BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23030.1
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472553 jgi|Araly1|472553|fgenesh2_kg.1__2507__AT1G23030.1 3434 0.0
> Ahg472553 jgi|Araly1|472553|fgenesh2_kg.1__2507__AT1G23030.1
Length=2182
Score = 3434 bits (1859), Expect = 0.0
Identities = 2079/2184 (95%), Gaps = 19/2184 (1%)
Strand=Plus/Plus
Query 1 CTTCTGAGTAAAGAACCAATCCCAAAGCTCATTTATTCTTTCCTTTTCAATTATTCTTTC 60
|||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 CTTCTGAGTAAAGAACGAATCCCAAAGCTCATTTATTCTTTTCTTTTGTATTATTCTTTC 60
Query 61 AA--TTTTTCCGATCGACGGAGGTTGATCGGCGACGGCGTAATGGCCGGAGGAATCGTCT 118
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 61 AATTTTTTTCCGATTGACGGAGGTTGGTCGGCGACGGCGTAATGGCCGGAGGAATCGTTT 120
Query 119 CACCGGCCTCTCTACTCGACCTAATCGCTGATATCGTCGAGATTCCACTCAACACCGGAA 178
|||| ||| ||||||||||||||||| | |||||||||||||||||||||||| |||| |
Sbjct 121 CACCCGCCACTCTACTCGACCTAATCACCGATATCGTCGAGATTCCACTCAACGCCGGCA 180
Query 179 TGTTCAAGAAGGATTGCGCAGATCTCACTCGACGAGTTTGTCTCTTAACGCATTTGTTAG 238
| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 181 TTTTCAAGAAGGATTGCGCGGATCTCACTCGACGAGTCTGTCTCTTGACGCATTTGTTAG 240
Query 239 AGGAGATTAGAGACTCAACTCCTATCGATTCCGCCGCTTCGTCGTCGTCGGAGAATGATT 298
| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct 241 AAGAGATTAGAGACTCAACTCCGATCGATTCCGCTGCTTCGTCGTCGTCGGAAAATGACT 300
Query 299 GGTGGTCTGATCTCGTGGTC-GGACTTCAAGCCGCGAAGCGTCTTCTCTCCACAGCTCGA 357
||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGGTCTGATCTTGTGG-CGGGACTTCAAGCCGCGAAGCGTCTTCTCTCCACAGCTCGA 359
Query 358 TTCCAAGCTCGCGATTCCTCTGATGGTGCTGCGAAGAGAATCTCATTTCAGTTCCAATGT 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 TTCCAAGCTCGCGATTCCTCTGATGGTGCTGCGAAGAGAATCTCATTCCAGTTCCAATGT 419
Query 418 GTTACATGGAAGCTTGAGAAAGCATTGAGCAATCTTCCATATGATCTTTATGATATCTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTACATGGAAGCTTGAGAAAGCATTGAGCAATCTTCCATATGATCTTTATGATATCTCT 479
Query 478 GACGAAGTTGGAGAACAAGTGGAGCTAGCGAGATCACAGTTGCGAAGAGCAATGCAGAGA 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 GACGAAGTTGGAGAACAAGTGGAGCTAGCGAGATCGCAGTTGCGAAGAGCAATGCAGAGA 539
Query 538 TATGGATCGTTGAATTCGAACAAGTTCTCGAGTGCTTTATCTGAGCCAATGGAGAGAGAT 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATGGATCGTTGAATTCGAATAAGTTCTCGAGTGCTTTATCTGAGCCAATGGAGAGAGAT 599
Query 598 GGTTTTAGTAATGTTATAAAGATCAAAGCTGAGGAAAAGCTTGAGAGTGTTTCAGAAACA 657
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTCTTAGCAATGTTATAAAGATCAAAGCTGAGGAAAAGCTTGAGAGTGTTTCAGAAACA 659
Query 658 CTTCATTTTGGTGAGGAGGAGGAGAAACAA-AGTTCGCCGCCTCTAAGGAGAAGCTCTTC 716
