BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22970.1 Length=1207 Score E Sequences producing significant alignments: (Bits) Value Ahg472548 jgi|Araly1|472548|fgenesh2_kg.1__2502__AT1G22970.1 1611 0.0 Ahg476247 jgi|Araly1|476247|fgenesh2_kg.2__1377__AT1G71150.1 628 2e-179 Ahg912154 jgi|Araly1|912154|Al_scaffold_0001_2408 449 2e-125 > Ahg472548 jgi|Araly1|472548|fgenesh2_kg.1__2502__AT1G22970.1 Length=1201 Score = 1611 bits (872), Expect = 0.0 Identities = 1087/1189 (91%), Gaps = 22/1189 (2%) Strand=Plus/Plus Query 1 AAGACAAAAATGGTGAAAACAAAGAAAGAAGATCTAAATCAATTTCTGATTCCTCGTCTC 60 |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1 AAGACAAAAATGGTGAAATCAAAGAAAGAAGATCTAAATCAATTTCTAATTCCTCGTCTT 60 Query 61 AACACCATCTACGAAACCCTCCAGTTGTTCGATGGAACAGCTTCTCCTACAGTGGA-AAG 119 |||||||||||||| || || |||||||||||| |||||||||||||||||||||| || Sbjct 61 AACACCATCTACGATACTCTACAGTTGTTCGATCGAACAGCTTCTCCTACAGTGGAGAA- 119 Query 120 AGTTAATTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGT 179 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 120 AGTTAATTGGAACGATGTTCTCCAGATGTCTGATCACCTCTCTAAACAAGCCACCATAGT 179 Query 180 GGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTC 239 ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 180 GGGAATGCTATGGACTGGAGAATCTCCTAAAGCTGAATCACTTAAAGAGACAATGGAGTC 239 Query 240 TTACTTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGG 299 |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 240 TTACTTCAATGCTCTTCAAGGGTTTTTGCTCTGTTGCCATGGAAGCACAGTTGGTGCTGG 299 Query 300 ACCTACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAG 359 |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct 300 ACCTACACTTTCTTCAATCATACATGTTTCTGTTAAGCAAATCGTTGATTCCAGCTTTAG 359 Query 360 ATTGTTGCAGGGTTCTGTTTCTCT-ATACGAGGGATCGTATGAGAAGGATAAGAAGCCGT 418 |||||||||||||||||| || || |||||||||||| |||||||||||||||||||||| Sbjct 360 ATTGTTGCAGGGTTCTGTCTC-CTTATACGAGGGATCATATGAGAAGGATAAGAAGCCGT 418 Query 419 CTATTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGAAGGTTCCTG 478 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 419 CTATTCCGCAGCTTTCGGGAGTGGTTTGGGAGGCATGCTCCAGTTTCAAGAAGGTTCCTG 478 Query 479 CAACAAACATTACTGCGATTGGTAGAGCTATTACACAGGTTGCGGTTTCCATGAAGGATG 538 ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 479 CAACAAACATTGTTGCGATTGGTAGGGCTATTACACAGGTTGCAGTTTCCATGAAGGATG 538 Query 539 TTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGTGAGGCATCTG 598 ||||||||||||||||||||||||||||||| |||| || | |||||||||||||||||| Sbjct 539 TTCTTAGGGAGATGAAAGAAGTGAAGCCAGCTTGTCATTCAGCTGAATGTGAGGCATCTG 598 Query 599 GTGATAATATGTCTAGtgatgatgatgatgatgaCGATTTAGGCGATGATTTGTCTCCTG 