BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23080.1
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472559 jgi|Araly1|472559|fgenesh2_kg.1__2513__AT1G23080.1 3417 0.0
Ahg908693 jgi|Araly1|908693|Al_scaffold_0002_1774 529 4e-149
Ahg476492 jgi|Araly1|476492|fgenesh2_kg.2__1622__AT1G73590.1 355 7e-97
> Ahg472559 jgi|Araly1|472559|fgenesh2_kg.1__2513__AT1G23080.1
Length=2198
Score = 3417 bits (1850), Expect = 0.0
Identities = 2099/2217 (95%), Gaps = 25/2217 (1%)
Strand=Plus/Plus
Query 1 AAAAATCATCAAATCTTCTCCTtctctctctctctctcACACACTCACTAGCTTCTCTGT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCATCAAATCTTCTCCTTCT-TCTCTCTCTCTCACACACTCACTAGCTTCTCTGT 59
Query 61 TAAAAGCTTCCGTCATCACATAGAGAACAGAGACTGACACTAACTCACTTCCTAACGGTT 120
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 60 TAAAAGCTTCCGTCATCACACAGAGCACATAGACTGACACTAACTCACTTCCTAACGGTT 119
Query 121 TCCACACTCAAAATTACACTTTTGCCACTCCGGCGAACAACAATATGATCACATGGCACG 180
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 120 TCCACACTCAAAATTACACTTTTGCCACTCCGGCCCTCAAC-A-ATGATCACATGGCACG 177
Query 181 ACCTCTACACCGTCCTCACGGCGGTGATACCACTCTACGTAGCCATGATCCTCGCTTACG 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACCTCTACACAGTCCTCACGGCGGTGATACCACTCTACGTAGCCATGATCCTCGCTTACG 237
Query 241 GCTCAGTCCGGTGGTGGAAAATCTTCTCACCAGACCAATGTTCCGGCATAAACCGCTTCG 300
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 238 GCTCCGTCCGGTGGTGGAAAATTTTCTCACCAGACCAATGCTCCGGCATAAACCGCTTCG 297
Query 301 TCGCTATTTTCGCCGTCCCTCTTCTCTCTTTCCACTTCATCTCCTCAAACAATCCTTACG 360
|||| |||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||
Sbjct 298 TCGCCATTTTCGCTGTCCCTCTCCTCTCTTTCCACTTCATCTCCTCCAACAACCCATACG 357
Query 361 CAATGAATCTCCGATTCATCGCAGCCGATACACTCCAAAAACTAATCATGCTCACTCTCC 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 CAATGAATCTCCGATTCATCGCCGCCGATACACTCCAAAAACTAATCATGCTCACTCTCC 417
Query 421 TAATCATCTGGGCTAACTTCACTCGCTCCGGTAGTCTTGAATGGAGCATCACAATCTTCT 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 TAATCATCTGGGCTAACTTCACTCGCTCCGGTAGTCTCGAATGGAGCATCACAATCTTCT 477
Query 481 CTCTTTCAACACTTCCCAACACTCTCGTTATGGGAATACCTCTCTTGATCGCCATGTACG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTCTTTCAACACTTCCCAACACTCTCGTTATGGGAATACCTCTCTTGATCGCCATGTACG 537
Query 541 GAGAATATTCCGGCTCACTCATGGTTCAGATCGTTGTTCTTCAGTGTATAATCTGGTACA 600
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 GCGAATATTCCGGCTCACTCATGGTTCAGATCGTTGTTCTTCAGTGTATAATATGGTACA 597
Query 601 CGCTTCTTCTCTTTCTTTTCGAATACAGAGGAGCTAAGATCTTGATCATGGAACAGTTTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 CGCTTCTTCTCTTTCTTTTCGAATACAGAGGAGCTAAGATCTTGATCATGGAACAGTTCC 657
Query 661 CAGAGACTGGTGCTTCGATTGTATCGTTCAAAGTTGAGTCCGATGTTGTTTCTTTAGATG 720
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 658 CAGAGACTGGTGCTTCGATTGTATCATTCAAAGTTGAGTCCGATGTTGTTTCTTTAGACG 717
Query 721 GACATGATTTTCTTGAAACTGATGCTCAAATCGGTGACGATGGTAAGCTTCATGTTACGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GACATGATTTTCTTGAAACTGATGCTCAAATCGGTGACGATGGTAAGCTTCATGTTACGG 777
Query 781 TGAGAAAATCAAACGCTTCTCGGAGATCTTTTTACGGTGGTGGTGGTACTAATATGACTC 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGAGGAAATCAAACGCTTCTCGGAGATCTTTTTACGGTGGTGGTGGTACTAATATGACTC 837
