BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22985.1 Length=708 Score E Sequences producing significant alignments: (Bits) Value Ahg472549 jgi|Araly1|472549|fgenesh2_kg.1__2503__AT1G22985.1 562 1e-159 > Ahg472549 jgi|Araly1|472549|fgenesh2_kg.1__2503__AT1G22985.1 Length=544 Score = 562 bits (304), Expect = 1e-159 Identities = 455/521 (87%), Gaps = 37/521 (7%) Strand=Plus/Plus Query 131 GGAAGCAACCGATTCTTCAAGCAGCGAAGACGAGTCACCACCGTCATCACGCCGTCGAGG 190 ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| Sbjct 3 GGAAGCAACCGATTCTTCAAGCAGCGAAGACGAATCACCGCCG---TCACGCCGTCGAGG 59 Query 191 TAAGAAGCTAGTCAAGGAAATCGTAATCGATCATTCTGATCCCCCGGAGGTCGGAAAAAC 250 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 60 TAAGAAGCTAGTCAAGGAAATCGTCATCGATCCTTCTGATCCCCCGGAGGTCGGAAAAAC 119 Query 251 TCGGTTCAAAATCAGGATTCCGGCGA-GTTTACTTGCTGCGAGGAATACGACGGCGAATA 309 |||||| ||||||||||||||||||| || | |||||| ||| || ||| | |||||| Sbjct 120 TCGGTTTAAAATCAGGATTCCGGCGAGGTAT-CTTGCTCCGAAGACTAC-A--ACGAATA 175 Query 310 AGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATTAGAT 369 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 176 AGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATCAGAT 235 Query 370 GTGGTAGAG-T--------T---AAAGGAAGACCTGAACGAATTTGGCTTGGAACTTTTG 417 ||||||||| | | |||||||||||| |||| |||||||||| ||||||| Sbjct 236 GTGGTAGAGCTCACGGCGGTGGTAAAGGAAGACCTCAACGTGTTTGGCTTGGGACTTTTG 295 Query 418 AAACAGCTGAAGAAGCTGCTCTTGCTTATGATAACGCTGCGATTCAG-TTGATTGGACCT 476 ||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||||| Sbjct 296 AAACAGCTGAAGAAGCTGCTCTTGCTTATGACAACGCTGCCATTCAGCTT-ATTGGACCT 354 Query 477 GATGCGCCGACTAATTTTGGCCGTCCTGATGTTGATTCTGCGGTGGTGAAAAAGCAAGAT 536 ||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||| Sbjct 355 GATGCTCCGACTAATTTTCGCCGTCCTGATGTTGATTCTCCGGTGGTGAA---GCAAGAT 411 Query 537 TCTGATGCTAGTGGTGGT---GC---TTCTGAAGAAGTTGTTTGATTTTCTTG-TTTATA 589 || |||||| |||||| | || || || |||| ||||||||||||||| ||| || Sbjct 412 TCCGATGCTGGTGGTGCTTCTGCAGCTTGTGGTGAAGATGTTTGATTTTCTTGGTTT-TA 470 Query 590 ACTAACTTTGCAAGGTTACTTTTGTTTATCATCAT-CTTTT 629 |||||||| |||||||||||||| | |||||| | ||||| Sbjct 471 ACTAACTT-GCAAGGTTACTTTT-TG-ATCATCTTGCTTTT 508 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26037952311 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5