BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23020.2
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472552 jgi|Araly1|472552|fgenesh2_kg.1__2506__AT1G23020.1 3184 0.0
Ahg909813 jgi|Araly1|909813|Al_scaffold_0001_67 2115 0.0
> Ahg472552 jgi|Araly1|472552|fgenesh2_kg.1__2506__AT1G23020.1
Length=2189
Score = 3184 bits (1724), Expect = 0.0
Identities = 2040/2191 (93%), Gaps = 27/2191 (1%)
Strand=Plus/Plus
Query 80 GAGAAACGAATAAGAAAGTGATCAAGAATGTGATTAAGCTCTTAACGATGGTGATTTTGA 139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAGAAATGAATAAGAAAGTGATCAAGAATGTGATTAAGCTCTTAACGATGGTGATTTTGA 70
Query 140 TGGGCACTGTGGTGATTTGGATCATGATGCCAACGTCTACTTACAAGAAGATTTGGTTGA 199
|||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 71 TGGGTACTGTTGTGATTTGGATCATGATGCCAACGTCTACTTACAAGAAAATCTGGTTGA 130
Query 200 AATCCATGCGTGCCAAGCTCGGCAAATCGATTTATTTTGGGAAACCAGGAGTAAACCTTT 259
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 131 AATCCATGCGTGCCAAGCTCGGCAAATCGATTTACTATGGGAAACCAGGAGTGAACCTTT 190
Query 260 TGGTTTACATGTTCCCAATGATTCTACTGGCTTCTCTTGGATCTATTTACCTTCACTTGA 319
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 191 TGGTTTACATGTTCCCAATGATTCTACTGGCTTTTCTTGGATCTATTCACCTTCACTTGA 250
Query 320 AGAAACAAACGAGAGTAAACCAATTTAATA---GTAGAATGGATAGGAAGAAGATAGACA 376
|||||||||||| ||||||||||||||||| || || |||| |||||||||| ||| |
Sbjct 251 AGAAACAAACGACAGTAAACCAATTTAATAGTGGTGGAGTGGAGAGGAAGAAGAGAGATA 310
Query 377 AGTTTGGTGCATTGAAAAGACCAATGTTAGTGAAGGCCGGATTAGGGATAGTGACAGTGA 436
|||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 311 AGTTTGGTGCATTGAAAAGACCAATGTTAGTGAA-G--GGATTAGGAATAGTGACAGTGA 367
Query 437 CCGAGGTTATGTTCTTGATGATGTTCATGGCTCTTCTTCTTTGGAGCTTAGCCAATTACT 496
| || ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 368 CTGAAGTTATGTTCTTGACGATGTTCATGTCTCTTCTTCTTTGGAGTTTAGCCAATTACT 427
Query 497 TTTACCATACCTTTGTCACCATCACTCCTCAATCACTTCCAACCGACGGAGATAACTTAT 556
||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 428 TTTACTATACCTTTGTCACCATCACTCCTCAAACAATTCCAATCGACGGAGATAACTTAT 487
Query 557 GGCAAGCAAGGCTGGATTCAATAGCAGTAAGGTTAGGTCTAACAGGGAATATATGCTTGG 616
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 488 GGCAAGCGAGGCTGGATTCAATAGCAGTAAGGTTAGGTCTAACAGGGAACATATGCTTGG 547
Query 617 GGTTCTTATTTTATCCGGTGGCACGTGGCTCGTCGTTGCTGGCTGCAGTTGGGCTTACGT 676
||||||| || ||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 548 GGTTCTTGTTCTATCCGGTGTCGCGTGGCTCATCGTTGCTGGCTGCAGTTGGGCTTACGT 607
Query 677 CGGAGTCAAGCACCAAGTACCATATATGGCTCGGTAACTTGGTCATGACCTTATTCACAA 736
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 608 CGGAGTCAAGCACCAGGTACCATATATGGCTCGGTCACTTGGTCATGACCTTATTGACCA 667