658 ||||||||||||| | | | ||||||||||||||||||||||||||||||||||| || Sbjct 599 GTGATAATATGTC--G-G--G-TGATGATGATGACGATTTAGGCGATGATTTGTCTCTTG 652 Query 659 AAGAAATGGAAGTTGCTACAATGGTTACTGAGATTGTCTCTGAAACTATCATGGTGATAA 718 |||||||||||||||||| |||||| ||| ||||| ||||| || ||||||||||||| Sbjct 653 AAGAAATGGAAGTTGCTAGGATGGTTGTTGATATTGTGTCTGAGACGATCATGGTGATAA 712 Query 719 AAGAACTCATTCGAGTTATCACTGGTATGATTAAGATGGAGAATCCAAAGGATAATAGTG 778 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | Sbjct 713 AAGAACTCATTCGAGTTATCACTGGCATGATTAAGATGGAGAATCCAAATGATAATAGCG 772 Query 779 GGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGTGTCAAGGAACTGGTGTACAAATCG 838 ||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||||| Sbjct 773 GGTTTGTGGAGTCACTTGAGAAGCTACTGAAGTTGTGTCAAGGAACCGGAGTACAAATCG 832 Query 839 ATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGATGAACAAGATGAAGCAAACAGTGA 898 |||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || | Sbjct 833 ATGAGCTTGGAGCTTGCGTCTATCCACCGCAGGAGATGGACAAAATGAAGCAAACGGTAA 892 Query 899 AGGTTATACAGGGAAATCTAGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTT 958 || | ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 893 AGATAATAAAGGGGAATCTCGACGAATTTGAAACTGAAGTTGAGCGTTTGAAGAGTTCTT 952 Query 959 CAGACGGCTTTTCGGGAGCTTGCGGGAAGCTGCGAAACTCCTTGAAACATATGGAAACTG 1018 ||||||||| ||||||||||||||| |||||| ||||||| |||||||| ||||||| || Sbjct 953 CAGACGGCTGTTCGGGAGCTTGCGGAAAGCTGAGAAACTCGTTGAAACACATGGAAATTG 1012 Query 1019 AATTGGATAAAAGATGTGAAGCTGAGCTAGTAGTTGAAATGCAGAATGTTACTCTTGACA 1078 |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| || Sbjct 1013 AATTGGGTAAAAGATGTGAAGCAGAGCTAGTCGTTGAAATGCAGAATGTTACTCTTGGCA 1072 Query 1079 GTTAG------TTTGGATTTTGCAATTGAGttttttttCGGTTTGTTTCAGT-GGCTTGT 1131 |||| ||||||||||||||||||||||||||| |||||||||| || || || Sbjct 1073 ATTAGAAAGAGTTTGGATTTTGCAATTGAGTTTTTTTTTGGTTTGTTTCTGTCGGAAAGT 1132 Query 1132 GTCTTGTAG--TA-A-CATTCATCTAATGTTCAATGTGTTGTACACGTT 1176 | ||||| | | | ||||||| ||||||||||||||||| | ||||| Sbjct 1133 GGCTTGT-GCCTTTAGCATTCATGTAATGTTCAATGTGTTGCATACGTT 1180 > Ahg476247 jgi|Araly1|476247|fgenesh2_kg.2__1377__AT1G71150.1 Length=1156 Score = 628 bits (340), Expect = 2e-179 Identities = 834/1064 (78%), Gaps = 67/1064 (6%) Strand=Plus/Plus Query 60 CAACACCATCTACGAAACCCTCCAGTTGTTCGATGGAA-CAGCTTCTCCTACAGTGGA-A 117 ||| |||||| | || || ||||||||||| || | || | ||||| ||| || | Sbjct 85 CAATACCATCAATGATACTCTCCAGTTGTTTGA-GCAAGTTCCGTCTCCGACACAAGACA 143 Query 118 AGAGTTAA-TTGGAACGATGTTCTTCAGATGTCTGATCACCTCTCTAAACAAGCCACCAT 176 | | |||| ||||||||||| |||||||| |||||||| ||||| |||||||| || || Sbjct 