BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23145.1
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472570 jgi|Araly1|472570|fgenesh2_kg.1__2524__AT1G23145.1 344 2e-94
> Ahg472570 jgi|Araly1|472570|fgenesh2_kg.1__2524__AT1G23145.1
Length=312
Score = 344 bits (186), Expect = 2e-94
Identities = 274/313 (88%), Gaps = 20/313 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGC---AAGACATATGCTCGTGACAATACTCTTGTTATCATTTGTGTTTATGAAT 57
|||||||| ||||| |||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1 ATGGAAGCAATAAGACCTATGCTCGTGGCAATACTCGTGTTATCATGTGTGTTTATGAAT 60
Query 58 ATCATGAAGGTGGAAGCTCAAAAAGTAATTGGATATCCAGCAATAGGACGTGATGGTGCA 117
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATGAAGGTGGAAGCTCAAAAAGAAATTGGATATCCAGCAATAGGACGTGATGGTGCA 120
Query 118 CGTGGATGTAGTCCTAAAGATCCTTCA-T-----GTCCAC-AA--CAACCGGAGAAGCCG 168
| |||||||||||||||| |||||||| | ||| || || ||||| ||||| |||
Sbjct 121 CATGGATGTAGTCCTAAATATCCTTCAGTACCATGTCGACCAAAACAACCAGAGAATCCG 180
Query 169 TACAAGCGAGGATGTGAGAAAATTACAAGATGTGAACGTGATCGC-----CG-TAAGCAA 222
||||||||||||||||||||||||||||||||| |||| ||| || || |||||||
Sbjct 181 TACAAGCGAGGATGTGAGAAAATTACAAGATGTAAACGCGATGGCGATGGCGATAAGCAA 240
Query 223 GCC-CATCTTCGGAATCCTCGAAAAGTACTAGATGTAGTCGCAGTGATGGCAAAGGCCAA 281
|| | ||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct 241 GCAGC-TCTTCTGAATCCTCAAAAAGTACTAGATGTAGTCGCGGTGATGACAAAGGCCAA 299
Query 282 GCAGCTCTACTGA 294
|||||||| ||||
Sbjct 300 GCAGCTCTTCTGA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10302009030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5