BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22980.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912154 jgi|Araly1|912154|Al_scaffold_0001_2408 1208 0.0
> Ahg912154 jgi|Araly1|912154|Al_scaffold_0001_2408
Length=957
Score = 1208 bits (654), Expect = 0.0
Identities = 812/889 (91%), Gaps = 8/889 (1%)
Strand=Plus/Plus
Query 362 GCTATGGACTGGAGAAACTCCAAAAGCTGAATCAGTTAAGGAGACAATGGAGTCTTACTT 421
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 3 GCTATGGACTGGAGAATCTCCAAAAGCTGAATCACTTACGGAGACAATGGAGTCTTACTT 62
Query 422 CAAGGCTCTTCTA-GGGTTTTTGCTCTGTTGT-CATGGAAGCACTCTTGGTGCTGGTCCT 479
||| ||||||| | |||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 63 CAATGCTCTTC-ATGGGTTTTTGCTCTGTT-TCCATGGAAGCACTCTTGGTGCTGGACCT 120
Query 480 ACTTTGTCTTCAATCGTACACGGTTCTGTTAAGCAAATCGTTGACTCCAGCTTCAGATTG 539
||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ACTCTGTCTTCAATCATCCACGGTTCTGTTAAGCAAATCGTTGATTCCAGCTTCAGATTG 180
Query 540 TTTCAGGGTTCTGTATCTCTTTACGATGGATCATATGAAAAGGGGGAAAAGCCGTCTATT 599
|||||||||||||| || |||||||| |||||||||||||| || ||||||||||||||
Sbjct 181 TTTCAGGGTTCTGTCTCCCTTTACGAGGGATCATATGAAAAAGGCAAAAAGCCGTCTATT 240
Query 600 TCGCAGCTTTCAGGAGCAGTTTTGGAGGCATGCTCTAGTTTCAAGAAGGTTCCTACAACA 659
||||||||||||||||||||| ||||||||||| ||||||||||||| | |||| ||||
Sbjct 241 CCGCAGCTTTCAGGAGCAGTTTCGGAGGCATGCTTTAGTTTCAAGAAGATGCCTATAACA 300
Query 660 AACCTCATCGCGATTGGCAGTGCTATTTCTCAGGTTTCGGTTATCATGAAGGATGTTCTT 719
||||| |||||||||||| ||||||||| |||||| | |||||||| ||||||||||||
Sbjct 301 AACCTTGTCGCGATTGGCAATGCTATTTCGCAGGTTGCTGTTATCATAAAGGATGTTCTT 360
Query 720 AATGAGATGAAAAAAGTGAAACCAGCTTGTCCTTCAAGTGAGGGTGAGGCATCTGGTGAT 779
|||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 361 AATGAGATGAAAAAAGTGAAGCCAGCTTGTCCTTTGAGTGAGTGTGAGGCATCTGGTGAT 420
Query 780 GATTTTTCTCCTGAGCAAATAGAAGTTGCTAAAATGGTTGCTGACATTGTGTATGAGGCG 839
|||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 421 GATTTTTCTCCTAAGCAAATAGAAGTTGCTAAAATGGTGGCTGACATTGCGTCTGAGGCG 480
Query 840 ATGACGGTAATAATAGTCATTCGAGTAATCACCAGGATGATGGAGAAGGAGA-ATTCAAA 898
|||| ||| |||||||||||||||||||||||||||| |||||| |||| | || ||||
Sbjct 481 ATGATGGTGATAATAGTCATTCGAGTAATCACCAGGACAATGGAGGAGGA-ACATCCAAA 539
Query 899 TGAGAATAGCGTGTTTGTGGAGTCGCTAGAGAAGCTACTTAAGTTGTGTCAAAGAAGTGG 958
|| ||||||| ||||||||| ||||||||||||||||| ||| |||||||||||| |||
Sbjct 540 GGAAAATAGCGGGTTTGTGGACTCGCTAGAGAAGCTACTAAAGCTGTGTCAAAGAACTGG 599
Query 959 AGTAGTGATAGAAGAGCTTGGTACTTGCGTTTATCATCCACCGCTGAAGATAGACAAGAT 1018
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTACTGATAGAAGAGCTTGGAACTTGCGTTTATCATCCACCGCTGAAGATAGACAAGAT 659
Query 1019 AACTCAAACGGTGAAGATACTAGAGGGAAATCTCGATGAAGTTGAGGCTCAAGTTGAGTA 1078
| ||||||||||||| ||||||||||||| || ||||||||| |||||||||||||| |
Sbjct 660 GATTCAAACGGTGAAGGTACTAGAGGGAAACCTTGATGAAGTTAAGGCTCAAGTTGAGCA 719
Query 1079 TATGAAGAGGTCTTCCAACGCCTTT-CCGGGAGTTTGCAGAAAGCTGCGAGACGCGATCA 1137
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 720 TATGAAGAGGTCTTCCAACG-CTTTCCCGGGAGTTTGCAGAAAGCTGCGAGACGCGATCA 778
Query 1138 AACTCATGGAAGTTGGATTGGAAAAAAGAAAGGATTTGAATCAAATTCTGATTTCTCGTC 1197
||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||| ||
Sbjct 779 AACTCATGGAAGTTGAATTGGACAAAAGAAAGCATCTGAATCAAATTCTGATTTCTCATC 838
Query 1198 AAAACACTCTCTACAATGCTCTCCAGTTGTTGGATCCAACAGCTTCTCC 1246
|||| ||| |||||||| |||| |||||||| ||||||||||| |||||
Sbjct 839 AAAAGACTATCTACAATACTCTTCAGTTGTTCGATCCAACAGCGTCTCC 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5