Query 841 CTCGTCCGTCTAATCTCACCGGAGCTGAGATTTATAGTCTTAACACTACTCCAAGAGGAT 900
|||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 CTCGTCCGTCGAATCTCTCCGGAGCTGAGATTTATAGTCTTAACACTACTCCGAGAGGAT 897
Query 901 CTAACTTCAATCATTCTGATTTTTACTCTATGATGGGGTTTCCCGGTGGCCGGCTTTCGA 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 CTAACTTCAATCATTCTGATTTTTACTCTATGATGGGATTTCCCGGTGGCCGGCTTTCGA 957
Query 961 ACTTTGGTCCGGCGGATATGTACTCTGTTCAGTCCTCGAGAGGACCTACTCCTAGACCTT 1020
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 958 ACTTTGGTCCGGCGGATATGTACTCTGTTCAGTCCTCGAGAGGGCCTACTCCTAGACCTT 1017
Query 1021 CGAATTTTGAGGAGAGTTGTGCTATGGCTTCTTCGCCAAGATTCGGGTATTACCCGGGAG 1080
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 CGAATTTTGAGGAGAATTGTGCTATGGCTTCTTCGCCTAGATTCGGGTATTACCCGGGAG 1077
Query 1081 GAGCTCCCGGGTCGTACCCAGCTCCTAATCCGGAGTTTTCTACCGGTAATAAAACCGGTA 1140
|||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1078 ---CTCCTGGGTCGTACCCAGCTCCGAATCCGGAGTTTTCTACTGGTAATAAAA----T- 1129
Query 1141 GTAAAGCTCCAAAAGAGAATCATCATCATGTAGGAAAATCAAATAGTAATGATGCTAAGG 1200
| | | |||||||||||| |||| ||| |||||||| |||||| ||||||||||||
Sbjct 1130 -T----C-C-AAAAGAGAATCACCATCCTGTCGGAAAATCGAATAGTCATGATGCTAAGG 1182
Query 1201 AGCTTCATATGTTTGTTTGGGGATCCAACGGATCACCCGTTTCGGACCGAGCTGGTCTTC 1260
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1183 AGCTTCATATGTTTGTTTGGGGATCTAACGGGTCACCCGTTTCGGACCGAGCGGGTCTTC 1242
Query 1261 AAGTTGATAATGGAGCCAATGAACAAGTCGGAAAATCCGATCAAGGCGGTGCAAAAGAGA 1320
||||||||| || |||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 1243 AAGTTGATACTGCAGCCAATGAACAAGTCGGAAAATCGGATCAAGGCTGTGCCAAAGAGA 1302
Query 1321 TTCGAATGTTGATCTCTGATCATACTCAAAATGGTGAAAACAAAGCTGGTCCGATGAACG 1380
||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 1303 TTCGAATGTTGATCTCTGATCCTACTCAGAACGGTGAAAACAAAGCTGGTCCGATGAACG 1362
Query 1381 GGGACTATGGCGGGGAAGAAGAGTCGGAGAGGGTAAAGGAAGTGCCTAACGGACTACACA 1440
| |||||||| | |||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 1363 GAGACTATGGTTGCGAAGAAGAGTTGGAGAGAGTCAAGGAAGTGCCTAACGGACTACACA 1422
Query 1441 AGCTTCGGTGTAACTCCACAGCAGAGCTAAACCCTAAAGAAGCTATAGAAACGGGTGAAA 1500
|||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 1423 AGCTTCGGTGTAACTCAACGGCGGAGCTAAACCCTAAAGAAGCTATAGAAACCAGTGAAA 1482
Query 1501 CTGTACCGGTAAAACATATGCCACCAGCGAGTGTGATGACTCGGCTGATATTGATAATGG 1560
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1483 CTGTACCGGTAAAACATATGCCGCCGGCAAGTGTGATGACTCGGCTGATATTGATAATGG 1542
Query 1561 TGTGGAGGAAACTCATAAGAAACCCAAACACTTACTCTAGTCTCATTGGTCTCATTTGGG 1620
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1543 TGTGGAGGAAACTGATAAGGAACCCAAACACTTACTCTAGTCTCATTGGTCTGATTTGGG 1602
Query 1621 CTCTTGTTGCTTTCAGGTGGGATGTGGCAATGCCTAAAATTATTCAACAATCAATCTCAA 1680
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1603 CTCTTGTCGCGTTCAGGTGGGATGTGGCAATGCCTAAAATCATTCAACAATCAATCTCAA 1662
Query 1681 TTCTTTCTGATGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGC 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TTCTTTCTGATGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGC 1722