|||||||||| ||||||||||||||||||| | ||| || ||||||||||||||||||||
Sbjct 660 CTTCATTTTGTTGAGGAGGAGGAGAAACAAGA-TTCCCCACCTCTAAGGAGAAGCTCTTC 718
Query 717 CATTTCTTTGGCTTATTATTTGTCCAAAGATGCTGATACTGATAGATTAGACAAAATGGT 776
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 719 CATTTCGTTGGCTTATTATTTGTCCAAGGATGCTGATACCGATAGATTAGACAAAATGGT 778
Query 777 TAACAAGAACACTGATGAATCGAAGAAATCTGATAAACTCACGATTCCGGTTGATTTTCT 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 779 TAACAAGAACACTGATGAATCGAAGAAGTCTGATAAACTCACGATTCCGGTTGATTTTCT 838
Query 837 TTGTCCGGTGTCGCTTGAACTGATGAAGGATCCTGTCATTGTTGCCACAGGACAGACTTA 896
||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 839 TTGTCCGGTGTCGCTGGAACTGATGAAGGATCCAGTTATTGTTGCTACAGGACAGACTTA 898
Query 897 CGAGAGGGCATACATACAGAGATGGATCGACTGTGGGAATCTAACATGTCCTAAGACTCA 956
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGAGAGGGCGTACATACAGAGATGGATCGACTGTGGGAATCTAACATGTCCTAAGACTCA 958
Query 957 GCAGAAACTCGAAAACTTTACGCTTACACCAAACTATGTTCTCAGAAGTCTCATCTCTCG 1016
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 GCAGAAACTCGAAAACTTTACGCTTACACCAAACTATGTTCTCAGAAGCCTCATCTCTCG 1018
Query 1017 GTGGTGCGCTGAACACAACATTGAGCAACCTGCAGGTTACATTAACGGCAGGACAAAAAA 1076
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1019 GTGGTGCACTGAACACAACATTGAGCAACCTGCAGGTTACATTAACGGCAGGTCAAAAAA 1078
Query 1077 CAGTGGAGATATGTCGGTGATCCGGGCCTTGGTTCAGAGACTCTCAAGCCGGTCAACAGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGTGGAGATATGTCGGTGATCCGGGCCTTGGTTCAGAGACTCTCAAGCCGGTCAACAGA 1138
Query 1137 GGATCGAAGGAATGCGGTTTCTGAAATCCGCTCTCTGTCAAAGAGAAGTACGGATAATCG 1196
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1139 GGATCGAAGGAATGCGGTTTCTGAAATCCGGTCTCTGTCAAAGAGAAGCACGGACAATCG 1198
Query 1197 CATTCTGATTGCAGAAGCAGGAGCAATCCCTGTTTTGGTGAATCTTTTAACCTCAGAGGA 1256
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1199 CATTCTGATTGCAGAAGCAGGAGCAATCCCTGTTTTGGTGAACCTTTTAACCTCAGAGGA 1258
Query 1257 TGTTGCAACGCAGGAAAACGCAATCACATGTGTTCTCAACCTCTCTATATATGAAAACAA 1316
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1259 CGTTGCAACGCAGGAAAACGCAATTACATGTGTTCTCAACCTCTCTATATATGAGAACAA 1318
Query 1317 CAAAGAGCTGATAATGTTTGCTGGTGCAGTCACCTCAATTGTTCAAGTCCTTAGAGCCGG 1376
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1319 CAAAGAGCTGATAATGTTTGCTGGTGCAGTCACCTCAATCGTTCAAGTCCTTAGAGCCGG 1378
Query 1377 AACCATGGAAGCAAGAGAAAACGCAGCAGCGACACTTTTTAGCCTGTCGTTAGCCGATGA 1436
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1379 AACCATGGAAGCAAGAGAAAACGCAGCAGCGACACTTTTTAGCCTTTCGTTAGCCGATGA 1438
Query 1437 GAACAAGATCATAATAGGCGGGTCAGGTGCGATACCTGCCTTAGTTGATCTGCTCGAGAA 1496
