BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23145.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value Ahg472570 jgi|Araly1|472570|fgenesh2_kg.1__2524__AT1G23145.1 344 2e-94 > Ahg472570 jgi|Araly1|472570|fgenesh2_kg.1__2524__AT1G23145.1 Length=312 Score = 344 bits (186), Expect = 2e-94 Identities = 274/313 (88%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 ATGGAAGC---AAGACATATGCTCGTGACAATACTCTTGTTATCATTTGTGTTTATGAAT 57 |||||||| ||||| |||||||||| |||||||| ||||||||| ||||||||||||| Sbjct 1 ATGGAAGCAATAAGACCTATGCTCGTGGCAATACTCGTGTTATCATGTGTGTTTATGAAT 60 Query 58 ATCATGAAGGTGGAAGCTCAAAAAGTAATTGGATATCCAGCAATAGGACGTGATGGTGCA 117 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 ATCATGAAGGTGGAAGCTCAAAAAGAAATTGGATATCCAGCAATAGGACGTGATGGTGCA 120 Query 118 CGTGGATGTAGTCCTAAAGATCCTTCA-T-----GTCCAC-AA--CAACCGGAGAAGCCG 168 | |||||||||||||||| |||||||| | ||| || || ||||| ||||| ||| Sbjct 121 CATGGATGTAGTCCTAAATATCCTTCAGTACCATGTCGACCAAAACAACCAGAGAATCCG 180 Query 169 TACAAGCGAGGATGTGAGAAAATTACAAGATGTGAACGTGATCGC-----CG-TAAGCAA 222 ||||||||||||||||||||||||||||||||| |||| ||| || || ||||||| Sbjct 181 TACAAGCGAGGATGTGAGAAAATTACAAGATGTAAACGCGATGGCGATGGCGATAAGCAA 240 Query 223 GCC-CATCTTCGGAATCCTCGAAAAGTACTAGATGTAGTCGCAGTGATGGCAAAGGCCAA 281 || | ||||| |||||||| ||||||||||||||||||||| |||||| |||||||||| Sbjct 241 GCAGC-TCTTCTGAATCCTCAAAAAGTACTAGATGTAGTCGCGGTGATGACAAAGGCCAA 299 Query 282 GCAGCTCTACTGA 294 |||||||| |||| Sbjct 300 GCAGCTCTTCTGA 312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10302009030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5