Query 1741 AACCGAAATTAATTGCTTGCGGAAATTCGACGGCGACTTTTGCGATGGCGGTGAGATTCT 1800
|||| |||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||
Sbjct 1723 AACCTAAATTAATTGCTTGTGGAAATTTGACGGCCACTTTTGCAATGGCGGTGAGATTCT 1782
Query 1801 TTACTGGACCAGCGGTAATGGCCGTGGCAGCAATGGCTATTGGATTACGTGGAGACCTAT 1860
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1783 TTACTGGACCAGCGGTGATGGCCGTAGCAGCAATGGCTATCGGATTACGTGGAGACCTAT 1842
Query 1861 TGCGTGTGGCCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAA 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 TGCGTGTGGCCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAA 1902
Query 1921 AAGAGTATAATGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTTGGAATGCTTATCG 1980
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1903 AAGAGTATAACGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTCGGAATGCTTATCG 1962
Query 1981 CACTACCGATTACACTTGTTTACTACATTTTACTCGGGCTATAAGCTCT-TCAATGGAGA 2039
|||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1963 CACTACCGATCACACTTGTTTACTACATTTTACTCGGGCTATAAGCTCTGT-AATGGAGG 2021
Query 2040 AGTTCTGCTTGGCTGAAGAGGATAAAGAGAAACAAGATAATTC--C-AAGATTAGTGGAA 2096
||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 2022 AGTTCCGCTTGGCTGAAGAGGATAAAGAGAAGCAAGATAATTCATCCAAGATTAGTGGAA 2081
Query 2097 CGCAACTAGAAAATGTAATGTAACACGAAATGTAGTAAAT--TTAAAGGGACCAAGATTT 2154
||||||||| |||||||||||||||||| || ||||||| |||||| |||||||||||
Sbjct 2082 CGCAACTAGCAAATGTAATGTAACACGAGATTTAGTAAAAAATTAAAGCGACCAAGATTT 2141
Query 2155 GATTTGAGGATCCAAAAACCCTTTTCTTGTCTATATATTTTCTAGAGATTATTTGAG 2211
||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 2142 GATTTGAGGATCCAAAAACGCTTTTCTTGTCTATATATCTTCTAGAGATTACTTGAG 2198
> Ahg908693 jgi|Araly1|908693|Al_scaffold_0002_1774
Length=1929
Score = 529 bits (286), Expect = 4e-149
Identities = 439/515 (85%), Gaps = 2/515 (0%)
Strand=Plus/Plus
Query 1511 AAAACATATGCCACCAGCGAGTGTGATGACTCGGCTGATATTGATAATGGTGTGGAGGAA 1570
|||| ||||||| || || || |||||||| |||||||| |||||||||||||||||||
Sbjct 1416 AAAAAATATGCCGCCGGCTAGCGTGATGACAAGGCTGATACTGATAATGGTGTGGAGGAA 1475
Query 1571 ACTCATAAGAAACCCAAACACTTACTCTAGTCTCATTGGTCTCATTTGGGCTCTTGTTGC 1630
|||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 1476 ACTCATCAGAAACCCAAACACTTACTCTAGTCTCATTGGACTTATTTGGGCTCTCGTCGC 1535
Query 1631 TTTCAGGTGGGATGTGGCAATGCCTAAAATTATTCAACAATCAATCTCAATTCTTTCTGA 1690
|||| ||||| | ||||||||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct 1536 TTTCCGGTGGCACGTGGCAATGCCCAAAATCATTCAACAATCTATCTCCATTCTATCTGA 1595
Query 1691 TGCTGGTCTTGGTATGGCAATGTTCAGTTTGGGGTTGTTCATGGCATTGCAACCGAAATT 1750
|||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1596 TGCTGGTCTTGGAATGGCAATGTTTAGTTTGGGGTTGTTCATGGCGTTGCAACCCAAATT 1655
Query 1751 AATTGCTTGCGGAAATTC-GACGGCGACTTTTGCGATGGCGGTGAGATTCTTTACTGGAC 1809
||| ||||| || || || | ||| || |||||||||||||| |||||| |||| || |
Sbjct 1656 AATCGCTTGTGGGAACTCCGT-GGCAACGTTTGCGATGGCGGTTAGATTCCTTACGGGTC 1714
Query 1810 CAGCGGTAATGGCCGTGGCAGCAATGGCTATTGGATTACGTGGAGACCTATTGCGTGTGG 1869
| || || ||||| || || || || || || ||||||||||| || || ||||||| |
Sbjct 1715 CGGCCGTGATGGCGGTTGCTGCTATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCG 1774
