BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22990.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472550 jgi|Araly1|472550|fgenesh2_kg.1__2504__AT1G22990.1 852 0.0
> Ahg472550 jgi|Araly1|472550|fgenesh2_kg.1__2504__AT1G22990.1
Length=607
Score = 852 bits (461), Expect = 0.0
Identities = 561/608 (92%), Gaps = 11/608 (2%)
Strand=Plus/Plus
Query 57 ATGGGAGCTCTCAATTATCTTTCTGAGTATTTCTCTAACCATTTCTACGTCTCAATACGA 116
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1 ATGGGAGCTCTCGATTCTCTTTCTGAGTATTTCTCTAATCATTTCTACGTCTCAATAAGA 60
Query 117 AAACGGAAGAAACGTAAAGTCATGCAGACGGTGAATATTAAGGTGAAGATCGACTGTGAC 176
||||||| ||| |||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 AAACGGAGGAAGCGTAAACTCATGCAGACAGTGAATATAAAGGTGAAGATCGACTGTGAC 120
Query 177 GGATGCGAACGCAAAATCAAGAACGCTGTTTCCTCCATCAAAGGAGCAAAATCAGTGGAA 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGATGCGAACGCAAAATCAAGAACGCTGTTTCCTCCATGAAAGGAGCAAAATCAGTGGAA 180
Query 237 GTGAACAGAAAGATGCACAAAGTAACGGTGAGTGGCTACGTTGATCCCAAGAAAGTGCTG 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GTGAACAGAAAGATGCACAAAGTAACGGTGAGTGGCTACGTTGATCCAAAGAAAGTGCTG 240
Query 297 AAGACAGTGCAGAGCACTGGGAAAAAGAAAGCTGAGCTGTGGCCGTATGTTCCATACACA 356
|||| ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct 241 AAGAGAGTGCAGAGCACTGGCAAGAAGAAAGCTGAGCTGTGGCCGTACGTTCCGTACACA 300
Query 357 ATGGTGGCTTATCCATATGCCGCCGGAGCTTACGACAAGAGAGCCCCGCCGGGTTTTGTG 416
|||||||||||||| || || || |||||||||||||||| |||||| ||||| ||||||
Sbjct 301 ATGGTGGCTTATCCGTACGCTGCTGGAGCTTACGACAAGAAAGCCCCACCGGGGTTTGTG 360
Query 417 AGGAAGTCGGAGCAGGCTCAGGCGCAGCCGGGAAGTACTGACGATAAGCTCATGTCCCTC 476
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAAATCGGAGCACGCTCAGGCGCAGCCGGGAAGTACTGACGATAAGCTCATGTCCCTA 420
Query 477 TTTAGCGACGAGAACCCTAACGCCTGCACCGTTATGTGAATAA-GTATAGATAGCATG-- 533
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 421 TTTAGCGACGAGAACCCTAACGCCTGCACCGTTATGTGAATAAAGTATAGATAGCAAGTT 480
Query 534 AGC--C-GAT-GTT--ATAATTTGTAATGTATAACGTTTTATGAAGTTAAAGTACTGGAA 587
||| | ||| ||| |||||| ||||||||||||||||||| ||||| | || |||||
Sbjct 481 AGCAACCGATTGTTGTATAATTAGTAATGTATAACGTTTTATAAAGTTTA--TAGTGGAA 538
Query 588 CCTTTTTTGTTACTGTATTATGTGAGAAGCAACGCAACATATAGTAATTACTCTGCGTTT 647
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 539 TCTTTTTTGTTACTGTATTAAGTCAGAAGCAAATCAACATATAGTAATTACTCTGCGTTT 598
Query 648 AACTAGTA 655
||||||||
Sbjct 599 AACTAGTA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5