BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23120.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472567 jgi|Araly1|472567|fgenesh2_kg.1__2521__AT1G23120.1 846 0.0
> Ahg472567 jgi|Araly1|472567|fgenesh2_kg.1__2521__AT1G23120.1
Length=657
Score = 846 bits (458), Expect = 0.0
Identities = 582/641 (91%), Gaps = 12/641 (2%)
Strand=Plus/Plus
Query 1 ATGCTTTTTGTTATGGTAAAGATAAACAACAGAAAAGTCAGCGTGAGAGACT-GGATTAT 59
|||||||||||||||||||||||| | |||| || || |||||| | |||| || |||
Sbjct 1 ATGCTTTTTGTTATGGTAAAGATAGATAACACAAGAGCCAGCGTCATTGACTAGG-GTAT 59
Query 60 CTTAGAGCCATGGCTGGTGTCCAGACTCTCGAATTAGAGATCCAAGTGAATATGACCGCC 119
| || ||||||| |||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 60 CGTAAAGCCATGCCTGGTGTCCAGACTCTCGAACTGGAGATCCAAGTGAACATGACCGCT 119
Query 120 GAGAGATTCTTCAAGACTTTCAAGAAGAAAGAAGGAAATTTCACGGACAAGACAGAGGCA 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGAGATTCTTCAAGACTTTCAAAAAGAAAGAAGGAAATTTCACGGACAAGACAGAGGCA 179
Query 180 GTTTATGTTCATCGTGACGATCCCACATCCAACTCCTCTATTCAGATCTGGAATTTCATC 239
|||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTCTGTTGAACGTGGCGATCCCACATCCAACTCCTCTATTCAGATCTGGAATTTCATC 239
Query 240 GTTGATGGAAAAATGGAGCAGATCAAAGAGAAGATAGACGTAGATGAAGAGAACAAGTCG 299
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 240 GTTGATGGAAAGATGGAGCAGATCAAAGAGAAGATAGAGGTAGACGAAGAGAACAAGTCG 299
Query 300 GTGTCTTTCTTAGCTCTTGAAGGAGATGTGTTAAAGCAATATAAGAGCTATAAGATAACA 359
|| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 GTATCTTTCGTAGCTCTTGAAGGAGATGTGTTGAAGCAATATAAGAGCTATAAGATAACA 359
Query 360 CTTGACGTTGTTCCTAA-GGATCATAAAGTTTGTATTGCAAAGTGGACATGGGAATACGA 418
||||||||||||||||| || | || ||||||||||||| ||||||||||||||||||||
Sbjct 360 CTTGACGTTGTTCCTAAAGG-TGATCAAGTTTGTATTGCCAAGTGGACATGGGAATACGA 418
Query 419 GAAGTTAAATGACGACGTTCCTCCCCCTACCAGATACACTGCGTTCGTTGAAGATTACAC 478
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 GAAGCTAAACGACGACGTTCCTCCCCCTACCAGATACACTGCGTTCGTTGCAGATTACAC 478
Query 479 ACGCGACCTCGAGACTAGATTGTTGTCTGAATCATGAAT-ATATCATCAATGTCTCCGAG 537
|||||||||||||||||||||||||| |||||||||| | ||||||| |||||||| |||
Sbjct 479 ACGCGACCTCGAGACTAGATTGTTGTTTGAATCATGA-TCATATCATTAATGTCTCTGAG 537
Query 538 TTCCTTGTCAAATAAATCAGATCTTGCTATG-AAAATAATATTTTTATAAATTTT-CATA 595
|||||||| | ||||||||||||||| |||| |||| || || ||||| | || |
Sbjct 538 TTCCTTGTTATATAAATCAGATCTTGTTATGCAAAAAAA-ATAAA-ATAAAATACACAGA 595
Query 596 AATGATGACATGAAACAAATCGCATATTAACTAATATGAAA 636
||||||||||||||||||||||||| | |||||||||||||
Sbjct 596 AATGATGACATGAAACAAATCGCAT-T-AACTAATATGAAA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5