Query 737 GCCACGGTCTTTGTTATTGTATCTATTGGATATCCACAAATCAAGTCTCTCAGATGTTGG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GCCACGGTCTTTGTTATTGTATCTATTGGATATCCACAAATCAAGTCTCTCAGATGTTGG 727
Query 797 AGTGGGATAGGACCGGTATCTCGCATTTAGCCGGAGAGATAGCTCTGGTGGCCGGACTTT 856
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 728 AGTGGGATAGGACCGGTATCTCGCATTTAGCCGGAGAAATAACTCTGGTGGCCGGGCTTG 787
Query 857 TGATGTGGGCCACCACATTCCCGGCGATTAGAAGGAGATTCTTCGAAGTCTTCTTCTATA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGATGTGGGCCACCACATTCCCGGCGATTAGAAGGAGATTCTTCGAAGTCTTCTTCTATA 847
Query 917 CTCACTATCTCTACATGGTCTTCATGCTCTTCTTTGTCTTCCACGTTGGCATCTCTTACG 976
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTCATTATCTCTACATTGTCTTCATGCTCTTCTTTGTCTTCCACGTTGGCATCTCTTACG 907
Query 977 CGTTGATCTCATTTCCCGGTTTCTACATCTTCATGGTCGATCGTTTCTTGAGATTTCTCC 1036
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 908 CGTTGATCTCATTTCCTGGTTTCTACATCTTCATCGTCGATCGTTTCTTGAGATTTCTCC 967
Query 1037 AGTCGCGGAACAATGTCAAGCTAGTCTCTGCTCGTGTTCTTCCTTGTGAAACTGTCGAGC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AGTCGCGGAACAATGTCAAGCTAGTCTCTGCTCGTGTTCTTCCTTGTGAAACTGTCGAGC 1027
Query 1097 TTAATTTCTCCAAAAACCCTATGCTGATGTATAGCCCGACGAGCATATTGTTCGTGAACA 1156
| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1028 TCAATTTCTCCAAAAGCCCTATGCTGATGTATAGCCCGACGAGTATATTATTCGTGAACA 1087
Query 1157 TACCGAGTATTTCGAAGCTTCAATGGCATCCATTTACGATAACTTCGAGTAGCAAACTCG 1216
|||||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||
Sbjct 1088 TACCGAGTATTTCGAAACTGCAATGGCATCCATTTACAATAATTTCGAGTAGCAAACTCG 1147
Query 1217 AACCAAAGAAGCTAAGTGTTATGATCAAGAGCCAAGGCAAATGGTCCAGTAAGCTTCACC 1276
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1148 AACCAAAAAAGCTAAGTGTTATGATCAAGAGCCAAGGCAAATGGTCCACTAAGCTTAACC 1207
Query 1277 ATATGCTTGCTTCTTCTAATCAGATCGACCACCTTGCTGTTTCCGTCGAGGGACCCTACG 1336
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1208 ATATGCTTGCTTATTCTGATCAGATCGACCACCTTGCTGTTTCCGTCGAGGGACCCTATG 1267
Query 1337 GCCCTGCTTCCACTGATTACCTACGACATGACTCTCTGGTTATGGTGAGTGGAGGCAGTG 1396
||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct 1268 GCCCTGCTTCCACCGATTACCTACGACATCAATCTCTGGTGATGGTGAGTGGAGGTAGTG 1327
Query 1397 GGATAACACCGTTCATCTCCATAATCCGCGACCTACTCTACGTGAGCTCAACGAACGCTT 1456
|||| |||||||||||||||||||| || |||||||||||||| |||||||||| |||||
Sbjct 1328 GGATTACACCGTTCATCTCCATAATTCGGGACCTACTCTACGTAAGCTCAACGAGCGCTT 1387
Query 1457 ACAAAACCCCCAAAATAACCTTAATATGCGCGTTCAAGAATTCTTCCGACCTCTCAATGC 1516
|||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1388 GTAAAATCCCCAAGATAACCTTAATATGCGCGTTCAAGACCTCTTCCGACCTCTCAATGC 1447