144 A-A-TTAAGCTGGAACGATGTCCTTCAGATTTCTGATCATCTCTCCAAACAAGCTACTAT 201 Query 177 AGTGGGAATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAA-GAGACTATGG 235 ||||||||||||||||||||||||| |||||||| |||| ||| |||| || ||||||| Sbjct 202 AGTGGGAATGCTATGGACTGGAGAACCTCCAAAATCTGAAGCAC-TAAAGGAAACTATGG 260 Query 236 AGTCTTACTTCAATGCCCTTCAAGGGTTTTTACT-CTGTTGCCATGGAAGCACT-CTTGG 293 |||| |||||||| | |||||||| ||||| | | ||| |||||||||| | |||| Sbjct 261 AGTCATACTTCAACGTGCTTCAAGGATTTTTGTTAC-ATTGTCATGGAAGCA-TGGTTGG 318 Query 294 TG-CTGGACCTACGCTTTCTTCAAT-CATACATGTTTCTGTTAAGCAAATTGTTGATTCT 351 || | ||| |||| |||||||| || |||||| | |||| |||||||||||||||||| Sbjct 319 TGCCGGGA-CTACACTTTCTTC-ATCCATACACGCCTCTGCGAAGCAAATTGTTGATTCT 376 Query 352 AGCTTCAGATTGTTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAA-GGATAA 410 |||||||||||||||||||||||||| || |||||||||||||| |||| ||| ||| | Sbjct 377 AGCTTCAGATTGTTGCAGGGTTCTGTGTCCCTATACGAGGGATCATATGGGAATGGA-AG 435 Query 411 GAAGCCGTCTATTCCGCAGCTCT-CGGGAGTGGTTTGGGAAGCATGTTCCAGTTTCAAGA 469 ||||||||| ||||||||||| | | |||| || ||||||||||| |||| ||| |||| Sbjct 436 GAAGCCGTCGATTCCGCAGCT-TGCTGGAGCAGTGTGGGAAGCATGCTCCAATTTAAAGA 494 Query 470 AGGTTCCTGCAACAAACATTACTGCGATTGGT-AGAGCTATTACACAGGTTGCGGTTTCC 528 |||| |||| ||||||||| | |||||| || || || ||| |||| || || |||||| Sbjct 495 AGGTGCCTGAAACAAACATCAAAGCGATT-GTAAGGGCGATTGCACATGTAGCTGTTTCC 553 Query 529 ATGAAGGATGTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTTATCTGAATGT 588 |||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || | Sbjct 554 ATGAAGGATGTTCTTAGGGAGATGAAAGAACTGAAGCCAGCTTGTTCTTCACCCGAGCAT 613 Query 589 GAGGCATCTGGTGA--T--AATAT-GT--CT-AG---tgatgatgatgatgatgaCGATT 637 || || |||| | | || | | || | | | ||||| |||||||| | || Sbjct 614 GATGCTTCTGAAAACCTGGAA-AGCGAGACTCAAAACTCA-GATGAAGATGATGATGGTT 671 Query 638 TAGGCGATGATTTGTCTCCTGAAGAAATGGAAGTTGCTACAATGGTTACT-GAGATTGTC 696 |||||||||| ||||||||||||||| | |||||||||| |||||| | | || ||||| Sbjct 672 TAGGCGATGACTTGTCTCCTGAAGAATTTGAAGTTGCTAAAATGGT-AGTAGATATTGTG 730 Query 697 TCTGAAACTATCATGGTGATAAAAGAACTCATTCGAG-TTATCACTGGTATGATTAAGAT 755 ||||| || || |||| |||||||| || || || | || |||| || ||||| ||| | Sbjct 731 TCTGAGACGCTCGTGGTTATAAAAGAGCTTATCCGTGCTT-TCACAGGCATGATCAAGCT 789 Query 756 GGAGAATCCAAAGGATAATAGTGGGTTTGTGGAGTCGCTTGAGAAGCTACTGAAGCTGTG 815 |||||||||||| |||||||||| ||||||||| || ||||||||| |||||||| |||| Sbjct 790 GGAGAATCCAAATGATAATAGTGAGTTTGTGGACTCTCTTGAGAAGTTACTGAAGTTGTG 849 Query 816 TCAAGGAACTGGTGTACAAATCGATGAGCTTGGTGCTTGTGTCTATCCACCGCAGGAGAT 875 |||||| | ||| ||||| || ||||||||||| || ||||| ||||||||||| ||| | Sbjct 850 TCAAGGCATTGGAGTACAGATTGATGAGCTTGGAGCCTGTGTTTATCCACCGCAAGAGTT 