BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22970.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472548 jgi|Araly1|472548|fgenesh2_kg.1__2502__AT1G22970.1 1611 0.0
Ahg476247 jgi|Araly1|476247|fgenesh2_kg.2__1377__AT1G71150.1 628 2e-179
Ahg912154 jgi|Araly1|912154|Al_scaffold_0001_2408 449 2e-125
> Ahg472548 jgi|Araly1|472548|fgenesh2_kg.1__2502__AT1G22970.1
Length=1201
Score = 1611 bits (872), Expect = 0.0
Identities = 1087/1189 (91%), Gaps = 22/1189 (2%)
Strand=Plus/Plus
Query 1 AAGACAAAAATGGTGAAAACAAAGAAAGAAGATCTAAATCAATTTCTGATTCCTCGTCTC 60
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAGACAAAAATGGTGAAATCAAAGAAAGAAGATCTAAATCAATTTCTAATTCCTCGTCTT 60
Query 61 AACACCATCTACGAAACCCTCCAGTTGTTCGATGGAACAGCTTCTCCTACAGTGGA-AAG 119
|||||||||||||| || || |||||||||||| |||||||||||||||||||||| ||
Sbjct 61 AACACCATCTACGATACTCTACAGTTGTTCGATCGAACAGCTTCTCCTACAGTGGAGAA- 119
Query 120 AGTTAATTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGT 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTAATTGGAACGATGTTCTCCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGT 179
Query 180 GGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTC 239
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 180 GGGAATGCTATGGACTGGAGAATCTCCTAAAGCTGAATCACTTAAAGAGACAATGGAGTC 239
Query 240 TTACTTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGG 299
|||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 240 TTACTTCAATGCTCTTCAAGGGTTTTTGCTCTGTTGCCATGGAAGCACAGTTGGTGCTGG 299
Query 300 ACCTACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAG 359
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 300 ACCTACACTTTCTTCAATCATACATGTTTCTGTTAAGCAAATCGTTGATTCCAGCTTTAG 359
Query 360 ATTGTTGCAGGGTTCTGTTTCTCT-ATACGAGGGATCGTATGAGAAGGATAAGAAGCCGT 418
|||||||||||||||||| || || |||||||||||| ||||||||||||||||||||||
Sbjct 360 ATTGTTGCAGGGTTCTGTCTC-CTTATACGAGGGATCATATGAGAAGGATAAGAAGCCGT 418
Query 419 CTATTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGAAGGTTCCTG 478
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 419 CTATTCCGCAGCTTTCGGGAGTGGTTTGGGAGGCATGCTCCAGTTTCAAGAAGGTTCCTG 478
Query 479 CAACAAACATTACTGCGATTGGTAGAGCTATTACACAGGTTGCGGTTTCCATGAAGGATG 538
||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 479 CAACAAACATTGTTGCGATTGGTAGGGCTATTACACAGGTTGCAGTTTCCATGAAGGATG 538
Query 539 TTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGTGAGGCATCTG 598
||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||
Sbjct 539 TTCTTAGGGAGATGAAAGAAGTGAAGCCAGCTTGTCATTCAGCTGAATGTGAGGCATCTG 598
Query 599 GTGATAATATGTCTAGtgatgatgatgatgatgaCGATTTAGGCGATGATTTGTCTCCTG 658