||||||||||||||| ||||| || |||||||||||||||||||| |||||||| || ||
Sbjct 1439 GAACAAGATCATAATCGGCGGATCGGGTGCGATACCTGCCTTAGTGGATCTGCTTGAAAA 1498
Query 1497 CGGGACCCCGAGAGGGAAGAAAGATGCAGCAACGGCATTGTTCAATCTCTGCATTTATCA 1556
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1499 CGGGACCCCGAGAGGGAAGAAAGATGCAGCCACGGCATTGTTCAATCTCTGCATTTATCA 1558
Query 1557 TGGAAACAAAGGTAGAGCAGTCAGAGCCGGTATAGTAACTGCATTGGTTAAGATGCTCAG 1616
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1559 TGGAAACAAAGGTCGAGCGGTCAGAGCCGGTATAGTAACAGCATTGGTTAAGATGCTGAG 1618
Query 1617 TGATTCCACCCGCCACCGGATGGTTGATGAAGCTTTGACAATTCTCTCAGTTCTTGCAAA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGATTCCACCCGCCACCGGATGGTTGATGAAGCTTTGACAATTCTCTCAGTTCTTGCAAA 1678
Query 1677 TAATCAAGACGCGAAATCCGCGATAGTAAAAGCGAATACTCTACCCGCGTTGATAGGTAT 1736
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 1679 TAATCAAGACGCGAAATCCGCGATAGTAAAAGCGAATACTTTACCTGCATTGATAGGTAT 1738
Query 1737 TCTCCAAACGGATCAAACTAGAAACCGAGAGAACGCAGCAGCGATATTGCTTTCGCTGTG 1796
|||||| |||||||||||||||||||||||||| |||||||||||||| || || |||||
Sbjct 1739 TCTCCAGACGGATCAAACTAGAAACCGAGAGAATGCAGCAGCGATATTACTGTCTCTGTG 1798
Query 1797 TAAAAGAGACACTGAGAAACTGATCACTATCGGTAGACTCGGTGCGGTTGTCCCGTTAAT 1856
||| |||||||||||||||||| || |||||||||||||||| |||||||| || || ||
Sbjct 1799 TAAGAGAGACACTGAGAAACTGGTCTCTATCGGTAGACTCGGCGCGGTTGTGCCATTGAT 1858
Query 1857 GGATTTATCGAAGAATGGAACAGAGAGAGGCAAAAGGAAAGCCATATCTTTGTTAGAGCT 1916
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GGATCTATCGAAGAATGGAACAGAGAGAGGCAAAAGGAAAGCCATATCTTTGTTAGAGCT 1918
Query 1917 TCTTCGTAAAGCATGCCAATAATAACTAGTCTTCTGACAAAAA-A-----GGTTCATCAA 1970
||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 1919 TCTACGTAAAGCATGCCAATAATAACTAGTCTTCTGACAAAAACAAAAAAGGTTCATGAA 1978
Query 1971 GCTCTCatttttattgagtttattaaattatgttaatattcttgtttaattgatttgatt 2030
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1979 GCTCTCATTTTTATTGAGTTTATTAAATTATGTTAATATTCTTGTTCAATTGATTTGATT 2038
Query 2031 ttttttGG--A-A-T--T-CCATTTGTGGAATCGAAATTGAAGATGGTGAGCGAAAATGG 2083
||||| || | | | | ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2039 TTTTTGGGGGATACTAATTCCATTTGTGGAATCGAATTTGAAGATGGTGAGCTAAAATGG 2098
Query 2084 TGTTCGAAAATCGAACTCTGTTTTGCTCGCTGTGTATTTATTTGTTACATTTGTAATAAT 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 TGTTCGAAAATCGAACTCTGTTTTGCTCGCTGTGTATTTATTTGTTACATTTGTAATAAT 2158
Query 2144 ATTGGAGATGAATGAATAAGTATT 2167
||||||||||||||||||||||||
Sbjct 2159 ATTGGAGATGAATGAATAAGTATT 2182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81779756015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5