BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23110.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472566 jgi|Araly1|472566|fgenesh2_kg.1__2520__AT1G23110.3 1181 0.0
Ahg472563 jgi|Araly1|472563|fgenesh2_kg.1__2517__AT1G23100.1 54.7 2e-06
> Ahg472566 jgi|Araly1|472566|fgenesh2_kg.1__2520__AT1G23110.3
Length=855
Score = 1181 bits (639), Expect = 0.0
Identities = 788/856 (92%), Gaps = 26/856 (3%)
Strand=Plus/Plus
Query 201 AGCAATCAAATTTTAGAACAGAACAAGGGAGACAACAAAGTAGTTTGATTATTCTGGTGG 260
||||||||||||||||||| || || ||| ||||||||||||| |||| |||||||
Sbjct 20 AGCAATCAAATTTTAGAAC--AA-AA--GAGGCAACAAAGTAGTTGGATTGTTCTGGTAT 74
Query 261 CGTATAGATAAATGTTGGTTGTCTGTGGTTT-AGCAAGATTACCATGAGTCTGCAAAATG 319
|||||||| | || |||||| | |||||||| || |||||| |||||| || |||||||
Sbjct 75 CGTATAGAGAGATTTTGGTTCTGTGTGGTTTCAGGAAGATT-TCATGAGCCTCCAAAATG 133
Query 320 TATCAAAGTCGAGC---AATGCCCTTGAGGGTATCCACGGGGTTCATGTCACGTCTCATT 376
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 134 TATCAAAGTCAAGCAATAATGCCCTTGAGGGTATCCATGGGGTTCATGTCACGTCTCATT 193
Query 377 CTCCTTTCTCATTTGAGAAGACAACTCAAGTTAGTGACTTTCAGACCAACACCAAATCCT 436
| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 194 CGCCCTTCTCATTTGAGAAGACAACTCAAGTTAGTGAC--T----------CCAAATCCA 241
Query 437 CTGTCATGGAATCAAATCAAAGACTTTC-CATCGAACGTTTTTGGCAGCAAAGACCTCCA 495
| | ||||||||||||||| |||| | | |||||||||||||||||| || |||||||||
Sbjct 242 CAGACATGGAATCAAATCAGAGAC-TGCTCATCGAACGTTTTTGGCAACAGAGACCTCCA 300
Query 496 TGCTTAAGGCCAATCTGTTGCAGCATTCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 555
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TGCTTAAGGCCAATCTGTTGCAGCATCCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 360
Query 556 AATGTGGCTACTTCACTTCCTTTCATCTTCCTCGGAATGCAGGCACCAAGGAAGAATCTG 615
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 361 AATGTGGCTACTTCACTTCCTTTCATATTCCTCGGTTTGCAGGCACCAAGGAAGAATCTG 420
Query 616 AACACAAAGGTGTACGCAAACTCCCTAATTGGAGTTGGAATTGCGTCGAGTCTGTATCAT 675
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 421 AACACAAAGGTGTACGCAAACTCCTTAATTGGAGTTGGAATTGCATCGAGTCTGTATCAT 480
Query 676 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 540
Query 736 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAATTTCTGATGGCTGCA 795
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 541 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAGTTTTTGATGGCTGCA 600
Query 796 TCAGCTTTAGTTCTACCTTTTCAACCTCTCATGGTCTCTGCCGTTCACACTGGAATGATG 855
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 601 TCAGCTTTAGTTCTACCTTTTCAGCCTCTCATGGTCTCTGCCGTTCACACCGGAATGATG 660
Query 856 GAGGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACAGCTCATAACGTA 915
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GAAGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACCGCTCATAACGTA 720
Query 916 CACAAGATGTCTTCCTTGCTAGGAGGTGCTCT-GTTCATAGCTGATGATTTCTTCCCCGA 974
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 721 CACAAGATGTCTTCATTGCTAGGAGGTGC-CTTGTTCATAGCTGATGATTTCTTCCCCGA 779
Query 975 GACACCTTTCCTTCACGCAGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 1034
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GACACCATTCATTCACGCCGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 839
Query 1035 TAAACTTCTTGAGTAG 1050
||| ||||||||||||
Sbjct 840 TAAGCTTCTTGAGTAG 855
> Ahg472563 jgi|Araly1|472563|fgenesh2_kg.1__2517__AT1G23100.1
Length=501
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1183 CATTCCCAAACAAAAGAGATTATTGAATT 1211
|||||||||||||||||||||||||||||
Sbjct 501 CATTCCCAAACAAAAGAGATTATTGAATT 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5