BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23000.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921327 jgi|Araly1|921327|scaffold_102608.1 1565 0.0
> Ahg921327 jgi|Araly1|921327|scaffold_102608.1
Length=1110
Score = 1565 bits (847), Expect = 0.0
Identities = 1037/1126 (92%), Gaps = 23/1126 (2%)
Strand=Plus/Plus
Query 189 TCTTATTCTTTCTTCTTAAGCCATGACTAAAGATGAAGACTTTAAGCTCCTAAAGATCCA 248
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTTCTTTCTTCTGAAGCCATGACTAAAGATGAAGACTTTAAGCTCCTAAAGATCCT 60
Query 249 GACGTTTTCACTCAGAGTCAACATTCACTGCGAGGGCTGTAACAAGAAAGTCAAGAAACT 308
||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 GACGTTTTCCCTCAGGGTCAACATCCATTGCGAGGGCTGTAACAAGAAAGTCAAGAAACT 120
Query 309 TCTTCAGAGGATCGAAGGAGTTTGCCACGTGAAGATAGAAGCAGAACATCAAAAGGTGAC 368
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TCTTCAGAGGATCGAAGGAGTTTGCCACGTGAAGATAGAAGCAGAGCATCAAAAGGTGAC 180
Query 369 TGTTTCAGGGTCAGTTGACTCAGCCACACTCATCAACAAGCTTGTTAAAGCCGGGAAACA 428
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 181 TGTTACAGGGTCAGTTGACTCAGCCACACTCATCAACAAGCTCGTTAAAGCCGGCAAATA 240
Query 429 CGCCGAGCTTTGGTCTCCTAACCCAAACCAAAACCAGCCTCAAAAGCCCAAGACTAACGA 488
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 241 CGCCGAGCTCTGGTCTCCTAACCCAAACCAAAACCAACCTCAAAAGCCCAAGACTAATGA 300
Query 489 CTTCATCAAGAACGTTAATCAAAAGGGTCAGAAGCAGGGGTCTGCCAAAAGTGGTATTGA 548
| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 301 CGTCATCAAGAACGTTAATCAAAAGGGTCAGAAGCAAGGCTCGGCCAAAAGTGGTATTGA 360
Query 549 AGCCTGTAAACCCAAGAACGGCCCTAAAGGTGCAGCCTTTGT-AGCTGAGGAAGATGGAG 607
|||||| || |||||||||||||||||||||||||||||||| | | || | || ||||
Sbjct 361 AGCCTGCAAGCCCAAGAACGGCCCTAAAGGTGCAGCCTTTGTCA-CGGACGTGGAAGGAG 419
Query 608 ATGGCAGTGAAGAGGAAGACGGAGATGTCCAGTTTCCTAAACCGGCGAATCAGCAGCAGC 667
| ||| | || || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 ACGGCGGCGAGGAAGAAGACGGAGAGGTCCAGTTTCCTAAACCGGCGAATCAGCAGCA-- 477
Query 668 AACAAAACGTCGTCAACGCCAAGAAAAACAGTGGAGGAGCTGCGATGAACAATGGAAACA 727
| || | |||||||||| |||||||||||| |||||||| | ||||||||||||||||||
Sbjct 478 A-CAGACCGTCGTCAACTCCAAGAAAAACAATGGAGGAGTTTCGATGAACAATGGAAACA 536
Query 728 ACGGAGTCAACGCAGCATCAAAGAAAGTCAACCAAAAACAGAGCAACCATAA-CCAGAAC 786
||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 537 ACGGAGTCAACGCCGCAACAAAGAAAGTCAACCAAAAACAGAGCAACCA-AATCCAGAAC 595
Query 787 ACTCAACAAGTAATGGCGGCTATGAGAATGAGAACCGCCGGGAAAATGAGCACTGGTGTT 846
||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 596 ACTCAACAAGTAATGGCGGCTATGAGAATGAGAACCGCCGGAAAAATGACCTCTGGTGTT 655
Query 847 GAAGCCAACGAGATTGGAGCTCTCATGGGTCTT-GCTGGCTTCAACGGCGCAACCAACGC 905
||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||
Sbjct 656 GAAACCAACGAGATTGGAGCTCTCATGGGT-TTAGCTGGCTTTAACGGCGCAACAAATGC 714
Query 906 AGTGAATCACCCTCCAAATGGGATTCAACAACAGCTTCAAGCTCCACCGTTAAACAACGT 965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGTGAATCACCCTCCAAATGGGATTCAACAACAGCTTCAAGCTCCACCGTTAAACAACGT 774
Query 966 CAACGGCGTCACTAATCACAACCTCACCAATAGTAATGGAGGCATGATGATGAACATGAA 1025
|| | | | | |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 775 CA-C----T-A--A-TCACAACCTCACCAATGGTAATGGAGGCTTGATGATGAACATGAA 825
Query 1026 TGGGTACAATAATCATCATCCAATGAACATGCAGAGTAGGCAAATGATGCATCAGCCTCA 1085
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TGGATACAACAATCATCATCCAATGAACATGCAGAGTAGGCAAATGATGCATCAGCCTCA 885
Query 1086 GCAAATGATGTACCAAAGATCATCTTTCGTTCCAGCATCAAGCAATGGGTATTATTACAA 1145
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 886 GCAAATGATGTATCAAAGATCATCCTTCGTTCCAGCATCAAGCAATGGGTATTATTACAA 945
Query 1146 TTATACCCCTAGTCCCTACAGTTATTATCCTTATTACCCTTACGCAAGTGATCAGTACCA 1205
||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| | ||
Sbjct 946 TTATACCCCTAATCCCTACAGTTATTATCCATATTACCCTTACCCAAGTGAGCAGCAACA 1005
Query 1206 ACAACAAAGTAGTCATTCACATGCAACAAACATGTCTAGTGAAGAAGAC-G--CTGGTAA 1262
||||||||||| |||||| |||||||||||||||||||||| |||||| | || | ||
Sbjct 1006 GCAACAAAGTAGCCATTCATATGCAACAAACATGTCTAGTGATGAAGACAGTACTAGCAA 1065
Query 1263 TAACAATAGCTGCAACATCATGTAAAGTGTGGAT-GCTTGCTAAGG 1307
||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1066 TAACAATAGCTGCAACATCATGTAAAGTGTG-ATTGCTTGCTAAGG 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5