Query 1517 TCAACCTAATCTTACCGAACTCCACCGAGATCTCCTCCTTTATAGATATCCAGATCAAAG 1576
||||||||||||||||| |||||||||||| ||||||| | ||||||| ||||||||||
Sbjct 1448 TCAACCTAATCTTACCGGTCTCCACCGAGATATCCTCCTATGTAGATATTCAGATCAAAG 1507
Query 1577 CCTTTGTCACCCGAGAGAAAGTATCAACCTGCAATATGAATATCATCAAAACCCTCAGTT 1636
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1508 CCTTCGTCACCCGAGAGAAAGTATCAACTTGCAATATGAATATCATCAAAACCCTCTGTT 1567
Query 1637 TCAAACCATATGTC-TCAGACCAACCCATCTCACCAATCCTCGGACCG-AACTCCTGGCT 1694
|||||||| || || |||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 1568 TCAAACCACAT-TCCTCAGACCAACCCATCTCACCAATCCTTGGAC-GTAACTCCTGGCT 1625
Query 1695 GTGGCTGGCCACCATCCTCTCTTCTTCATTCATGATCTTTATAATCATCATCGCAATCAT 1754
||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 1626 ATGGCTCGCCACCATCCTCTCCTCTTCATTCGTGATCTTTATTATCATCATCGCAATCAT 1685
Query 1755 CTCAAGATATCACATTTACCCAATCGATCAAAGCTCGAAAGAGTACACTTCGGCTTATAC 1814
|||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1686 CTCAAGATATCACATTAACCCAATCGATCAAAGCTCGAAAAAGTACACTTCTGCTTATAC 1745
Query 1815 ATCTCTCATTTACCTTCTAGCAATCTCTATTAGCGTGGTGGCTACGTCTACGGTCGCTAT 1874
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1746 ATCTCTCATTTACCTTCTAGCAATCTCCATTAGCGTGGTGGCTACGTCTACGGTCGCTAT 1805
Query 1875 GTTGTGTAACAAAAAGAGTTATTTTAAGGGTTTAT-ATCAAAACGTTGACGC---ATTGT 1930
||||||||||||||||||||||| ||| | | |||||| | |||| |||||
Sbjct 1806 GTTGTGTAACAAAAAGAGTTATTATAACAAAA-AGGACCAAAACATCGACGATTTATTGT 1864
Query 1931 CTCCGTTGATGATCGAGAGCTCGCCAGATCAGTTGCTACCGGAATTCACCAACATTCATT 1990
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1865 CTCCGTTGATGATCGAGAGCTCGCCCGGTCAGTTGCTACCGGAATTCACCAACATTCATT 1924
Query 1991 ATGGAGAAAGGCCAAATCTTAACAAGCTCCTAGTTGGTTTAAAGGGTTCGAGCGTTGGAG 2050
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1925 ATGGAGAAAGACCTAATCTTAACAAGCTCCTAGTTGGTTTAAAGGGTTCGAGCGTCGGAG 1984
Query 2051 TTCTTGTGTGTGGTCCAAGGAAGATGAGAGAAGAGGTTGCAAAGATTTGTTCCTTTGGTT 2110
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1985 TTCTTGTGTGTGGTCCAAGGAAGATGAGAGAAGAGGTTGCAAAAATCTGTTCCTTTGGTT 2044
Query 2111 CGGCTGCGAATCTTCAATTTGAATCTATTAGTTTCAACTGGTGAGtttttttGATTGGTG 2170
|||||| ||||||||||||||||||||||||||| | ||||||| ||||||| ||| |
Sbjct 2045 CGGCTGAGAATCTTCAATTTGAATCTATTAGTTTTAGCTGGTGATTTTTTTT--TTG-TA 2101
Query 2171 -TAAAA--GAAAATT--C-CAATAAACAAAATAGTATCTACCAAAATCTTCTCACCAAAA 2224
||| | | ||||| | ||| ||| || | ||| |||||||||||||||||||||||
Sbjct 2102 ATAATATTGGAAATTTTCTCAA-AAAGAA--TCGTACCTACCAAAATCTTCTCACCAAAA 2158
Query 2225 GAAGTAAAGAGAGTCAACATCTTTCGAAATC 2255
