BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23130.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335552 jgi|Araly1|335552|fgenesh1_pg.C_scaffold_1002117 479 1e-134
Ahg335545 jgi|Araly1|335545|fgenesh1_pg.C_scaffold_1002110 274 7e-73
Ahg912175 jgi|Araly1|912175|Al_scaffold_0001_2429 235 3e-61
> Ahg335552 jgi|Araly1|335552|fgenesh1_pg.C_scaffold_1002117
Length=456
Score = 479 bits (259), Expect = 1e-134
Identities = 416/486 (86%), Gaps = 33/486 (7%)
Strand=Plus/Plus
Query 52 ATGGCACAAGCTACGCGTCAGTCTTCTCTACAAGGGGAACTTGAGGTAGATATTGAGATC 111
||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1 ATGGCACAAGCTATGCGTCAGTCTTCTCTGCAAGGGGAGCTTGAGGTAGATGTTGAGATC 60
Query 112 AAAGCATCGGCAAAGAAGTTCCATCACATGCTCTCTGGAAGACCACAAGATGTTGCGAAA 171
|||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| |||
Sbjct 61 AAAGCATCTGCAAAGAAGTTCCATCAGATGCTCTCTAGAAGACCACAAGATATTGCAAAA 120
Query 172 GCCACTCCTGACATCCAGGGATGTGCTTTGCATGAGGGAGAGTTTGGCAAAG-TTGGCAG 230
||||||||||||||||| ||||||||||||||||| || || | || ||||||
Sbjct 121 GCCACTCCTGACATCCAAGGATGTGCTTTGCATGA-GG-GA-----G---AGTTTGGCA- 169
Query 231 TGTCATATTCTGGAACTATGCTATTGATGGGCAGCCCAAGGTGGCGAGGGAGAGGATCGA 290
| | | | | || | |||||||||| ||||||| || ||||||||||||
Sbjct 170 ----A-AGT-T-G------GC-A---ATGGGCAGCCAAAGGTGGGGAAGGAGAGGATCGA 212
Query 291 GGCAGTGGATCAGGAGAAGAATCTGTTAGTGCTCAGGGTAATAGATGGAGATCTGACGAA 350
||||||||||||||||||||||||| ||| | |||||||| ||||||||||| || |||
Sbjct 213 GGCAGTGGATCAGGAGAAGAATCTGATAGCGTTCAGGGTAGTAGATGGAGATATGTTGAA 272
Query 351 AGAGTTCAAGAGCTTCTTGGTCACTATCCAGGCAACCCCAAAGCTAAGAGGACCGGGAAG 410
| |||||||||||||||| | ||| |||||||||||||||||||||||||| | |||||
Sbjct 273 CGGGTTCAAGAGCTTCTTGATTACTGTCCAGGCAACCCCAAAGCTAAGAGGATCAGGAAG 332
Query 411 TGTGGTTAAGTGTCACTTAAAATATGAGAGGATTGACGAGAAGGTGGCTCCTCCGGAGAA 470
|||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||
Sbjct 333 TGTGGTTAAGTGTCACTTCAAATATGAGAGGATTGACGAGGAGGTGGCTCATCCGGAGAA 392
Query 471 GCTGCTCGAGTTGTTTGCCAAG-CTAACCGAAT-CAATGGACGAAATGCTTTTGTCCGAA 528
|||||||| ||||||| |||| | | || || || |||||||||||||||||||||||
Sbjct 393 GCTGCTCGCCTTGTTTGTCAAGAC-AGCCAAAGACA-TGGACGAAATGCTTTTGTCCGAA 450
Query 529 GTCTAG 534
||||||
Sbjct 451 GTCTAG 456
> Ahg335545 jgi|Araly1|335545|fgenesh1_pg.C_scaffold_1002110
Length=318
Score = 274 bits (148), Expect = 7e-73
Identities = 168/178 (94%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 52 ATGGCACAAGCTACGCGTCAGTCTTCTCTACAAGGGGAACTTGAGGTAGATATTGAGATC 111
||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1 ATGGCACAAGCTATGCGTCAGTCTTCTCTGCAAGGGGAGCTTGAGGTAGATGTTGAGATC 60
Query 112 AAAGCATCGGCAAAGAAGTTCCATCACATGCTCTCTGGAAGACCACAAGATGTTGCGAAA 171
|||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| |||
Sbjct 61 AAAGCATCTGCAAAGAAGTTCCATCAGATGCTCTCTAGAAGACCACAAGATATTGCAAAA 120
Query 172 GCCACTCCTGACATCCAGGGATGTGCTTTGCATGAGGGAGAGTTTGGCAAAGTTGGCA 229
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCACTCCTGACATCCAAGGATGTGCTTTGCATGAGGGAGAGTTTGGCAAAGTTGGCA 178
> Ahg912175 jgi|Araly1|912175|Al_scaffold_0001_2429
Length=291
Score = 235 bits (127), Expect = 3e-61
Identities = 169/189 (89%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 348 GAAAGAGTTCAAGAGCTTCTTGGTCACTATCCAGGCAACCCCAAAGCTAAGAGGACCGGG 407
||||| |||||||||||||||| | ||| |||||| ||||||||||||||||||| | ||
Sbjct 105 GAAAGGGTTCAAGAGCTTCTTGATTACTGTCCAGGAAACCCCAAAGCTAAGAGGATCAGG 164
Query 408 AAGTGTGGTTAAGTGTCACTTAAAATATGAGAGGATTGACGAGAAGGTGGCTCCTCCGGA 467
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct 165 AAGTGTGGTTAAGTGTCACTTCAAATATGAGAGGATTGACGAGGAGGTGGCTCATCCGGA 224
Query 468 GAAGCTGCTCGAGTTGTTTGCCAA-GCTAACCGAATCA-ATGGACGAAATGCTTTTGTCC 525
||||||||||| |||||||| ||| || | | || | |||||||||||||||||||||
Sbjct 225 GAAGCTGCTCGCGTTGTTTGTCAAGGC-ATTC-AAAGACATGGACGAAATGCTTTTGTCC 282
Query 526 GAAGTCTAG 534
|||||||||
Sbjct 283 GAAGTCTAG 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5