BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22940.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472545 jgi|Araly1|472545|fgenesh2_kg.1__2499__AT1G22940.1 2619 0.0
> Ahg472545 jgi|Araly1|472545|fgenesh2_kg.1__2499__AT1G22940.1
Length=1716
Score = 2619 bits (1418), Expect = 0.0
Identities = 1588/1670 (95%), Gaps = 12/1670 (1%)
Strand=Plus/Plus
Query 10 aataaaataaaataaaataaaGAGAAGGGACGAGAAATGAATAGCTTAGGAGGAATTAGG 69
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AATAAAATAAAAGGAAATAAAGA-AAGGGACGAGAAATGAATAGCTTAGGAGGAATTAGA 59
Query 70 AGTTGGCCGGCGAATTGGAGAAGTACGACGGCGTCAATGACGACGACGGAGAGCGTTAGA 129
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 60 AGTTGGCCGGCGAATTGGAGAAGCACGACGGCGTCAATGACGACGACGGAGAGTGTTAGA 119
Query 130 AAGGTACCGCAAGTTTTAACAGTGGCGGGATCAGATTCCGGCGCCGGAGCTGGAATTCAA 189
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 120 AAGGTACCGCAAGTTCTAACTGTGGCGGGATCAGATTCCGGCGCCGGAGCTGGAATCCAA 179
Query 190 GCCGACCTTAAAGTCTGCGCAGCTCGTGGTGTGTATTGCGCTTCCGTCATAACCGCAGTC 249
|| || || ||||| || || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 180 GCAGATCTCAAAGTTTGTGCCGCTCGTGGTGTCTATTGCGCTTCCGTCATAACCGCCGTC 239
Query 250 ACTGCTCAGAACACTCGAGGAGTTCAATCTGTTCATCTTCTTCCTCCGGAATTTATCTCT 309
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 240 ACTGCTCAGAACACTCGAGGAGTCCAATCTGTTCATCTTCTACCTCCGGAATTCGTCTCT 299
Query 310 GAACAGCTCAAATCCGTCCTCTCTGACTTCGAATTCGACGTCGTGAAGACTGGGATGCTT 369
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 300 GAACAGCTCAAATCTGTCCTCTCTGACTTTGAATTTGACGTCGTGAAGACTGGGATGCTT 359
Query 370 CCTTCTACTGAGATCGTTGAGGTTCTTCTTCAAAATCTATCAGATTTTCCAGTTCGTGCT 429
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CCTTCTACTGAGATCGTTGAGGTTCTTCTTCAAAATCTAACAGATTTTCCAGTTCGTGCT 419
Query 430 TTGGTTGTTGATCCTGTGATGGTATCTACTAGTGGTCACGTT-TTGGCTGGTTCTTCTAT 488
||||||||||||||||||||||||||||| ||||| || ||| || ||||||||||||||
Sbjct 420 TTGGTTGTTGATCCTGTGATGGTATCTACGAGTGGGCATGTTCTT-GCTGGTTCTTCTAT 478
Query 489 TCTCTCTATCTTTAGAGAGAGATTACTACCAATTGCTGACATAATTACCCCAAATGTGAA 548
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 479 TCTCTCTATCTTTAGAGAGAGATTACTGCCAATTGCTGACATTATAACCCCAAATGTGAA 538
Query 549 AGAGGCTTCTGCTTTACTTGATGGTTTTCGGATTGAGACTGTTGCAGAAATGCGGTCTGC 608
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 539 AGAGGCATCTGCTTTACTTGGTGGTTTTCGGATTGAGACTGTTGCAGATATGCGGTCTGC 598
Query 609 AGCAAAGTCGTTGCATGAAATGGGTCCTAGATTCGTACTTGTTAAAGGTGGTGATCTTCC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGCAAAGTCGTTGCATGAAATGGGTCCTAGATTCGTACTTGTTAAAGGTGGTGATCTTCC 658
Query 669 TGACTCATCAGATTCAGTAGATGTTTACTTTGATGGCAAGGAGTTTCATGAACTCCGTTC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGACTCATCAGATTCAGTAGATGTTTACTTTGATGGCAAGGAGTTTCATGAACTCCGTTC 718
Query 729 TCCTCGCATAGCTACAAGAAATACTCATGGGACTGGTTGCACTTTGGCTTCCTGTATTGC 788
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 TCCTCGCGTAGCTACAAGAAATACTCATGGGACTGGTTGCACTTTGGCTTCATGTATTGC 778
Query 789 AGCTGAGCTTGCAAAAGGCTCTTCCATGCTCTCAGCCGTCAAGGTGGCTAAACGCTTTGT 848
