGTTCGTTTTGTCTCTTTGA  2186
             ||||||||||||||||||||||||||||||
Sbjct  1876  ACATTCATTATGTTCGTTTTGTCTCTTTGA  1905


 Score =  597 bits (323),  Expect = 1e-169
 Identities = 490/565 (87%), Gaps = 33/565 (6%)
 Strand=Plus/Plus

Query  223  CTAGAAGAAGAGTTTCTGTGAACAAGTTTAATGGAAGGAACAGCTTTTACAAAGtctctt  282
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  11   CTAGAAGAAGAGTTTCTGTGAACAATTTTAATGGAAGGAACAGCTTTTACAAAGTCTCTA  70

Query  283  tgtctcttgtttttctcctttgggttcttctcttcttttcCACCTTGTTGATTAGTCATG  342
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct  71   TGTCTCTGGTTTTTCTCCTTTGGGTTCTTCTCTTCTTATCCACCTTGTTGATTAGTCTTG  130

Query  343  GAGATGGTGCCAAAGATG-AGCCTTTGAACGACTCTATGGGAATGGCTGATCCGGATGAT  401
            |||||||||||||||||  | |||||||| |||||| | ||||| |||||||||||||||
Sbjct  131  GAGATGGTGCCAAAGATACA-CCTTTGAATGACTCTGTAGGAATTGCTGATCCGGATGAT  189

Query  402  GGTCAGTCAGATGAGAAAGTTGTGCCCTTTGATGGACCATTATC-CTTAGCGTCTGCTTC  460
            |||||||||| ||||||||||||| ||||||||||||||||||| || || |||||||||
Sbjct  190  GGTCAGTCAGGTGAGAAAGTTGTGTCCTTTGATGGACCATTATCACT-AGAGTCTGCTTC  248

Query  461  TGTTGATGTTACGTCTGATTTGAGTCGGAATGATGATG-TAAACCTGTCTGAAGAAAGTG  519
            |||| ||||||||||||||||||||||||||||||| | | | |||||||||||| ||||
Sbjct  249  TGTTCATGTTACGTCTGATTTGAGTCGGAATGATGA-GATTACCCTGTCTGAAGATAGTG  307

Query  520  AAGACAAAGAA----C----A-GGAAGCAGAGATCA-GTAGCACAGTTTCAGGGAATGAT  569
            |||||||||||    |    | |||||||||||||| | |||||||||||||||||||||
Sbjct  308  AAGACAAAGAAAAATCTGTGAAGGAAGCAGAGATCAAG-AGCACAGTTTCAGGGAATGAT  366

Query  570  ATT-GAAAGCAAGGACACTTACCTTTTGAAGCAAAGTGAGATAAATAAGAAAGATACAGG  628
             || ||||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||
Sbjct  367  -TTAGAAAGCAAGGACAGTTACATTTCGAAGCAAAGTGAGATAACCAAGAAAGATACAGG  425

Query  629  GATTGATGCAGGAAGCAAATATGATGACTTTCCCAAGAAAAGTGAGATTAACAATACAGG  688
            ||||||||||||||||||| | |||||||||   | | ||||| | || | || ||  | 
Sbjct  426  GATTGATGCAGGAAGCAAAGAAGATGACTTTTTGATGCAAAGTCAAATGAGCA-TA--G-  481

Query  689  TACGTGGAATGATACAGAAGGCAAAGACGATAATAACTTTTTGAAGCAAAGTCAATTGAA  748
             |  |  |||||||||||| |||||||| ||  |   ||||||||||||| |||  ||||
Sbjct  482  -A--T--AATGATACAGAAAGCAAAGACAATG-TG--TTTTTGAAGCAAAATCAGGTGAA  533

Query  749  CAAGACAGG-CACAGGGAATGATAC  772
            ||| ||||  | |||||||||||||
Sbjct  534  CAAAACAGATC-CAGGGAATGATAC  557


> Ahg339371 jgi|Araly1|339371|fgenesh1_pg.C_scaffold_2001470
Length=2001

 Score =  924 bits (500),  Expect = 0.0
 Identities = 1154/1461 (79%), Gaps = 80/1461 (5%)
 Strand=Plus/Plus

Query  760   CAGGGAATGATACAGAAAGCAGTGACAATGAGTTCT-TGGAGCAAAATCAGATGAA-CA-  816
             |||| || | |||||||||||  |||| |||| ||| || || ||| | |||| ||  | 
Sbjct  587   CAGGAAACGTTACAGAAAGCAAAGACATTGAG-TCTATGAAGGAAAGTGAGATAAATAAT  645

