BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23149.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921354 jgi|Araly1|921354|scaffold_102635.1 682 0.0
Ahg921353 jgi|Araly1|921353|scaffold_102634.1 248 5e-65
> Ahg921354 jgi|Araly1|921354|scaffold_102635.1
Length=466
Score = 682 bits (369), Expect = 0.0
Identities = 430/458 (94%), Gaps = 10/458 (2%)
Strand=Plus/Plus
Query 395 aaaaGATGTTGCTTTACAAG-A-AA-AAGAATCAGATTGTTAAAGGAAACAGAATCTTGA 451
|||||||||||||||||||| | || || |||||||||||||||||||||||||||||||
Sbjct 16 AAAAGATGTTGCTTTACAAGAAGAAGAATAATCAGATTGTTAAAGGAAACAGAATCTTGA 75
Query 452 TCAGCGTAACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAGGTGATC 511
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 76 TCAGCGTTACGTTTCTTGGTAGTGCTGGTCCGATCCGGTTCGTTGCTAATGAAAGTGATC 135
Query 512 TTGTTGCATCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCTA 571
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 136 TTGTTGCAGCTGTGATTGATACTGCTTTGAAATGTTATGCTCGTGAAGGTCGTCTTCCGA 195
Query 572 TTCTTGGATCTGATTTCAACGATTTTGTTTTTTATTGTCCAATGGTTGGACCTGGAGCTT 631
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 196 TTCTTGGTTCTGATTTCAACGATTTTGTCTTTTATTGTCCTATGGTTGGACCTGGAGCTT 255
Query 632 TGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAAGA 691
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 256 TGAGTCCATGGGAAGCAATTGGGTCGGTGGGAGTGAGGAACTTTATGTTGTGTAAGAA-A 314
Query 692 AACCAGAGGAGAAGAAGGTTGAGGAAGATAAGGGAAGATCGAATTTTCCGATTAATGGAG 751
||||||||||||||||| |||| ||| || ||||||||||||||||||| ||||||||
Sbjct 315 --CCAGAGGAGAAGAAGGTGGAGGGAGACAATGGAAGATCGAATTTTCCGAATAATGGAG 372
Query 752 CTAGAAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTAAGACTTAAAG 811
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 373 CTAGGAAAGGAGCTGGTGGAAGTTTTAAGGCTTGGATTAATAAATCTTTTAGTCTTAAAG 432
Query 812 TGACTACCCATTAGAGAGACTACTTATATGTTGTCTTC 849
||||||||||||||||| | || | || ||| ||||||
Sbjct 433 TGACTACCCATTAGAGACA-TA-T-ATGTGT-GTCTTC 466
> Ahg921353 jgi|Araly1|921353|scaffold_102634.1
Length=197
Score = 248 bits (134), Expect = 5e-65
Identities = 177/196 (90%), Gaps = 10/196 (5%)
Strand=Plus/Plus
Query 147 CTCTGGTGACGTTTTGTGAATGGTGGAAACTAATCTGATTGGTGATAATCATAGGCTCAC 206
||| ||||||| ||||||||||||||||||||||| ||| |||||||||| || ||||||
Sbjct 4 CTCCGGTGACG-TTTGTGAATGGTGGAAACTAATCCGATAGGTGATAATCTTAAGCTCAC 62
Query 207 CCTTTCAACTAA-AAGGGCGAGCTTTCT-CATCATCCCTCTCTC-TCAAGACTCTGTTTT 263
||||||||| || ||||||||||||| | ||||||||||||||| || ||||||||||||
Sbjct 63 CCTTTCAAC-AACAAGGGCGAGCTTT-TACATCATCCCTCTCTCTTC-AGACTCTGTTTT 119
Query 264 CTCATTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTTGACCCGTGAAC 323
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 CGCTTTCGGTTCTTGCAAAGAAGGCTGGTACTTCCGTTGCATTGGCCTCGACCCGTGAAA 179
Query 324 -CAATCAATCATCATC 338
|| ||| ||||||||
Sbjct 180 TCA-TCA-TCATCATC 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5