BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23052.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472555 jgi|Araly1|472555|fgenesh2_kg.1__2509__AT1G23050.1 1053 0.0
> Ahg472555 jgi|Araly1|472555|fgenesh2_kg.1__2509__AT1G23050.1
Length=792
Score = 1053 bits (570), Expect = 0.0
Identities = 708/772 (92%), Gaps = 19/772 (2%)
Strand=Plus/Minus
Query 52 ATTTTTTCTGCTAC-AGTTCCGCTTCAGTAT-ATTCTAAAGTATTACAATATCTCTTACA 109
|||||||||||| | ||||||||| |||| | |||||||||||||||||||| |||||||
Sbjct 759 ATTTTTTCTGCT-CTAGTTCCGCTGCAGT-TGATTCTAAAGTATTACAATATTTCTTACA 702
Query 110 TACATAACACACaaaaaaaCTCCCACAAGAGTTACGTATTTATTAAGTTATAAACAGAAT 169
|| || | | | ||||||| ||||||||||||| || ||||||||||||||| |||
Sbjct 701 TA-AT---ATA-AGAAAAACTTCCACAAGAGTTAC-TA---ATTAAGTTATAAACAAAAT 651
Query 170 GTTACCGAGAACTCCAACAACCACAAGATTTGCCACGGCTACGATCCTCACCGTCCATTT 229
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 GTTACCGAGAACTCCAACCACCACAAGATTTGCCACGGCTACGATCCTCACCGTCAATTT 591
Query 230 CCCTGGAACCGCCACGTGTGAAGACGAGGACGTTTGATCCGTTTGGTGAGGAGGTTTTCT 289
||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 590 CCCTGCAACCGCCACGTGTGAAGACGACGAGGTTTGATCCGTTTGGTGAGGAGGTTTTCT 531
Query 290 AAAGTAGTAAGGGAAGTACGGCAAAATAGCATTCGGCGGTGGAGGGCCATAGAAGCTGCT 349
||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||
Sbjct 530 GAAGTAGTAAGGGAAGTACGGCAAGATAGCATCCGGCGGTGGAGGACCATAGAAGTTGCT 471
Query 350 GCCACTACTGTCTCCGCCACCATACGGTGGAGAAGGGTAGTTAGGTATATTCCCAACCGG 409
|||||||| ||||||||||||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 470 GCCACTACCGTCTCCGCCACCATATGGTGGAGAAGGATAGTTTGGTATATTTCCAACCGG 411
Query 410 AGGAGGGTAATTTGGTAAATTCCCAGCTGGAGTAGGGTAGTTAACGCCTGGAGGAGGATA 469
|||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 410 AGGAGGATAATTCGGTAAATTCCCAGCTGGAGAAGGGTAGTTAACGGCTGGAGGAGGATA 351
Query 470 TGGTGGTGGTTGAGTCATGGAAGGTGTGGAGGAGCCACCACCAATAGGCGGCGTTGGATA 529
||||||||||||||||||||| || |||||||| | || ||||||||||||||||||||
Sbjct 350 TGGTGGTGGTTGAGTCATGGAGGGCGTGGAGGAACTGCCGCCAATAGGCGGCGTTGGATA 291
Query 530 ACACGGGTAGGGACATGGTGTGTCGGATATGACTAAGTAGGGGAAGTAAACAAGAGAAAA 589
||||||||| |||||||| || ||||| ||| |||||||||||||||||||||||||||
Sbjct 290 ACACGGGTACGGACATGGCGTCTCGGACATGGTTAAGTAGGGGAAGTAAACAAGAGAAAA 231
Query 590 GACGAAGATTAAGGTCAAGAAGAGAAGGCCATGATCgtttgtgttcatgttttcttttgt 649
|| ||||| |||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 230 GATGAAGAATAAGCTCAAGAGGAGAAGGCCATGATCGTTTGTGTTCATGGTTTCTTTTGT 171
Query 650 tttgttttACAAGAACTTGGTGAAAGAATGGTTC---ttttttttt-AATGGTAAACAAA 705
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 170 TTTGTTTTACAAGAACTTGGTGAAAGAATGGTTCTTTTTTTTTTTTAAATGGTAAACAAA 111
Query 706 GAACTTTGGATAAGAGAAAGTAAATTAAGATAAGttttttttGGCAAAAGCTTAGTTGGA 765
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 110 GAATTTTGGATAAGAGAAAGTAAATTAAGATAAG--TTTTTTGGCAAAAGCTTAGTTGGA 53
Query 766 AGGTGTGGACTCTAGCTAGAAGACACTTGTCTTGTGAATTATTGGAACGAAT 817
||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 52 AGGTGTGGACTCTAGCTAGAAGACACTTGTCTTGTGAATTATTGGGACTAAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5