BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23060.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472556 jgi|Araly1|472556|fgenesh2_kg.1__2510__AT1G23060.1 1722 0.0
> Ahg472556 jgi|Araly1|472556|fgenesh2_kg.1__2510__AT1G23060.1
Length=1414
Score = 1722 bits (932), Expect = 0.0
Identities = 1298/1465 (89%), Gaps = 64/1465 (4%)
Strand=Plus/Plus
Query 1 AGCTTTCTTTGCCAAATCTGAATTCGACGTTTTACTTACAGACTTCTCTTGTCCAAGTTC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AGCTTTCTTTGCCAAATCTGAATTCGACGTTTTAATTACAGACTTCTCTTGTCCAAGTTC 60
Query 61 CTCATTCGTGCTCCAAAGTTACTTCATCAAATTCGTATACTACTCTCTGTTTTTTAATGC 120
||||||||||||||| |||||| | || | || | | | || |||
Sbjct 61 CTCATTCGTGCTCCAGAGTTAC-T--TC--A-TC--A-A--A-----------TT--TGC 96
Query 121 TCTTTGCTCCAACATACGGACTCTTT--TAGATTATATAATGGCGGGAGAGGTCCAAGAT 178
|||||||| | |||||||| | |||| |||||||||| |||||||||||||| |||||
Sbjct 97 TCTTTGCT-CTACATACGG-CACTTTACTAGATTATATGATGGCGGGAGAGGTTCAAGAG 154
Query 179 CCGTTTAACCTAAGCCTTTTGGAGAATTCTATACACTCGGGATCAGTATCATTTGGAAGA 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCATTTAACCTAAGCCTTTTGGAGAATTCTATACACTCGGGATCAGTATCATTTGGAAGA 214
Query 239 TTCGAGAAGGAATCTTTATCATGGGAGAGGAGATCATCCTTCTCTCGCAATATATATCTT 298
|||||||| ||||||||||||||||||| ||||||||||||||||| ||| | ||||||
Sbjct 215 TTCGAGAAAGAATCTTTATCATGGGAGAAGAGATCATCCTTCTCTCACAACAGATATCTA 274
Query 299 GAAGAGGCAGAG-AGATTCTCTAAACCAGGCTCTGTTACTCAGATGAGAGCTCATTTTGA 357
|||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 275 GAAGAGGCTGAGAAG-TTCTCTAAACCAGGCTCTGTTACTCTGATGAGAGCTCATTTCGA 333
Query 358 GGCGCATTTTAAGAAGAAAGGGATCCGTTTTCCGAGTTCTGTTGAATCTCAAACATGGGG 417
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 334 GGCGCATTTTAAGAAGAAAGGGATTCGGTTTCCGAGTTCTGTTGAAGCTCAAACATGGGG 393
Query 418 AGAAGTTGTTCATCATCAAACTTGTACTGAGAAAGATGAAAATTTGTGGGAGAACACAAG 477
||||||||||||||||||||||||||||||| || | | | | |||||||||||
Sbjct 394 AGAAGTTGTTCATCATCAAACTTGTACTGAG-AA-A-G---A----T--GAGAACACAAG 441
Query 478 TCAATTCGGTGATTCTTGTGTGAGTTTTGACGAGACGATTCTTGTGAATTCTGATGATGA 537
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 442 TCAATTTGGTGATTCTTGTGTGAGTTATGACGAGACGATTCTTGTGAATTCTGATGATGA 501
Query 538 TGTTCATACTTCTATTTCTGTTGCTTTGGAGAGAACTGATATTGGTC-GCATTGAAGATG 596
|||| ||||||||||||||||||||||||||| |||||| ||||| | | | ||||||||
Sbjct 502 TGTTGATACTTCTATTTCTGTTGCTTTGGAGAAAACTGAAATTGGCCAG-AGTGAAGATG 560
Query 597 AAAAAGAAACAAAATCTTCTTCCTCCGCAACTAGATCGAAGCCTTTGAAAAATGTTCAAA 656
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| || |
Sbjct 561 AAAAAGAAACATCATCTTCTTCCTCCGCAACTAGATTGACGCCTTTGAAAAATGTCCACA 620
Query 657 AAGCTCG-TCCTTATTCTGCGACGAATAAAGATTCTACCAAGAAGCATGTTGTCATACCA 715
|| || | ||||| ||| || ||| |||| |||||| |||||||||||||||||| ||
