BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22900.1

Length=847
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912146 jgi|Araly1|912146|Al_scaffold_0001_2400                    416    1e-115


> Ahg912146 jgi|Araly1|912146|Al_scaffold_0001_2400
Length=483

 Score =  416 bits (225),  Expect = 1e-115
 Identities = 262/279 (94%), Gaps = 6/279 (2%)
 Strand=Plus/Plus

Query  327  GTGGGGAGAGCTCAGGGGTTGTACGCATCGACGGACATGAAAACGTTTGG-TT-TT-ACA  383
            |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||  ||
Sbjct  169  GTGGGGAGAGCTCAGGGGTTATACGCATCGACGGACATGAAAACGTTTGGCTTCTTCTCA  228

Query  384  ATGGTCTTTAACTTTGTGTTCACGGAAGGAGAGTTTAACGGCAGCACCGCTGCGTTGTAT  443
            |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct  229  ATGGTCTTTAACTTGGCGTTCACGGAAGGAGAGTTTAACGGCAGCACCGCTGCGATGTAT  288

Query  444  GGACGGAATCCGATACTGCTGGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGCGAT  503
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  289  GGACGTAATCCGATACTGCTGGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGCGCT  348

Query  504  TTCAGGTTTGCTAGAGGATATGCACTG-CCAAAGACTTATAAGGTTGTAAATATAGATGC  562
            ||||||||||||||||| ||||||| | |||||||||||||| ||||| |||||||||||
Sbjct  349  TTCAGGTTTGCTAGAGGCTATGCAC-GACCAAAGACTTATAAAGTTGTTAATATAGATGC  407

Query  563  CGTGGTTGAGTATAATGTCTTCATTTGGCATTA-ACTTT  600
            ||||||||||||||||||||||||||||||||  |||||
Sbjct  408  CGTGGTTGAGTATAATGTCTTCATTTGGCATTTCACTTT  446


 Score =  246 bits (133),  Expect = 2e-64
 Identities = 157/169 (93%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  33   ATGGCTACACCTTTTCTGCTTCTTCTACTTCCTTTGATATTCTCAACTGTTCTCCTTCTT  92
            ||||| |||||||||||||||||||| |||||| |||| |||||| || |||||||||||
Sbjct  1    ATGGCCACACCTTTTCTGCTTCTTCTTCTTCCTATGATCTTCTCATCTATTCTCCTTCTT  60

Query  93   ACCATCACCGTAACACAATCCAAACCTTACTCCAAAACGACTCCGTTTCAAGGAAATAAG  152
            ||||||||||| ||||||||| || |||||||||||||||| || ||| |||||||||||
Sbjct  61   ACCATCACCGTTACACAATCCGAAGCTTACTCCAAAACGACGCCATTTGAAGGAAATAAG  120

Query  153  CCGGATAAACTCACACACCTCCACTTCTACTTCCATGACATCATCTCCG  201
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCGGATAAACTCACACACCTCCACTTCTACTTCCATGACATCATCTCCG  169



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31337037774


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5