BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23140.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472569 jgi|Araly1|472569|fgenesh2_kg.1__2523__AT1G23140.1 843 0.0
> Ahg472569 jgi|Araly1|472569|fgenesh2_kg.1__2523__AT1G23140.1
Length=616
Score = 843 bits (456), Expect = 0.0
Identities = 525/559 (94%), Gaps = 2/559 (0%)
Strand=Plus/Plus
Query 1 TAAGAATCCAAGTACAAGACAAAAGACAAGAGTCCGAGGAGACATGGAGAATCTGGTGGG 60
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TAAGAACCCAAGAACAAGACAAAAGACAAGAGTCGGAGGAGACATGGAGAATCTGGTGGG 60
Query 61 ACTTCTTAGAA-TCAGAGTGAAAAGAGGGATTAATCTTGTTAGTCGTGATTCTAATACCA 119
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTCTTAGAATTC-GAGTGAAAAGAGGGATTAATCTTGTTAGTCGTGATTCTAATACCA 119
Query 120 GCGACCCTTTCGTCGTCGTAACCATGGGTTCTCAGAAATTGAAGACACGTGGTGTGGAAA 179
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 120 GCGACCCTTTCGTCGTCGTTACCATGGGTTCTCAGAAATTGAAGACTCGTGGTGTGGAAA 179
Query 180 ATAGCTGCAACCCTGAGTGGGACGATGAATTGACGCTTGGAATCAATGATCCTAATCAAC 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 ATAGCTGCAACCCTGAGTGGGACGATGAATTGACGCTTGGAATCAATGATTCTAATCAAC 239
Query 240 ATGTGACTCTCGAAGTGTATGATAAAGATACGTTCACTTCCCATGACCCGATGGGAGATG 299
||||| ||||||||||| |||||| ||||| |||||||| |||||| ||||||||||||
Sbjct 240 CTGTGATTCTCGAAGTGTTTGATAAGGATACATTCACTTCGCATGACACGATGGGAGATG 299
Query 300 CGGAAATAGACATCAAGCCGTTTTTCGAGGTTCAAGGAACGGATATTCAAGAACTCACTA 359
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 300 CGGAAATAGACATCAAGCCGTTTTTCGAGGCTCAAGGAACGGATATTCAAGAACTCTCTG 359
Query 360 ATGGAACCGAGATCCGTAGAGTGAAGCCGAGTGGAGATAACTGTTTGGCTGAAGAGAGTA 419
||||||||||||| | ||||||||||||||||||||| ||||| || ||| |||||||||
Sbjct 360 ATGGAACCGAGATACATAGAGTGAAGCCGAGTGGAGACAACTGCTTAGCTAAAGAGAGTA 419
Query 420 GGATCATCTTCAGTAATGGAAAGATTCTTCAAGACATGATTCTCCAGCTGAGAAATGTAG 479
| |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 420 GAATCATCTTCAGTAATGGAAAGATTGTCCAAGACATGATTCTCAAGCTGAGAAATGTAG 479
Query 480 AGAGTGGTGAGGTTGAGATCCAAATCGAGTGGATCAATGTTACTGGTTCAAGCGATTTTT 539
| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||
Sbjct 480 AAAGTGGTGAGGTTGAGGTTCAAATCGAGTGGATCGATGTTACTGGTTCAAGCGATCTTT 539
Query 540 GAAGGAGAAATGTATATAG 558
||||||||||||||| |||
Sbjct 540 GAAGGAGAAATGTATGTAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5