Sbjct 621 AATCT-GTTCCTTGTTC--CG-CGACCAAAGCTTCTACAAAGAAGCATGTTGTCATAGCA 676
Query 716 AAGGGATATTCTCCAAGTTCTAATGCTAAAACAAGTGTTGACACTAAGAGACAAAAGGAA 775
||||||| ||||||||||| |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 677 AAGGGATCTTCTCCAAGTTGTAATACTAAAACCAGTATTGACACTAAGAGACAAAAGGAA 736
Query 776 TTGAAGCCTAAGAGGATTGTTGAAACCGTTGCATGTCAAGCTCCAGCTACATCAAAGAAA 835
||||||||||||||| | ||| ||||| | |||| |||||||||| | ||||||||||||
Sbjct 737 TTGAAGCCTAAGAGGGTAGTTAAAACCATAGCATCTCAAGCTCCAACAACATCAAAGAAA 796
Query 836 ACTGAGATCCTAAC---TCCTTTGTTGGCTACAAGAGAAAAGAAAACAAGTACTAATGGT 892
||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 797 TCTGAGATCCTAACAACTCCTTTGGTGGCTACAAGAGGAAAGAGAACAACTACTAATGGT 856
Query 893 TTTAGTTT-ACGAAGTAACGAACGGGCCGAGAAGAAGAAAGAGGAGAAGGTGGAAGCTGT 951
|| ||||| | ||||||| ||||| |||| ||||| ||||||||| ||||| |||||||
Sbjct 857 TTCAGTTTCA-GAAGTAATGAACGAGCCGGGAAGAGGAAAGAGGAAAAGGTAAAAGCTGT 915
Query 952 GGTACGTAAAGCTCTTAACTTAAAAGCAAGACCATTGCCTAAAAGCACACAAGCTAGACC 1011
|| | ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 916 AGTGCCTAAAGATCTTAACTTAAAAGCAAGACCATTGCCTAAAATCACACAAACTAGACC 975
Query 1012 TCAACACACGTCAACAGGTCAGGCAAAGGCAAAGGCAAAGGCAAGAGATGATCACTCATC 1071
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 976 TCAACACACGCCAACAGGTCAGGCAAAGGCAAAGGCAAAAGCAAGAGATGATCACTCATC 1035
Query 1072 TACAGCTAGTTGTGATCGGTCATTGACAAATAGAATGGCCAAAAGTAAGGTCATTATTAA 1131
|| |||||||||||||||||||||| ||||| | |||||||| |||||| ||||||||||
Sbjct 1036 TATAGCTAGTTGTGATCGGTCATTGGCAAATGGCATGGCCAAGAGTAAGCTCATTATTAA 1095
Query 1132 CAAACAGAAGGCGGATATGCAGAGAAGTCTAAATGGAATTCGGCCAAAGACAAGCGACCA 1191
|||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 1096 CAAACAGAAGGCGGATATACAGAGGAGTCTAAACGGAATTCGACCAAAGACAAGCGATCA 1155
Query 1192 GACCGCGAGAAACAGCACGA-ACATAAGGAGTTTAGCGGTTAGGCGCTCTGCGGTTCAGG 1250
|||||||||||||| || | ||| |||||||||| |||||||||| ||||||||| |||
Sbjct 1156 GACCGCGAGAAACAATAC-ACACAGAAGGAGTTTACCGGTTAGGCGTTCTGCGGTTGAGG 1214
Query 1251 TTGCTTTGTGAGCAATTTCACTGTCTCTGCTTTTGTTCTTTAGTACTATTGGCCTCAAAT 1310
||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||| |
Sbjct 1215 TTGCTTTGTGAGCTATT-CAATGTCTCTGCTTTTGTTCTTTAGTACTAT-GGCCTCAATT 1272
Query 1311 GTGT-CTTTGTGTTTGTGTTTCTAGGCTGTAATGAGTAGAATGTTACATCATAGAAACGC 1369
| || |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1273 G-GTTCTTTGTGTTTTTGTTTCTATGCTGTAATGAGTAGAATGTTATATCATAGAAACGT 1331
Query 1370 AAAATACAAATAAACAATCAGAACCTATGTAACCTTATGTTAGAATCACCATTGCACC-A 1428
|||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |
Sbjct 1332 AAAATACAAATAAACAATCAGAACCTATGTAACCTTGTTTTAGAATCACCATTTCACCTA 1391
Query 1429 TTAAATCTT-TAAAAGCTTATAACT 1452
| | || || ||||||||||| |||
Sbjct 1392 T-ACAT-TTCTAAAAGCTTATTACT 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5