||||||||||||| | | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 599 GTGATAATATGTC--G-G--G-TGATGATGATGACGATTTAGGCGATGATTTGTCTCTTG 652
Query 659 AAGAAATGGAAGTTGCTACAATGGTTACTGAGATTGTCTCTGAAACTATCATGGTGATAA 718
|||||||||||||||||| |||||| ||| ||||| ||||| || |||||||||||||
Sbjct 653 AAGAAATGGAAGTTGCTAGGATGGTTGTTGATATTGTGTCTGAGACGATCATGGTGATAA 712
Query 719 AAGAACTCATTCGAGTTATCACTGGTATGATTAAGATGGAGAATCCAAAGGATAATAGTG 778
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 713 AAGAACTCATTCGAGTTATCACTGGCATGATTAAGATGGAGAATCCAAATGATAATAGCG 772
Query 779 GGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGTGTCAAGGAACTGGTGTACAAATCG 838
||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 773 GGTTTGTGGAGTCACTTGAGAAGCTACTGAAGTTGTGTCAAGGAACCGGAGTACAAATCG 832
Query 839 ATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGATGAACAAGATGAAGCAAACAGTGA 898
|||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 833 ATGAGCTTGGAGCTTGCGTCTATCCACCGCAGGAGATGGACAAAATGAAGCAAACGGTAA 892
Query 899 AGGTTATACAGGGAAATCTAGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTT 958
|| | ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGATAATAAAGGGGAATCTCGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTT 952
Query 959 CAGACGGCTTTTCGGGAGCTTGCGGGAAGCTGCGAAACTCCTTGAAACATATGGAAACTG 1018
||||||||| ||||||||||||||| |||||| ||||||| |||||||| ||||||| ||
Sbjct 953 CAGACGGCTGTTCGGGAGCTTGCGGAAAGCTGAGAAACTCGTTGAAACACATGGAAATTG 1012
Query 1019 AATTGGATAAAAGATGTGAAGCTGAGCTAGTAGTTGAAATGCAGAATGTTACTCTTGACA 1078
|||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 1013 AATTGGGTAAAAGATGTGAAGCAGAGCTAGTCGTTGAAATGCAGAATGTTACTCTTGGCA 1072
Query 1079 GTTAG------TTTGGATTTTGCAATTGAGttttttttCGGTTTGTTTCAGT-GGCTTGT 1131
|||| ||||||||||||||||||||||||||| |||||||||| || || ||
Sbjct 1073 ATTAGAAAGAGTTTGGATTTTGCAATTGAGTTTTTTTTTGGTTTGTTTCTGTCGGAAAGT 1132
Query 1132 GTCTTGTAG--TA-A-CATTCATCTAATGTTCAATGTGTTGTACACGTT 1176
| ||||| | | | ||||||| ||||||||||||||||| | |||||
Sbjct 1133 GGCTTGT-GCCTTTAGCATTCATGTAATGTTCAATGTGTTGCATACGTT 1180
> Ahg476247 jgi|Araly1|476247|fgenesh2_kg.2__1377__AT1G71150.1
Length=1156
Score = 628 bits (340), Expect = 2e-179
Identities = 834/1064 (78%), Gaps = 67/1064 (6%)
Strand=Plus/Plus
Query 60 CAACACCATCTACGAAACCCTCCAGTTGTTCGATGGAA-CAGCTTCTCCTACAGTGGA-A 117
||| |||||| | || || ||||||||||| || | || | ||||| ||| || |
Sbjct 85 CAATACCATCAATGATACTCTCCAGTTGTTTGA-GCAAGTTCCGTCTCCGACACAAGACA 143
Query 118 AGAGTTAA-TTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCAT 176
| | |||| ||||||||||| |||||||| |||||||| ||||| |||||||| || ||
Sbjct 144 A-A-TTAAGCTGGAACGATGTCCTTCAGATTTCTGATCATCTCTCCAAACAAGCTACTAT 201
