BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23100.1
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472563 jgi|Araly1|472563|fgenesh2_kg.1__2517__AT1G23100.1 667 0.0
> Ahg472563 jgi|Araly1|472563|fgenesh2_kg.1__2517__AT1G23100.1
Length=501
Score = 667 bits (361), Expect = 0.0
Identities = 449/490 (92%), Gaps = 11/490 (2%)
Strand=Plus/Plus
Query 38 CAGAGCAACATTTTCGTAATCCGATCTCCGTCGTCGTCGTCGAATCAGATAAAAATGGCG 97
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 20 CAGAGCAACATTTTCGTAATCCGATCTCCGTCGTCGTCGTCGAAGCAGAGAGAAATGGCG 79
Query 98 AAGCGTTTGATCCCGACTCTCAACCGTGTATTGGTGGAGAAGATTCTCCCACCGTCAAAG 157
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 80 AAGCGTTTGATCCCGACTCTAAACCGTGTATTGGTGGAGAAGATTCTTCCACCATCAAAG 139
Query 158 ACCGTCTCCGGCATTCTCCTACCGGAGAAATCATCTCAGTTGAATTCCGGGAGAGTTATA 217
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct 140 ACCGTCTCCGGCATTCTCTTACCGGAGAAATCATCTCAGTTGAATTCCGGGAAAGTGATA 199
Query 218 GCAGTTGGTCCTGGAGCTAGAGACAGAGCAGGGAATCTAATTCCGGTTTCGGTTAAGGAA 277
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 200 GCAGTTGGTCCTGGAGCTAGAGACAGAGCCGGGAATCTAATTCCGGTTTCGGTTAAAGAA 259
Query 278 GGAGACAATGTTCTTTTGCCTGAATTTGGCGGTACTCAAGTTAAGCTTGGAGAGAAAGAG 337
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 260 GGGGACAATGTTCTTTTGCCTGAATTTGATGGTACTCAAGTTAAGCTTGGAGAGAAAGAG 319
Query 338 TTCCTATTGTATAGGGATGAAGATATCATGGCTACACTTCACGAGTGATGTGTTAAAGAG 397
||||| |||||||||||||||||||| |||| ||| |||||||| ||||||| ||||||
Sbjct 320 TTCCTTTTGTATAGGGATGAAGATATTATGGGTACTCTTCACGATTGATGTGGGAAAGAG 379
Query 398 ATAGAATT-TAT-GATTCCTCTTTGTTTTGT-TGTCTGCAATTGTCTGACATTTGGATCA 454
|||||||| | | | || ||| | | || | | || | || || ||| |||||||||
Sbjct 380 ATAGAATTGTTTTG-TTG-TCTGCGATA-GTCTAT-TG-A-TT-TC-GACTTTTGGATCA 431
Query 455 ATTGTTATGATTGTTCTTCACTGTTGGCAACAAGTTCTTATAATTCAATAATCTCTTTTG 514
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 432 ATTGTTATGATTGTTCTTCATTGTTGGCAACAAGTTCTTATAATTCAATAATCTCTTTTG 491
Query 515 TTTGGGAATG 524
||||||||||
Sbjct 492 TTTGGGAATG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19077794500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5