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 779 AGCAGAGCTTGCAAAAGGCTCTTCCATGCTCTCAGCCGTGAAGGTGGCTAAACGCTTCGT 838
Query 849 CGATAATGCCCTAGATTACAGCAAAGATATTGTCATTGGCAGTGGGATGCAAGGACCTTT 908
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 839 CGATAATGCCCTAGATTACAGCAAAGATATTGCCATTGGCAGTGGGATGCAAGGACCGTT 898
Query 909 TGACCAtttttttGGTCTTAAGAAGGATCCTCAAAGTTCTCGATGCAGCATATTCAATCC 968
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 TGACCACTTTTTCGGTCTTAAGAAGGATCCCCAAAGTTCTCGATGCAGCATATTCAATCC 958
Query 969 AGATGACCTGTTTCTATATGCTGTTACAGATTCTAGAATGAACAAAAAATGGAACCGTTC 1028
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 959 AGATGACCTGTTTCTATATGCTGTTACAGATTCTAGAATGAACAGAAAATGGAACCGGTC 1018
Query 1029 CATTGTGGATGCCTTGAAAGCTGCTATAGAGGGAGGGGCCACCATCATACAACTGAGGGA 1088
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1019 CATTGTGGATGCCGTGAAAGCTGCTATAGAGGGAGGGGCCACAATCATACAACTGAGGGA 1078
Query 1089 GAAAGAAGCCGAAACACGGGAGTTTCTTGAAGAAGCAAAAGCATGCATTGATATATGCCG 1148
||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 1079 GAAAGAAGCCGAAACACGGGAGTTTCTCGAAGAAGCAAAAGCATGCGTTGACATATGCCG 1138
Query 1149 GTCCCATGGAGTTAGTTTGCTGATAAACGACAGGATCGACATTGCCCTTGCTTGTGATGC 1208
|||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1139 GTCCCACAGAGTTATTTTGCTGATAAACGACAGGATCGACATCGCCCTTGCTTGTAATGC 1198
Query 1209 TGATGGAGTCCATGTTGGTCAATCCGACATGCCGGTTGATCTAGTTCGGTCTCTTCTTGG 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGATGGAGTCCATGTTGGTCAATCCGACATGCCGGTTGATCTAGTTCGGTCTCTTCTTGG 1258
Query 1269 CCCGGACAAGATCATAGGGGTCTCATGTAAGACACCAGAACAAGCTCATCAAGCATGGAA 1328
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCCGGACAAGATCATCGGGGTCTCATGTAAGACACCAGAACAAGCTCATCAAGCATGGAA 1318
Query 1329 AGATGGTGCGGACTACATTGGGTCAGGAGGAGTTTTTCCAACGAACACTAAGGCCAACAA 1388
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1319 AGATGGTGCGGACTACATTGGGTCCGGAGGAGTTTTTCCAACAAACACTAAGGCCAACAA 1378
Query 1389 TCGTACCATAGGACTTGATGGGCTAAAAGAAGTATGTGAAGCATCAAAATTACCGGTTGT 1448
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1379 TCGTACCATAGGACTTGATGGGCTAAAAGAAGTATGTGAGGCATCAAAATTACCGGTCGT 1438
Query 1449 TGCAATCGGAGGCATAGGGATCTCAAATGCTGGGTCTGTTATGCAGATCGATGCACCGAA 1508
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1439 TGCCATCGGAGGCATAGGGATCTCAAATGCTAAGTCTGTTATGCAGATCGATGCACCGAA 1498
Query 1509 CCTAAAAGGTGTAGCAGTTGTGTCAGCTTTGTTCGACCAAGATTGTGTTTTGACTCAAGC 1568
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CCTAAAAGGCGTAGCAGTTGTGTCAGCTTTGTTCGACCAAGATTGTGTTTTGACTCAAGC 1558
Query 1569 TAAGAAGTTGCATAAAACGCTTAAAGAGAGCAAAAGGGGAATTTGAA--C-C--AAAAGG 1623
||| |||||||||||||||||||||||||||||||||| |||||||| | | ||||||
Sbjct 1559 TAAAAAGTTGCATAAAACGCTTAAAGAGAGCAAAAGGGAAATTTGAAGACGCCCAAAAGG 1618
Query 1624 TGTTTTTAGTTTTG-TTTT-AGGTGCTTACAAAATGTTGTAAACCTTTTA 1671
|||||||| ||||| |||| | ||||||||||||||||||||||||
Sbjct 1619 TGTTTTTA-TTTTGGTTTTCACAAA-TTACAAAATGTTGTAAACCTTTTA 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5