Query 177 AGTGGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAA-GAGACTATGG 235
||||||||||||||||||||||||| |||||||| |||| ||| |||| || |||||||
Sbjct 202 AGTGGGAATGCTATGGACTGGAGAACCTCCAAAATCTGAAGCAC-TAAAGGAAACTATGG 260
Query 236 AGTCTTACTTCAATGCCCTTCAAGGGTTTTTACT-CTGTTGCCATGGAAGCACT-CTTGG 293
|||| |||||||| | |||||||| ||||| | | ||| |||||||||| | ||||
Sbjct 261 AGTCATACTTCAACGTGCTTCAAGGATTTTTGTTAC-ATTGTCATGGAAGCA-TGGTTGG 318
Query 294 TG-CTGGACCTACGCTTTCTTCAAT-CATACATGTTTCTGTTAAGCAAATTGTTGATTCT 351
|| | ||| |||| |||||||| || |||||| | |||| ||||||||||||||||||
Sbjct 319 TGCCGGGA-CTACACTTTCTTC-ATCCATACACGCCTCTGCGAAGCAAATTGTTGATTCT 376
Query 352 AGCTTCAGATTGTTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAA-GGATAA 410
|||||||||||||||||||||||||| || |||||||||||||| |||| ||| ||| |
Sbjct 377 AGCTTCAGATTGTTGCAGGGTTCTGTGTCCCTATACGAGGGATCATATGGGAATGGA-AG 435
Query 411 GAAGCCGTCTATTCCGCAGCTCT-CGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGA 469
||||||||| ||||||||||| | | |||| || ||||||||||| |||| ||| ||||
Sbjct 436 GAAGCCGTCGATTCCGCAGCT-TGCTGGAGCAGTGTGGGAAGCATGCTCCAATTTAAAGA 494
Query 470 AGGTTCCTGCAACAAACATTACTGCGATTGGT-AGAGCTATTACACAGGTTGCGGTTTCC 528
|||| |||| ||||||||| | |||||| || || || ||| |||| || || ||||||
Sbjct 495 AGGTGCCTGAAACAAACATCAAAGCGATT-GTAAGGGCGATTGCACATGTAGCTGTTTCC 553
Query 529 ATGAAGGATGTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGT 588
|||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || |
Sbjct 554 ATGAAGGATGTTCTTAGGGAGATGAAAGAACTGAAGCCAGCTTGTTCTTCACCCGAGCAT 613
Query 589 GAGGCATCTGGTGA--T--AATAT-GT--CT-AG---tgatgatgatgatgatgaCGATT 637
|| || |||| | | || | | || | | | ||||| |||||||| | ||
Sbjct 614 GATGCTTCTGAAAACCTGGAA-AGCGAGACTCAAAACTCA-GATGAAGATGATGATGGTT 671
Query 638 TAGGCGATGATTTGTCTCCTGAAGAAATGGAAGTTGCTACAATGGTTACT-GAGATTGTC 696
|||||||||| ||||||||||||||| | |||||||||| |||||| | | || |||||
Sbjct 672 TAGGCGATGACTTGTCTCCTGAAGAATTTGAAGTTGCTAAAATGGT-AGTAGATATTGTG 730
Query 697 TCTGAAACTATCATGGTGATAAAAGAACTCATTCGAG-TTATCACTGGTATGATTAAGAT 755
||||| || || |||| |||||||| || || || | || |||| || ||||| ||| |
Sbjct 731 TCTGAGACGCTCGTGGTTATAAAAGAGCTTATCCGTGCTT-TCACAGGCATGATCAAGCT 789
Query 756 GGAGAATCCAAAGGATAATAGTGGGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGTG 815
|||||||||||| |||||||||| ||||||||| || ||||||||| |||||||| ||||
Sbjct 790 GGAGAATCCAAATGATAATAGTGAGTTTGTGGACTCTCTTGAGAAGTTACTGAAGTTGTG 849
Query 816 TCAAGGAACTGGTGTACAAATCGATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGAT 875
|||||| | ||| ||||| || ||||||||||| || ||||| ||||||||||| ||| |
