BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22885.2
Length=350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472536 jgi|Araly1|472536|fgenesh2_kg.1__2490__AT1G22885.1 329 6e-90
> Ahg472536 jgi|Araly1|472536|fgenesh2_kg.1__2490__AT1G22885.1
Length=372
Score = 329 bits (178), Expect = 6e-90
Identities = 267/305 (88%), Gaps = 26/305 (9%)
Strand=Plus/Plus
Query 2 ACTTATTTTAAGCAATGGCTACAAAAGCATCAAATTTAGTTGTTTTTCTTCTCTCTTTGC 61
||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 24 ACTTATTTTAAATAATGGCTACAAAGGCATCACATTTAGTTGTTTTTCTTCTCTCTTTGC 83
Query 62 TTCTTCTGTTCTTATTGATATCCTTTCAAGTTGGAGTCGCCGACGCCACACGCAACAAAC 121
|||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 84 TTCTTCTGCTCTTATTGATCTCCTTTCAAGTTGGAGTCGCCGACGCCAAACGCAACAAA- 142
Query 122 CAGGTCAAGGACAAGAACAGCGTGTGGATTATGATTACCCTCGCCCTCCCACCGCCCCTA 181
| ||||| ||| |||| | | || ||||||||||||||||||||||||||||
Sbjct 143 C--GTCAA-GAC-----CAGC-T-T---TT-GGATTACCCTCGCCCTCCCACCGCCCCTA 188
Query 182 TATATCTGCCGCCGTCTAAATCGCGCAAAGGAAAAGGTCCATAAGCCAAAGTAC-T---T 237
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 189 TATATCTGCCGCCCTCTAAATCGCGCAAAGGAAAAGGTCCATAAGCCAAAGTACGTACGT 248
Query 238 TTTGACAAGTGATGGAGAAGAAACTATAATTGTCAA-GACTCAAGAGACTCGAGATTAAT 296
|||||| ||||||||||||||||||||| | | || | |||||| ||||||||||||
Sbjct 249 TTTGACCAGTGATGGAGAAGAAACTATA-TA-T-AATGG-TCAAGA--CTCGAGATTAAT 302
Query 297 GTTGT 301
|||||
Sbjct 303 GTTGT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12438722014
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5