909 Query 876 -GAACAAGATGAAGCAAACAGTGAAGGTTATACAGGGAAATCTA--GACGA-ATTTGAAA 931 | | ||||| ||||||||| || ||| |||||| ||| | || ||| || | Sbjct 910 TGGTCTC-ATGAAACAAACAGTGGAGAAAATAT-GGGAAA-CTATTGGTGAGATT-GAGA 965 Query 932 CTGAAGTTGAGCGTTT-GAAGAGTTCTTCA---GACGGCTTT-TCGGGAGCTTGCGGGAA 986 ||| ||| || |||| || || ||||||| || | |||| |||||| | ||| | || Sbjct 966 CTGGTGTTAAGAGTTTCGA-GAATTCTTCATCAGAAG-CTTTATCGGGATCATGCAG-AA 1022 Query 987 G-CTGC-GAAACTCCTTGAAACATATGGAAACTGAATTGGATAAAAGA-TGTGAAGCTGA 1043 | |||| | | ||||| ||||||||||| || ||| | |||| | |||||||| Sbjct 1023 GGCTGCAGGGTTTGATTGAA-CATATGGAAACCGAGCTGGGCACAAGAATA-GAAGCTGA 1080 Query 1044 GCTAGTAGTT-G-AAA-TGCAGAATGTTACTCTTGA-CAGTTAG 1083 ||||||| | ||| |||||||||||| |||| | || |||| Sbjct 1081 ---AGTAGTTTGCAAAATGCAGAATGTTAATCTTTAGCACTTAG 1121 > Ahg912154 jgi|Araly1|912154|Al_scaffold_0001_2408 Length=957 Score = 449 bits (243), Expect = 2e-125 Identities = 368/427 (86%), Gaps = 14/427 (3%) Strand=Plus/Plus Query 184 ATGCTATGGACTGGAGAATCTCCAAAAGCTGATTCACTTAAAGAGACTATGGAGTCTTAC 243 |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| Sbjct 1 ATGCTATGGACTGGAGAATCTCCAAAAGCTGAATCACTTACGGAGACAATGGAGTCTTAC 60 Query 244 TTCAATGCCCTTCAAGGGTTTTTACTCTGTTGCCATGGAAGCACTCTTGGTGCTGGACCT 303 |||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 61 TTCAATGCTCTTCATGGGTTTTTGCTCTGTTTCCATGGAAGCACTCTTGGTGCTGGACCT 120 Query 304 ACGCTTTCTTCAATCATACATGTTTCTGTTAAGCAAATTGTTGATTCTAGCTTCAGATTG 363 || || ||||||||||| || | ||||||||||||||| |||||||| |||||||||||| Sbjct 121 ACTCTGTCTTCAATCATCCACGGTTCTGTTAAGCAAATCGTTGATTCCAGCTTCAGATTG 180 Query 364 TTGCAGGGTTCTGTTTCTCTATACGAGGGATCGTATGAGAA-GG-ATAAGAAGCCGTCTA 421 || ||||||||||| || || ||||||||||| ||||| || || | || |||||||||| Sbjct 181 TTTCAGGGTTCTGTCTCCCTTTACGAGGGATCATATGAAAAAGGCA-AA-AAGCCGTCTA 238 Query 422 TTCCGCAGCTCTCGGGAGTGGTTTGGGAAGCATG-TTCCAGTTTCAAGAAGGTTCCTGCA 480 |||||||||| || |||| |||| ||| ||||| || |||||||||||| | ||| | Sbjct 239 TTCCGCAGCTTTCAGGAGCAGTTTCGGAGGCATGCTTT-AGTTTCAAGAAGATGCCTATA 297 Query 481 ACAAACATTA-CTGCGATTGGTAGA-GCTATTACACAGGTTGCGGTT-TCCATGAAGGAT 537 |||||| || | |||||||| | | |||||| | |||||||| ||| || || |||||| Sbjct 298 ACAAACCTTGTC-GCGATTGGCA-ATGCTATTTCGCAGGTTGCTGTTATC-ATAAAGGAT 354 Query 538 GTTCTTAGGGAGATGAAAGAAGTGAAGCCAGCGTGTCCTTT-ATCTGAATGTGAGGCATC 596 ||||||| ||||||||| ||||||||||||| |||||||| | ||| ||||||||||| Sbjct 355 GTTCTTAATGAGATGAAAAAAGTGAAGCCAGCTTGTCCTTTGAG-TGAGTGTGAGGCATC 413 Query 597 TGGTGAT 603 ||||||| Sbjct 414 TGGTGAT 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45061287894 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5