Query  817   AA-ACAGTTTTAGGGAATGGTACCGAGATCAAC-GTTTCAAAGGTTGATCAACCATCTCG  874
             || ||||||  |||| ||| ||| |||| | || | ||||||| ||||||| | ||||||
Sbjct  646   AACACAGTTCCAGGGGATGATACAGAGA-CCACTGGTTCAAAGCTTGATCAGCTATCTCG  704

Query  875   TGCGGTTCCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCCAATTCTCGAAACAAATC  934
             ||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||
Sbjct  705   TGCTGTTCCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCTATTTCTAGAGACAAATC  764

Query  935   GTTATCAGATCAGGTCAGTGGTGTGATTCACAGGATGGAGCCTGGAGGGAAAGAGTACAA  994
              || ||||  || |||| ||| || ||||| |||||||||||||| ||||||||||||||
Sbjct  765   TTTGTCAGGCCAAGTCACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAA  824

Query  995   TTATGCATCTGCTTCAAAAGGCGCAAAGGTCTTGTCTTCCAACAAGGAAGCAAAGGGGGC  1054
             ||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| || ||
Sbjct  825   TTATGCAGCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGC  884

Query  1055  TGCAAGCATCCTAAGCAGGGACAATGACAAGTACCTCAGAAATCCTTGTTCTACTGAAGG  1114
             | |||||||| || || ||||||| |||||||| ||| |||| || |||||||| |||||
Sbjct  885   TTCAAGCATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACCGAAGG  944

Query  1115  TAAATTT-GTTGTTGTAGAACTTTCAGAAGAAACTTTGGTAAATACCATCAAGATCGCGA  1173
              ||| || |||||  ||||||||||||||||||| ||||| || || |||||||| || |
Sbjct  945   -AAAGTTCGTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAA  1003

Query  1174  ATTTTGAGCATTACTCTTCCAATCTGAAAGAGTTTGAGCTTCAAGGCACCCTAGTTTATC  1233
             |||| ||||||||||||||||||||||| || |||||| ||   |||||| | ||||| |
Sbjct  1004  ATTTCGAGCATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGCACCTTGGTTTA-C  1062

Query  1234  CC-ACTGATACCTGGGTTCATAT-GGGAAACTTCACGGCTTCAAACGTGAAGCATGAGCA  1291
             || |||||||| ||||||||| | ||||| ||||||||||| |||| ||||||| |||||
Sbjct  1063  CCGACTGATACGTGGGTTCATCTAGGGAA-CTTCACGGCTTTAAACATGAAGCACGAGCA  1121

Query  1292  GAACTTCACACTTCTTGAGCC-AAAGTGGGTGAGATA-CTTAAAGCTAAACTTTATTAGT  1349
             |||||| |||||| | || || ||| ||||||||||| || |||||||||| |  | || 
Sbjct  1122  GAACTTTACACTTGTAGATCCCAAA-TGGGTGAGATATCT-AAAGCTAAACCTGCTAAGC  1179

Query  1350  CATTATGGTTCAGAATTCTACTGCACCTTGAGTTTAATAGAAGTCTACGGTGTGGATGCC  1409
             ||||| |||||||||||||||||||||||||||||| |||||||||| || ||||| || 
Sbjct  1180  CATTACGGTTCAGAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCT  1239

Query  1410  GTAGAACGAATGCTGGAGGATTTGATATCTGTCCAGGACAACAAAAATGCATACAAACCC  1469
             || || |||||||||||||||||||||||  |||| ||||| || | |  ||  ||||||
Sbjct  1240  GTGGAGCGAATGCTGGAGGATTTGATATCAATCCAAGACAAGAACA-T--ATTGAAACCC  1296

Query  1470  CGAGAAGGAGATTCTGAGCATAA-G-GA-GAAGCCAATGCA-GCAAATAGAGTCACTT-G  1524
             | ||||||| |  ||||||| || | || |||| ||||  | ||||| |||||| ||| |
Sbjct  1297  CAAGAAGGAAACACTGAGCAGAAAGAGAAGAAGACAATAAAAGCAAA-AGAGTC-CTTTG  1354

Query  1525  AAGGCGATGATGGTGCTGA-TAAGAGCACGCACAGAGAGAAAGAG-AAGGAAGCCCCACC  1582
             || ||||||| |     || ||| | || | | || ||||| ||  ||| ||||| ||||
Sbjct  1355  AAAGCGATGAAGACAA-GAGTAA-A-CA-G-A-AG-GAGAAGGAACAAG-AAGCCTCACC  1406