|||||||||||| ||||||||||||||||||
Sbjct 2159 GAAGTAAAGAGAATCAACATCTTTCGAAATC 2189
> Ahg909813 jgi|Araly1|909813|Al_scaffold_0001_67
Length=2115
Score = 2115 bits (1145), Expect = 0.0
Identities = 1819/2134 (85%), Gaps = 88/2134 (4%)
Strand=Plus/Plus
Query 80 GAGAAACGAATAAGAAAGTGATC-AAGAATGTGATTAAGCTCTTAACGATGGTGATTTTG 138
|||||| ||||||| |||||| | |||| ||||||||| || |||| ||||||||||||
Sbjct 11 GAGAAATGAATAAGGAAGTGA-CTGAGAAGGTGATTAAGTTCGTAACAATGGTGATTTTG 69
Query 139 ATGGGCACTGTGGTGATTTGGATCATGATGCCAACGTCTACTTACAA-GAAGATTTGGTT 197
||||| ||| | ||||| ||||| ||||||||||| ||||| ||||| ||| || |||||
Sbjct 70 ATGGGGACTATAGTGATCTGGATTATGATGCCAACATCTACCTACAAGGAA-ATCTGGTT 128
Query 198 GAA-ATCCATGCGTGCCAAGCTCGGCAAATCGATTTATTTTGGGAAACCAGGAGTAAACC 256
|| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||
Sbjct 129 -AACCCCCATGCGTGCCAAGCTCGGCAAATCGATTTACTATGGGAAACCAGGAGTGAACC 187
Query 257 TTTTGGTTTACATGTTCCCAATGATTCTACTGGCTTCTCTTGGATCTATTTACCTTCACT 316
||||||||||||||||||| |||||||||||||||| ||| |||| ||| ||||||||||
Sbjct 188 TTTTGGTTTACATGTTCCCGATGATTCTACTGGCTTTTCTGGGATGTATCTACCTTCACT 247
Query 317 TGAAGAAACAAACGAGAGTAAACCAATTTAATAGTAGAATGGATAGGAAGAAGATAGACA 376
||||||||||||| | || || |||||||| || || ||| | |||||||| || ||
Sbjct 248 TGAAGAAACAAACAACTGTTAATCAATTTAACAGCGGAGTGG--A-GAAGAAGAGAGCCA 304
Query 377 AGTTTGGTGCATTGAAAAGACCAATGTTAGTGAA-GG-CCGGATTAGGGATAGTGACAGT 434
|||||||||| |||| |||||||||||||||||| || || |||||| |||||||||||
Sbjct 305 AGTTTGGTGCTTTGAGAAGACCAATGTTAGTGAAGGGACC--ATTAGGAATAGTGACAGT 362
Query 435 GACCGAGGTTATGTTCTTGATGATGTTCATGGCTCTTCTTCTTTGGAGCTTAGCCAATTA 494
||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 363 GACTGAGGTTATGTTCTTGACGATGTTCATGGCTCTTCTTCTTTGGAGCTTAACCAATTA 422
Query 495 CTTTTACCA-TACCTTTGTCACCATCACTCCTCAATCA-CTTCCAACCGACGGAGATAAC 552
| |||| || || ||||||||||||||| || ||||| | |||| |||||| |||||
Sbjct 423 CATTTA-CAGGACGTTTGTCACCATCACTTCTGAATCAGC-AGCAACTGACGGAAATAAC 480
Query 553 TTATGGCAAGCAAGGCTGGATTCAATAGCAGTAAGGTTAGGTCTAACAGGGAATATATGC 612
|||||||||| |||||||||| |||||||||| || ||||| || |||||| ||||||
Sbjct 481 CTATGGCAAGCGAGGCTGGATTTAATAGCAGTACGGCTAGGTATAGTAGGGAACATATGC 540
Query 613 TTGGGGTTCTTATTTTATCCGGTGGCACGTGGCTCGTCGTTGCTGGCTGCAGTTGGGCTT 672
|||| |||||| || ||||| ||||| | |||||||||||||||||||||||| ||||||
Sbjct 541 TTGGCGTTCTTGTTCTATCCAGTGGCTCCTGGCTCGTCGTTGCTGGCTGCAGTGGGGCTT 600
Query 673 ACGTCGGAGTCAAGCACCAAGTACCATATATGGCTCGGTA-ACTTGGTCATGACCTTATT 731
|||||||||||||||| |||||||||||||||||| || | |||||||||||| ||||||
Sbjct 601 ACGTCGGAGTCAAGCATCAAGTACCATATATGGCT-GGGACACTTGGTCATGATCTTATT 659
Query 732 CACAAGCCACGGTCTTTGTTA-TTGTATCTATTGGATATCCACA-AATC-A--AGTCTCT 786
