BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22920.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472541 jgi|Araly1|472541|fgenesh2_kg.1__2495__AT1G22920.1 1895 0.0
> Ahg472541 jgi|Araly1|472541|fgenesh2_kg.1__2495__AT1G22920.1
Length=1296
Score = 1895 bits (1026), Expect = 0.0
Identities = 1124/1172 (96%), Gaps = 4/1172 (0%)
Strand=Plus/Plus
Query 69 TCT-TCTTTCTTTCTGACTCAAACCCTCAAATCAATTCTCGCGA-TTAAGCAAAACCCTA 126
||| ||||||||||| ||||||||||| ||||||||| |||||| || ||||||||||||
Sbjct 37 TCTCTCTTTCTTTCTTACTCAAACCCTTAAATCAATTTTCGCGATTTTAGCAAAACCCTA 96
Query 127 GATTTATTCTACTCTTCGAAGTCGATTTCAATGGAAGGTTCCTCGTCAGCCATCGCGAGG 186
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 97 GATTTCTTCTACTCTTCGAAGTCGATTTCAATGGAAGGTTCGTCGTCAGCCATCGCGAGG 156
Query 187 AAGACATGGGAGCTAGAGAACAACATTCTCCCAGTGGAACCAACCGATTCAGCCTCCGAC 246
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 157 AAGACATGGGAGCTAGAGAACAACATTCTCACAGTGGAACCAACCGATTCAGCCTCCGAT 216
Query 247 AGTATATTCCACTACGACGACGCTTCACAAGCCAAAATCCAGCAGGAGAAGCCATGGGCC 306
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 217 AGTATTTTCCACTACGACGACGCTGCGCAAGCCAAAATCCAGCAGGAGAAGCCATGGGCC 276
Query 307 TCCGATCCTAACTACTTCAAGCGCGTTCACATCTCAGCCCTTGCTCTTCTCAAGATGGTG 366
||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||
Sbjct 277 TCCGATCCTAACTACTTCAAGCGCGTTCAAATCTCAGCACTCGCTCTTCTTAAGATGGTG 336
Query 367 GTTCACGCTCGCTCCGGTGGCACAATCGAGATCATGGGTCTTATGCAGGGTAAA-ACCGA 425
|||||||||||||| ||||| |||||||||||||||||||| |||||||| ||| |||||
Sbjct 337 GTTCACGCTCGCTCTGGTGGAACAATCGAGATCATGGGTCTGATGCAGGG-AAAGACCGA 395
Query 426 GGGTGATACAATCATCGTTATGGATGCTTTTGCTTTGCCTGTTGAAGGTACTGAGACTAG 485
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 396 GGGTGATACCATCATTGTTATGGATGCTTTTGCTTTGCCTGTTGAAGGAACTGAGACTAG 455
Query 486 GGTTAATGCTCAGTCTGATGCCTATGAGTATATGGTTGAATACTCTCAGACCAGCAAGCT 545
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 456 GGTTAATGCTCAGGCTGATGCGTATGAGTATATGGTTGAATACTCTCAGACCAACAAGCT 515
Query 546 GGCTGGGAGGTTGGAGAACGTTGTTGGATGGTATCACTCTCACCCTGGGTATGGATGTTG 605
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 516 GGCTGGGAGGTTGGAGAACGTTGTTGGATGGTATCACTCTCACCCTGGATATGGATGTTG 575
Query 606 GCTCTCGGGTATTGATGTTTCGACACAGATGCTTAACCAACAGTATCAGGAGCCATTCTT 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 GCTCTCGGGTATTGATGTTTCGACACAGATGCTTAACCAACAGTATCAGGAGCCTTTCTT 635
Query 666 AGCTGTTGTTATTGATCCAACAAGGACTGTTTCGGCTGGTAAGGTTGAGATTGGGGCATT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AGCTGTTGTTATTGATCCAACAAGGACTGTTTCGGCTGGTAAGGTTGAGATTGGGGCATT 695
Query 726 CAGAACATATCCAGAGGGACATAAGATCTCGGATGATCATGTTTCTGAGTATCAGACTAT 785
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 696 CAGAACATATCCAGAGGGACATAAGATCTCGGATGATCATGTATCTGAGTATCAGACTAT 755
Query 786 CCCTCTTAACAAGATTGAGGACTTTGGTGTACATTGCAAACAGTACTACTCATTGGACAT 845
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCCTCTTAACAAGATCGAGGACTTTGGTGTACATTGCAAACAGTACTACTCATTGGACAT 815
Query 846 CACTTATTTCAAGTCATCTCTCGATAGTCACCTTCTGGATCTCCTTTGGAACAAGTACTG 905
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 816 CACTTATTTCAAGTCATCTCTCGATAGTCATCTTCTGGATCTCCTTTGGAACAAGTACTG 875
Query 906 GGTGAACACTCTTTCTTCTTCCCCACTGTTGGGCAATGGAGACTATGTTGCCGGGCAAAT 965
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 876 GGTGAACACTCTTTCTTCTTCCCCACTGTTAGGCAATGGAGACTATGTTGCCGGACAAAT 935
Query 966 ATCAGACTTGGCTGAGAAGCTCGAGCAAGCGGAGAGTCAGCTCGCTAACTCCCGGTATGG 1025
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| |||
Sbjct 936 ATCAGACTTGGCTGAGAAGCTCGAGCAAGCGGAGAATCAGCTTGCTCACTCCCGGTTTGG 995
Query 1026 AGGAATTGCGCCAGCCGGTCACCAAAGGAGGAAAGAGGATGAGCCTCAACTCGCGAAGAT 1085
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 996 AGGAATTGCACCAGCCGGTCACCAGAGGAGAAAAGAGGATGAGCCTCAACTCGCGAAGAT 1055
Query 1086 AACTCGGGATAGTGCAAAGATAACTGTCGAGCAGGTCCATGGACTAATGTCACAGGTTAT 1145
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1056 AACTCGGGATAGTGCAAAGATAACCGTCGAGCAGGTCCATGGACTAATGTCACAGGTTAT 1115
Query 1146 CAAAGACATCTTGTTCAATTCCGCTCGTCAGTCCAAGAAGTCTGCTGACGACTCATCAGA 1205
|||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||
Sbjct 1116 CAAAGACATCTTGTTCAATTCCGCACGCCAGTCCAAGAAGTCTCCCAACGACTCATCAGA 1175
Query 1206 TCCAGAGCCCATGATTACATCGTGAAGTTGGT 1237
||||||||||||||||||||||||||||||||
Sbjct 1176 TCCAGAGCCCATGATTACATCGTGAAGTTGGT 1207
Score = 154 bits (83), Expect = 2e-36
Identities = 87/89 (98%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1277 TTTGACCCGGTTTATGAGGCAATGCCCATTGTTCCCTATATCTCTAGTGTAGTATCTGCT 1336
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1208 TTTGACCCGGTTTATGAGGCAATGCACATTGTTCCCTATATCTCTAGTGTAGTATCTGCT 1267
Query 1337 TCAGACAAAGATCTTTGGGTTATTAAATG 1365
|||||||||| ||||||||||||||||||
Sbjct 1268 TCAGACAAAGCTCTTTGGGTTATTAAATG 1296
Score = 80.5 bits (43), Expect = 3e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 14 TCTCGCAAACCGGTTTAACCCAAGAACCCAAAGATCTCTCTCT 56
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCGCAAACCGGTTTAACCCAAGAACCCAAAGATCTCTCTCT 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5