BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G23040.1

Length=904
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472554 jgi|Araly1|472554|fgenesh2_kg.1__2508__AT1G23040.1        1000    0.0  


> Ahg472554 jgi|Araly1|472554|fgenesh2_kg.1__2508__AT1G23040.1
Length=834

 Score = 1000 bits (541),  Expect = 0.0
 Identities = 702/771 (91%), Gaps = 45/771 (6%)
 Strand=Plus/Plus

Query  1    TACAAAACTCTGTTTTTGATTTTCTCTTTGATCAAAATCAAAAAACGCCGATCACAAGTT  60
            ||||||||||||||||| ||||||||||||||||||||       |||||||  | |   
Sbjct  1    TACAAAACTCTGTTTTTCATTTTCTCTTTGATCAAAAT-------CGCCGAT--C-A---  47

Query  61   CACAACATGCCGGGAAATTCTCACCGCCGGGGATCCGACGTCATATTCACCGTGATGATG  120
            |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  48   CAC--CATGCCGGGAAATTCTCACCGCCGGGGATCCGTCGTCATATTCACCGTGATGATG  105

Query  121  ATCGCCTTGCTGACGTGTCCAACACTCATCAACGG-TTCATCATCATCAGATGCTTCTTT  179
            ||| | |||||||||||||||| | ||||||| || ||||||||||||||||||||||||
Sbjct  106  ATCACGTTGCTGACGTGTCCAATAATCATCAA-GGCTTCATCATCATCAGATGCTTCTTT  164

Query  180  AGAAGCAAGAAAGCTCGATGAGGTCGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA  239
            || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  165  AGCAGCAAGAAAGCTCGATGAGGTTGATCCCATAAAGTGCTCTCCAAGCTGCATCCAAAA  224

Query  240  CCCTCCTCCGCCATCTCCTCCACCACCGTCTCCGCCACCACCTGCATGTCCTCCACCCCC  299
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  225  CCCTCCTCCGCCGTCTCCTCCACCACCGTCTCCGCCACCACCTGCGTGTCCTCCACCGCC  284

Query  300  GGCTCTTCCACCGCCTCCGCCTAAGAAAGTCAGTTCCTACTGCCCACCGCCT---CCGCC  356
            |||||| |||||||||||||| ||||||||||||||||||||||||||||||   |||||
Sbjct  285  GGCTCTCCCACCGCCTCCGCCGAAGAAAGTCAGTTCCTACTGCCCACCGCCTCCGCCGCC  344

Query  357  GGCTAATTTCTTGTACATCACGGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT  416
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  345  GGCTAATTTCTTGTACATCACCGGTCCGCCGGGAAATCTCTACCCCGTTGATGAGCAATT  404

Query  417  CGGAGCGGCCGCCGGAAAAAGTTTTATGGTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG  476
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  405  CGGAGCGGCCGCCGGAAAAAGTTTTATGTTGGTGAAGCTCTCCGGTCTAATCGCGTTTGG  464

Query  477  AATTATGGCGTTCCTGATTCTTTGAAATTAACATGATCGGAGAAAAAATATATTTGAAGA  536
            |||| ||| |||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  465  AATTGTGGGGTTCTTGATTCTTTGAAATTAACATGATCGGAGAAAAAAAA-ATTTGAAGA  523

Query  537  TCTGTTGGTATGTTTTAGATACTTTTTAATTAGTTGTTGAAGAACGTTATTGATGGTTGG  596
            ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  524  TCTGTTGGTATGTTTCAGATACTTTTTAATTAGTTGTTGAAGAACTTTATTGATCGTTGG  583

Query  597  TTAATAATTTTTCTAGCTAGGATTATATATGTTTCAAT-ATATTTTCCTATATCCAAATT  655
            ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct  584  TTAATAATTTTTCTAGCTAGGATCATATATGTTTCA-TCATATTTTCCTATATCCAAATT  642

Query  656  TTCTAATGGTTTTT-AACCAAATTAATAAGGTACGAATACTAAAATTTCTGTTCAGAGAA  714
            |||||||||||||| |||||| |||||||||||  |              |   ||| ||
Sbjct  643  TTCTAATGGTTTTTTAACCAAGTTAATAAGGTA--A--------------G---AGA-AA  682

Query  715  ATATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA  765
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  683  -TATGTAAATTCTAGAAATGTATTCTCTTGATGTGATATGTTCTCTGTTCA  732


 Score =  182 bits (98),  Expect = 5e-45
 Identities = 112/118 (95%), Gaps = 3/118 (3%)
 Strand=Plus/Plus

Query  786  TGTTCTGTGTTCAACTTGCCATTGATGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT  845
            |||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||
Sbjct  720  TGTTCTCTGTTCAACTTGCCA-T--TGAATTGATTCTCAAAATTGGAAAGTTTTCTTTGT  776

Query  846  GCGGAATAATTTTATGAAAAAGCAAATTGTTCTTAATAAAAGTAAAGATAGttttttt  903
            |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct  777  GCGGAATAATTTTATGAAAAAGTAAATTGTTCTTAATAAAAGTAAAGATATTTTTTTT  834



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33510044043


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5