Sbjct 850 TCAAGGCATTGGAGTACAGATTGATGAGCTTGGAGCCTGTGTTTATCCACCGCAAGAGTT 909
Query 876 -GAACAAGATGAAGCAAACAGTGAAGGTTATACAGGGAAATCTA--GACGA-ATTTGAAA 931
| | ||||| ||||||||| || ||| |||||| ||| | || ||| || |
Sbjct 910 TGGTCTC-ATGAAACAAACAGTGGAGAAAATAT-GGGAAA-CTATTGGTGAGATT-GAGA 965
Query 932 CTGAAGTTGAGCGTTT-GAAGAGTTCTTCA---GACGGCTTT-TCGGGAGCTTGCGGGAA 986
||| ||| || |||| || || ||||||| || | |||| |||||| | ||| | ||
Sbjct 966 CTGGTGTTAAGAGTTTCGA-GAATTCTTCATCAGAAG-CTTTATCGGGATCATGCAG-AA 1022
Query 987 G-CTGC-GAAACTCCTTGAAACATATGGAAACTGAATTGGATAAAAGA-TGTGAAGCTGA 1043
| |||| | | ||||| ||||||||||| || ||| | |||| | ||||||||
Sbjct 1023 GGCTGCAGGGTTTGATTGAA-CATATGGAAACCGAGCTGGGCACAAGAATA-GAAGCTGA 1080
Query 1044 GCTAGTAGTT-G-AAA-TGCAGAATGTTACTCTTGA-CAGTTAG 1083
||||||| | ||| |||||||||||| |||| | || ||||
Sbjct 1081 ---AGTAGTTTGCAAAATGCAGAATGTTAATCTTTAGCACTTAG 1121
> Ahg912154 jgi|Araly1|912154|Al_scaffold_0001_2408
Length=957
Score = 449 bits (243), Expect = 2e-125
Identities = 368/427 (86%), Gaps = 14/427 (3%)
Strand=Plus/Plus
Query 184 ATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTCTTAC 243
|||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 1 ATGCTATGGACTGGAGAATCTCCAAAAGCTGAATCACTTACGGAGACAATGGAGTCTTAC 60
Query 244 TTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGGACCT 303
|||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTCAATGCTCTTCATGGGTTTTTGCTCTGTTTCCATGGAAGCACTCTTGGTGCTGGACCT 120
Query 304 ACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAGATTG 363
|| || ||||||||||| || | ||||||||||||||| |||||||| ||||||||||||
Sbjct 121 ACTCTGTCTTCAATCATCCACGGTTCTGTTAAGCAAATCGTTGATTCCAGCTTCAGATTG 180
Query 364 TTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAA-GG-ATAAGAAGCCGTCTA 421
|| ||||||||||| || || ||||||||||| ||||| || || | || ||||||||||
Sbjct 181 TTTCAGGGTTCTGTCTCCCTTTACGAGGGATCATATGAAAAAGGCA-AA-AAGCCGTCTA 238
Query 422 TTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATG-TTCCAGTTTCAAGAAGGTTCCTGCA 480
|||||||||| || |||| |||| ||| ||||| || |||||||||||| | ||| |
Sbjct 239 TTCCGCAGCTTTCAGGAGCAGTTTCGGAGGCATGCTTT-AGTTTCAAGAAGATGCCTATA 297
Query 481 ACAAACATTA-CTGCGATTGGTAGA-GCTATTACACAGGTTGCGGTT-TCCATGAAGGAT 537
|||||| || | |||||||| | | |||||| | |||||||| ||| || || ||||||
Sbjct 298 ACAAACCTTGTC-GCGATTGGCA-ATGCTATTTCGCAGGTTGCTGTTATC-ATAAAGGAT 354
Query 538 GTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTT-ATCTGAATGTGAGGCATC 596
||||||| ||||||||| ||||||||||||| |||||||| | ||| |||||||||||
Sbjct 355 GTTCTTAATGAGATGAAAAAAGTGAAGCCAGCTTGTCCTTTGAG-TGAGTGTGAGGCATC 413
Query 597 TGGTGAT 603
|||||||
Sbjct 414 TGGTGAT 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5