BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22985.1

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472549 jgi|Araly1|472549|fgenesh2_kg.1__2503__AT1G22985.1         562    1e-159


> Ahg472549 jgi|Araly1|472549|fgenesh2_kg.1__2503__AT1G22985.1
Length=544

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 455/521 (87%), Gaps = 37/521 (7%)
 Strand=Plus/Plus

Query  131  GGAAGCAACCGATTCTTCAAGCAGCGAAGACGAGTCACCACCGTCATCACGCCGTCGAGG  190
            ||||||||||||||||||||||||||||||||| ||||| |||   ||||||||||||||
Sbjct  3    GGAAGCAACCGATTCTTCAAGCAGCGAAGACGAATCACCGCCG---TCACGCCGTCGAGG  59

Query  191  TAAGAAGCTAGTCAAGGAAATCGTAATCGATCATTCTGATCCCCCGGAGGTCGGAAAAAC  250
            |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct  60   TAAGAAGCTAGTCAAGGAAATCGTCATCGATCCTTCTGATCCCCCGGAGGTCGGAAAAAC  119

Query  251  TCGGTTCAAAATCAGGATTCCGGCGA-GTTTACTTGCTGCGAGGAATACGACGGCGAATA  309
            |||||| ||||||||||||||||||| || | |||||| ||| || ||| |   ||||||
Sbjct  120  TCGGTTTAAAATCAGGATTCCGGCGAGGTAT-CTTGCTCCGAAGACTAC-A--ACGAATA  175

Query  310  AGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATTAGAT  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  176  AGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATCAGAT  235

Query  370  GTGGTAGAG-T--------T---AAAGGAAGACCTGAACGAATTTGGCTTGGAACTTTTG  417
            ||||||||| |        |   |||||||||||| ||||  |||||||||| |||||||
Sbjct  236  GTGGTAGAGCTCACGGCGGTGGTAAAGGAAGACCTCAACGTGTTTGGCTTGGGACTTTTG  295

Query  418  AAACAGCTGAAGAAGCTGCTCTTGCTTATGATAACGCTGCGATTCAG-TTGATTGGACCT  476
            ||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||
Sbjct  296  AAACAGCTGAAGAAGCTGCTCTTGCTTATGACAACGCTGCCATTCAGCTT-ATTGGACCT  354

Query  477  GATGCGCCGACTAATTTTGGCCGTCCTGATGTTGATTCTGCGGTGGTGAAAAAGCAAGAT  536
            ||||| |||||||||||| |||||||||||||||||||| ||||||||||   |||||||
Sbjct  355  GATGCTCCGACTAATTTTCGCCGTCCTGATGTTGATTCTCCGGTGGTGAA---GCAAGAT  411

Query  537  TCTGATGCTAGTGGTGGT---GC---TTCTGAAGAAGTTGTTTGATTTTCTTG-TTTATA  589
            || |||||| |||||| |   ||   || ||  |||| ||||||||||||||| ||| ||
Sbjct  412  TCCGATGCTGGTGGTGCTTCTGCAGCTTGTGGTGAAGATGTTTGATTTTCTTGGTTT-TA  470

Query  590  ACTAACTTTGCAAGGTTACTTTTGTTTATCATCAT-CTTTT  629
            |||||||| |||||||||||||| |  |||||| | |||||
Sbjct  471  ACTAACTT-GCAAGGTTACTTTT-TG-ATCATCTTGCTTTT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26037952311


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5