Query  1583  AGAGAATATG-TTAGCGAA-GACTGAAGCATCAATGGCGAAGAGTAGTAATAAGCTGTCA  1640
             |||||||  | || | ||| || ||||| |||||| | || ||  || || | |||| ||
Sbjct  1407  AGAGAATGCGGTT-GTGAAAGA-TGAAGTATCAATTGAGA-GA--AG-AA-A-GCTGCCA  1458

Query  1641  GAGCCCGTGGAAGAGATGAGGCATCATCAGCCAGGGAGCAGAATGCCAGGGGACACAGTA  1700
             || || ||||||||||| |  |||||  | ||||| ||||||||||| |||||||| || 
Sbjct  1459  GATCCGGTGGAAGAGATAAAACATCA--A-CCAGGAAGCAGAATGCCGGGGGACACTGTC  1515

Query  1701  CTGAAGATACTGATGCAGAAGTTAAGGTCATTGGACTTGAACCTATC-GATTCTAGAGAG  1759
             ||||||||||||||||||||| |||||||  ||||| ||| | |||| | |||| |||||
Sbjct  1516  CTGAAGATACTGATGCAGAAGATAAGGTCGCTGGACGTGAGCTTATCAG-TTCTTGAGAG  1574

Query  1760  ATACTTAGAGGAACTGAAC-CTGAGATACGGGAACATATTCAAGGAGATGGACCGTGAAG  1818
              ||||| ||||| | || | | || ||||||||  |||||||||||||||||| ||| ||
Sbjct  1575  TTACTTGGAGGAGCGGAGCTC-GAAATACGGGATGATATTCAAGGAGATGGAC-GTGGAG  1632

Query  1819  CCG-GTGTGAGAGAAAAGGCGATTGTGGCTTTGAGACTTGACTTGGAAGGTATGAAGGAA  1877
              || |   |||||| |||| | | | | || ||||||| ||  | |  || |||||||| 
Sbjct  1633  GCGAGCAAGAGAGAGAAGGAGGTGGAGACTATGAGACTGGAGGTAGCGGGAATGAAGGAG  1692

Query  1878  AG-GCAAGAGGGGATGGTGA-GTgaagc-agaggagatgaaagagtggcgaaagagagtg  1934
             || | ||||| | | |  || | || || |  ||||||||  | |||||| | |||||||
Sbjct  1693  AGCG-AAGAGAGTACGAAGAAG-GAGGCCAT-GGAGATGAGGGGGTGGCGTAGGAGAGTG  1749

Query  1935  gaggcagagatggagaaagcagagaaagagaagga-aaacat-aagacagagTCTT-GAG  1991
             ||| ||||| | ||||| || ||||| ||||| || |||  | |||  ||||  || |||
Sbjct  1750  GAGACAGAGCTTGAGAAGGCTGAGAATGAGAAAGAGAAAG-TGAAGG-AGAGG-TTAGAG  1806

Query  1992  CAAGTAA-GTAAAAGACTTGAGTGGATGGAGAAGAAATGCT-TAACGGTTTTCACCGTAT  2049
             |||||   | ||| || | |||||||||||||||||| | | |    || |||||  | |
Sbjct  1807  CAAGTGTTGGAAA-GAATGGAGTGGATGGAGAAGAAAGG-TGTGGTTGTGTTCACAATCT  1864

Query  2050  GTCTAGGGTTTGGCATTATTGCGGTTATTGCAGTTGTGATTGGTAT-GGGAACTGGTCTA  2108
             || | ||||||||   ||| || ||| | || || ||  ||||||  |||| | |||| |
Sbjct  1865  GTGTCGGGTTTGGGGCTATAGCAGTTGTAGCCGTGGTTCTTGGTAAAGGGA-CAGGTCGA  1923

Query  2109  GCAGAGAAGACC-GGTAG-TGGGGCTTGGCT-CTTGTTATTGATTAGCTCAACATTCATT  2165
             ||||||||| || ||| | | || ||||||| || ||||||||| ||||| |||||| ||
Sbjct  1924  GCAGAGAAG-CCAGGTGGCTTGG-CTTGGCTTCT-GTTATTGATAAGCTCGACATTCGTT  1980

Query  2166  ATGTTCGTTTTGTCTCTTTGA  2186
              ||||| ||||||||||||||
Sbjct  1981  CTGTTCATTTTGTCTCTTTGA  2001



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 87264751295


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5