||| ||||||||||| ||||| || ||||||||||||||||| | |||| | | ||||
Sbjct 660 CACCAGCCACGGTCTCTGTTACTT-TATCTATTGGATATCCA-AGAATCAATTATTCTCC 717
Query 787 CAGATGTTGGAGTGGGATAGGACCGGTATCTCGCATTTAGCCGGAGAGATAGCTCTGGTG 846
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 718 CAGATGTTGGAGTGGGATAGGACCGGTGTCTCGAATTTAGCCGGAGAGATAGCTCTGGTG 777
Query 847 GCCGGACTTTTGATGTGGGCCACCACAT-TCCCGGCGATTAGAAGGAGATTCTTCGAAGT 905
||||||||| ||||||||| |||||||| | ||| ||| || |||||||||||||||||
Sbjct 778 GCCGGACTTATGATGTGGGTCACCACATAT-CCGAAGATAAGGAGGAGATTCTTCGAAGT 836
Query 906 CTTCTTCTATACTCACTATCTCTACATGGTCTTCATGCTCTTCTTTGTCTTCCACGTTGG 965
|||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 837 CTTCTTTTATACTCATTATCTCTACATCGTCTTCATGCTCTTCTTCGTCTTCCACGTCGG 896
Query 966 CATCTCTTACGCGTTGATCTCATTTCCCGGTTTCTACATCTTCATGGTCGATCGTTTCTT 1025
||||||| | |||||||| || ||||||||||||||||||||| | ||||||||||||||
Sbjct 897 CATCTCTCATGCGTTGATTTCTTTTCCCGGTTTCTACATCTTCCTCGTCGATCGTTTCTT 956
Query 1026 GAGATTTCTCCAGTCGCGGAACAATGTCAAGCTAGTCTCTGCTCGTGTTCTTCCTTGTGA 1085
||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAGATCTCTTCAGTCACGCAACAATGTCAAGCTAGTCTCTGCTCGTGTTCTTCCTTGTGA 1016
Query 1086 AACTGTCGAGCTTAATTTCTCCAAAAACCCTATGCTGATGTATAGCCCGACGAGCA-TAT 1144
|| || ||||| ||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 1017 CACCGTTGAGCTCAATTTCTCCAAAAACCCTATGTTGATGTATAGCCCGACAAGCACTAT 1076
Query 1145 TGTTCGTGAACATACCGAGTATTTCGAAGCTTCAATGGCATCCATTTACGATAACTTCGA 1204
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 1077 -GTTCGTGAACATACAGAGTATTTCGAAGCTTCAGTGGCATCCATTTACGATAATTTCTA 1135
Query 1205 GTAGCAAACTCGAACCAAAGAAGCT-AAGTGTTATGATCAAGAGCCAAGGCAAATGGTCC 1263
||||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||
Sbjct 1136 GTAGCAAACTCGAACCAGAGAC-CTTAAGTGTTATGATCAAGAGCCAAGGAAAATGGTCC 1194
Query 1264 AGTAAGCTTCACCATATGCTTGCTTC-T-T-C-TA--ATCAGATCGACCACCTTGCTGTT 1317
||||||||| || |||||||| |||| | | | | |||| ||| | | ||| ||||||
Sbjct 1195 AGTAAGCTTTACGATATGCTTTCTTCATCTTCCTCTGATCAAATCAATCGCCTAGCTGTT 1254
Query 1318 TCCGTCGAGGGACCCTACGGCCCT-GCTTCCACTGATTACCTACGACATGACTCTCTGGT 1376
||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1255 TCCATCGAGGGACCCTACGGCCCTAG-TTCCACTGATTTCCTACGACATGACTCTCTGGT 1313
Query 1377 TATGGTGAGTGGAGGCAGTGGGATAACACCGTTCATCTCCATAATCCGCGACCTACT-CT 1435
|||||||||||||||||||| || |||||||| ||||||||||||||||||||| | ||
Sbjct 1314 GATGGTGAGTGGAGGCAGTGGCATTACACCGTTTATCTCCATAATCCGCGACCTA-TACT 1372
Query 1436 ACGTGAGCTCAACGAACGC-T-TACAAAACCCCCAAAATAACCTTAATATGCGCGTTCAA 1493
|| |||| |||||| || | ||||| ||| ||||| ||| |||| ||||| |||||
