BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23070.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921335 jgi|Araly1|921335|scaffold_102616.1 1991 0.0
> Ahg921335 jgi|Araly1|921335|scaffold_102616.1
Length=1255
Score = 1991 bits (1078), Expect = 0.0
Identities = 1196/1255 (95%), Gaps = 0/1255 (0%)
Strand=Plus/Plus
Query 41 TATGTCTAAAATTTTGGAAGAATGGGAGTAACGGAGACAAGTACGTACAGAGATCTACAT 100
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATGTATAAAATTTTGGAAGAATGGGAGTAACGGAGACAAGTACGTACAGAGATCTACAT 60
Query 101 TTACCGTCTTTGATCATCGGAGGATCCTTCGCCACCGTTGCCATTTGTCTCTCCCTTTAC 160
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 61 TTACCGTCTTTGATCATCGGAGGATCATTCGCCGCCGTTGCCATTTGTCTCTCCCTTTTC 120
Query 161 TCTATCCTCCAACATCTCCGTTTCTACACCAATCCTGCTGAACAAAAATGGATTGTTTCT 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTATCCTCCAACATCTCCGTTTCTACACCAATCCTGCTGAACAAAAATGGATTGTTTCT 180
Query 221 GTTTTGTTTATGGTGCCAGTTTATGCAACTGAATCGATCATTTCCTTGTCCAATTCGAAA 280
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTTTTATTTATGGTGCCAGTTTATGCAACCGAATCGATCATTTCCTTGTCCAATTCGAAA 240
Query 281 TTCTCGCTGCCTTGTGACATTTTGAGAAACTGCTATGAAGCTTTTGCTTTGTATTCGTTT 340
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 TTCTCGCTACCCTGTGACATTTTGAGAAACTGCTATGAGGCTTTTGCTTTGTATTCCTTT 300
Query 341 GGAAGCTACTTGGTGGCATGTCTAGGTGGTGAAAGAAGAGTTGTTGAATACCTTGAAAAT 400
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 301 GGAAGCTACTTGGTGGCGTGTCTAGGTGGTGAAAGAAGAGTTGTTGAATACCTCGAACAT 360
Query 401 GAATCAAAGAAACCATTGTTAGAAGAAGGAGCAAATGAGAGTAAAaagaagaagaagaag 460
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GAATCAAAGAAACCATTGTTAGAAGAAGGAGCAAATGAGAGCAAAAAGAAGAAGAAGAAG 420
Query 461 aaTTCATTTTGGAAATTCTTGTGTGATCCATATGTCTTGGGACGAGAGCTCTTTGTGATA 520
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTTCATTTTGGAAATTCTTGTGTGATCCATATGTCTTGGGACGAGAGCTCTTTGTGATC 480
Query 521 GAAAAGTTTGGTCTCGTTCAATATATGATCCTCAAAACCTTTTGTGCCTTCTTGACATTT 580
|| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GAGAAGTTTGGTCTCGTCCAGTATATGATCCTTAAAACCTTTTGTGCCTTCTTGACATTT 540
Query 581 TTGTTGGAGCTTCTTGGTGTCTATGGTGATGGTGAATTCAAATGGTATTACGGATATCCA 640
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 541 CTGTTGGAGCTTCTTGGTGTCTATGGAGATGGTGAATTCAAATGGTATTACGGATACCCA 600
Query 641 TACATAGTGGTGGTGCTAAACTTCAGCCAAATGTGGGCTCTGTTTTGCTTGGTTCAGTTC 700
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 TACATAGTGGTGGTGCTAAACTTCAGCCAGATGTGGGCTCTGTTTTGCTTGGTTCAGTTC 660
Query 701 TATAATGTCACTCATGAACGGCTTAAAGAAATAAAACCGTTGGCTAAGTTCATTAGCTTT 760
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 661 TATAACGTGACTCATGAACGCCTTAAAGAAATAAAGCCGTTGGCTAAGTTCATTAGCTTT 720
Query 761 AAGGCTATCGTGTTTGCGACTTGGTGGCAAGGCTTCGGTATCGCGTTGCTTTGTTATTAC 820
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 AAGGCTATCGTGTTTGCCACTTGGTGGCAAGGCTTCGGGATCGCGTTGCTTTGTTATTAC 780
Query 821 GGTATACTTCCAAAAGAAGGTCGATTCCAAAACGGGCTGCAAGATTTCCTCATTTGCATT 880
|||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||
Sbjct 781 GGTATACTTCCAAAAGAAGGAAGATTCCAGAACGGGTTGCAAGATTTTCTCATTTGCATT 840
Query 881 GAGATGGCGATTGCAGCGGTGGCTCATCTCTTTGTTTTTCCAGCTGAACCTTACCACTAC 940
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 GAGATGGCGATTGCAGCGGTGGCTCATCTTTTTGTTTTTCCAGCTGAACCTTACCACTAT 900
Query 941 ATTCCGGTATCAGAGTGCGGTAAAATCACAGCCGAAACGAGCAAGACGGAAGTGAAACTA 1000
|||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 ATTCCGATATCAGTGTGTGGTAAAATCACAGCCGAAACAAGCAAGACGGAAGTGAAACTA 960
Query 1001 GAAGAAGGTGGTCTTGTTGAGACCACGGAGACTCAGGTTGAAGCATCTGGCACAAGCATT 1060
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 GAAGAAGGTGGTCTTGTTGAGACAACGGAGACTCAGGTTGAAGCATCTGGCACAAGCATT 1020
Query 1061 AAGGAGAGTGTACAGGACATAGTGATTGACGGTGGCCAACATGTCGTGAAAGATGTAGTT 1120
|||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct 1021 AAGGAGAGTGTACAAGACATAGTTATTGATGGTGGCCAACACGTCGTGAAAGATGTGGTT 1080
Query 1121 CTTACAATAAACCAAGCAATAGGACCGGTAGAGAAGGGTGTAACGAAGATCCAGGATACG 1180
||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1081 CTTACTATAAACCAAGCAATGGGACCGGTGGAGAAGGGTGTGACGAAGATCCAGGATACG 1140
Query 1181 ATTCATCAAAAACTTTTGGATTCGGACGGTAAAGAAGAAACAGAAGTGACCGAAGAAGTG 1240
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1141 ATTCATCAAAAGCTTTTGGATTCGGATGGTAAAGAAGAAACAGAAGTGACTGAAGAAGTG 1200
Query 1241 ACCGTTGAGACTTCGGTGCCCCCAAAAGAGTGATCGTTGAAATTTGCCCTTTGTT 1295
|||||||||||||||||||| ||||||||||||| |||| |||||| |||||||
Sbjct 1201 ACCGTTGAGACTTCGGTGCCGCCAAAAGAGTGATTTTTGAGATTTGCTCTTTGTT 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5