Query 1870 CCATTGTTCAAGCTGCATTGCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAAGAGTATA 1929
| || ||||| || ||||| |||||||| || ||||| |||||||||||||| ||||| |
Sbjct 1775 CTATAGTTCAGGCCGCATTACCTCAAGGAATTGTGCCCTTTGTGTTTGCAAAGGAGTACA 1834
Query 1930 ATGTTCATCCCGCAATCTTGAGTACAGGGGTAATATTTGGAATGCTTATCGCACTACCGA 1989
|||||||||| || || || ||||||||||||||||| ||||||||||| || || ||||
Sbjct 1835 ATGTTCATCCTGCTATTTTAAGTACAGGGGTAATATTCGGAATGCTTATAGCGCTTCCGA 1894
Query 1990 TTACACTTGTTTACTACATTTTACTCGGGCTATAA 2024
| || || |||||||||||| |||||||| |||||
Sbjct 1895 TCACGCTGGTTTACTACATTCTACTCGGGTTATAA 1929
> Ahg476492 jgi|Araly1|476492|fgenesh2_kg.2__1622__AT1G73590.1
Length=2252
Score = 355 bits (192), Expect = 7e-97
Identities = 501/647 (77%), Gaps = 33/647 (5%)
Strand=Plus/Plus
Query 148 CTCCGGCGAACAACAATATGATCACATGGC-AC-GACCTCTA-CACCGTCCTCACGGCGG 204
||||||||||||| || ||||| | | ||| | || |||| || |||| | |||||
Sbjct 88 CTCCGGCGAACAA-AAGATGAT-A-ACGGCGGCGGATTTCTACCA-CGTCATGACGGCTA 143
Query 205 TGATACCACTCTACGTAGCCATGATCCTCGCTTACGGCTCAGTCCGGTGGTGGAAAATCT 264
|| | || | ||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 144 TGGTTCCGTTATACGTAGCCATGATCCTCGCTTACGGCTCCGTCAAATGGTGGAAGATCT 203
Query 265 TCTCACCAGACCAATGTTCCGGCATAAACCGCTTCGTCGCTATTTTCGCCGTCCCTCTTC 324
|| ||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| |
Sbjct 204 TCACACCAGACCAATGCTCCGGCATAAACCGTTTCGTCGCTCTCTTCGCCGTTCCTCTCC 263
Query 325 TCTCTTTCCACTTCATCTCCTCAAACAATCCTTACGCAATGAATCTCCGATTCATCGCAG 384
||||||||||||||||| || | ||||| |||||||| ||||| ||||| ||| |||| |
Sbjct 264 TCTCTTTCCACTTCATCGCCGCTAACAACCCTTACGCCATGAACCTCCGTTTCCTCGCCG 323
Query 385 CCGATACACTCCA-AAAACTAATCATGCTCACTCTCCTAATCATCTGG-GCTAACTTCA- 441
| ||| | ||||| |||| | || | ||| |||| || || ||||| || |||| ||
Sbjct 324 CAGATTCTCTCCAGAAAA-TCATTGTCCTCTCTCTACTCTTCCTCTGGTGCAAACT-CAG 381
Query 442 CTCGCTCCGG-TAGTCTTGAATGGAGCATCACAATCTTCTCTCTTTCAACACTTCCCAAC 500
| ||| ||| | || | || |||| ||| || |||||||||| || || |||||||||
Sbjct 382 C-CGCAACGGCTCGT-TAGATTGGACCATAACTCTCTTCTCTCTCTCGACTCTTCCCAAC 439
Query 501 ACTCTCGTTATGGGAATACCTCT-CTTGATCGCCATGTACGGAGAATAT-TCCGGCTCAC 558
||||| || ||||| || ||||| || | || |||||||| || | | |||||| ||
Sbjct 440 ACTCTAGTCATGGGGATTCCTCTACTCAAAGGC-ATGTACGGTGATT-TCTCCGGCG-AC 496
Query 559 -TCATGGTTCAGATCGTTGTTCTTCAGTGTATAATCTGGTACACGCTTCTT-CTCTTTCT 616
|||||||||| |||||||||||||| ||||| || |||||||| || | | ||||||||
Sbjct 497 CTCATGGTTCAAATCGTTGTTCTTCAATGTATCATTTGGTACACACT-CATGCTCTTTCT 555
Query 617 -TTTCGAATACAGAGGAGCTAAGATCTTGATCATG-GAACAGTTTCCAGAGACTGGTGCT 674
||| || ||| | || || ||| | |||||| | || |||||||| || || | ||
Sbjct 556 CTTT-GAGTACCGTGGCGCGAAGCTTTTGATC-TCCGAGCAGTTTCCGGACACAGCTGGA 613
Query 675 TCGATTGTATCG-TTCAAAGTTGAGTCCGATGTTGTTTCTTTAGATGGACATGATTTTCT 733
|| ||||| ||| |||| ||||| ||||| || | |||||||||||| | || ||
Sbjct 614 TCTATTGTTTCGATTCAT-GTTGATTCCGACATTATGTCTTTAGATGGA-A-GACAACCT 670
Query 734 T-G-AAACTGATGCTCAAATCGGTGACGATGGTAAGCTTCATGTTAC 778
| | ||||||| ||| | || || ||||| ||||||||||||||
Sbjct 671 TTGGAAACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTTAC 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83379546305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5