Sbjct 1373 ACATGAGTTCAACGCACAAATGTACAAT-CCCT-AAAATGACCCTAATCTGCGCCTTCAA 1430
Query 1494 GAATTCTTCCGACCTCTCAATGCTCAACCTAATCTTACCGAAC-----TC-CACC---GA 1544
|| ||||||||||| || ||||| |||||||| |||||| | || |||| ||
Sbjct 1431 AAACTCTTCCGACCTTTCCATGCTTGACCTAATCCTACCGACCCCCGGTCTCACCACCGA 1490
Query 1545 GATCTCCTCCTTTATAGATATCCAGATCAAAGCCTTTGTCACCCGAGAG-A-AA------ 1596
|||||||| ||| |||||||||| ||||||||||| || ||||||||| | ||
Sbjct 1491 CATCTCCTCGTTTGTAGATATCCATATCAAAGCCTTCGTTACCCGAGAGGAGAAAAACCC 1550
Query 1597 -GTA------TCAAC-CTGCAATATGAATATCATCAAAACCCTC-AGTTTCAAACCATAT 1647
||| ||||| | ||||| |||||||||||||||||| | |||||||||| |
Sbjct 1551 AGTAAAAGAATCAACTCA-CAATAGGAATATCATCAAAACCCTATA-TTTCAAACCAAAC 1608
Query 1648 GTCTCAGACCAACCCATCTCACCAATCCTCGGACCGAACTCCTGGCTGTGGCTGGCCACC 1707
|||||||||||||||||||||||||||||||| || ||||| ||||| || || || |||
Sbjct 1609 GTCTCAGACCAACCCATCTCACCAATCCTCGGGCCCAACTCTTGGCTCTGTCTTGCAACC 1668
Query 1708 ATCCTCTCTTCTTCATTCATGATCTTTATAATCATCATCGCAATCATCTCAAGATATCAC 1767
|||||||||||||| |||||||||||| | | |||||||||||||| | |||||||||
Sbjct 1669 ATCCTCTCTTCTTCCTTCATGATCTTTCTTGTTATCATCGCAATCATAACGAGATATCAC 1728
Query 1768 ATTTACCCAATCGATCAAAGCTCG-AAAGAGTACACTTCGGCTTATACATCTCTCATTTA 1826
|| |||||||||||||||| |||| ||| ||||||||| |||||||| ||| ||||||||
Sbjct 1729 ATCTACCCAATCGATCAAAACTCGGAAA-AGTACACTTGGGCTTATAAATCGCTCATTTA 1787
Query 1827 CCTTCTAGCAATCTCTATTAGCGTGGTGGCTACGTCTACGG-TCGCTATGTTGTGTAACA 1885
|||| || | ||||| |||||||||||| |||| ||||| | | || |||||||| ||||
Sbjct 1788 CCTTATATCGATCTCCATTAGCGTGGTGACTACTTCTACAGCT-GCCATGTTGTGGAACA 1846
Query 1886 AAAAGAGTTATTTTAAGGGTTTAT--ATCAAAAC-GTTGACGCATT-GTCTCCGTTGATG 1941
|||| || |||| | | | | | ||| | || ||| ||| ||||||||||||
Sbjct 1847 AAAAAAGGTATTAT--GCGAAAAGCGACCAAT-CTGTCGACA-ATTTGTCTCCGTTGATT 1902
Query 1942 ATCGAGAGCTCGCCAG-ATCAGTTGCTACCGGAATTCACCAACATTCATTATGGAGAAAG 2000
||||||||||| || | | || ||| || || ||| |||| ||||| | || ||||| ||
Sbjct 1903 ATCGAGAGCTCACC-GCAACAATTGTTATCGCAATCCACCGACATTTACTACGGAGAGAG 1961
Query 2001 GCCAAATCTTAACAAGCTCCTAGTTGGTTTAAAGGGTTCGAGCGTTGGAGTTCTTGTGTG 2060
||| |||||||||||||| ||||||||| || |||||||||||| ||||||||||||||
Sbjct 1962 GCCTAATCTTAACAAGCTTCTAGTTGGTGTACCGGGTTCGAGCGTGGGAGTTCTTGTGTG 2021
Query 2061 TGGTCCAAGGAAGATGAGAGAAGAGGTTGCAAAGATTTGTTCCTTTGGTTCGGCTGCGAA 2120
|||||| |||||||||||| ||||||| || || |||||||| || |||| ||||| |||
Sbjct 2022 TGGTCCGAGGAAGATGAGACAAGAGGTAGCGAATATTTGTTCGTTAGGTTTGGCTGAGAA 2081
Query 2121 TCTTCAATTTGAATCTATTAGTTTCAACTGGTGA 2154
|||||| ||||||||||||||||| | |||||||
Sbjct 2082 TCTTCAGTTTGAATCTATTAGTTTTAGCTGGTGA 2115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5