BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23160.1
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488150 jgi|Araly1|488150|fgenesh2_kg.6__1284__AT5G13320.1 1181 0.0
Ahg472573 jgi|Araly1|472573|fgenesh2_kg.1__2527__AT1G23160.1 841 0.0
> Ahg488150 jgi|Araly1|488150|fgenesh2_kg.6__1284__AT5G13320.1
Length=1942
Score = 1181 bits (639), Expect = 0.0
Identities = 1378/1722 (80%), Gaps = 101/1722 (6%)
Strand=Plus/Plus
Query 59 ATTTAACATCAAATGT-AACGCAGATACAAGACAA-TGTATTGGAGGAGATACTCACA-C 115
||||||| ||| |||| || ||| ||||||||||| | | || ||||||||| ||||| |
Sbjct 138 ATTTAACTTCAGATGTGAA-GCAAATACAAGACAACT-TGTTAGAGGAGATAATCACACC 195
Query 116 TAA-ATGC-AAACACGAATTATCTCCAAAAGTTCTTC-CTTGGA-AGCTTTGATAAAGAA 171
|| | | ||||| | | || |||| || ||| ||| | | || || || ||||||| |
Sbjct 196 CAACA-CCAAAACA-G-AGTACCTCC-AACGTT-TTCTCATCGATAGGTTCGATAAAG-A 249
Query 172 AGT-TTCAAGAAGAACGTACCAG-TGGTAACTTATGAAGATGTTAAGCCATATATCGAAC 229
| |||||||| |||||||| | | || || ||||||||| ||||||| ||| | || |
Sbjct 250 TCTCTTCAAGAAAAACGTACC-GATCGTGACATATGAAGATATTAAGCCTTATCTGGATC 308
Query 230 GTGTCGTGAATGGAGAGCCCT-CGAATGTCATTTCGGCCCGGCCTATAACCGGTTT-TGT 287
||||||| ||||||||| | | || |||| || ||||| || ||||| |||||||| | |
Sbjct 309 GTGTCGTTAATGGAGAGTCATCCG-ATGTTATATCGGCTCGACCTATTACCGGTTTCT-T 366
Query 288 ACTAAGTACGGGAACTTCAGGGGGAGCACAAAAGATGATGCCATGGAATGAAAAA-TATT 346
|||||| |||||||||| ||||||||||||||||||||||||||||| || || || |
Sbjct 367 GCTAAGTTCGGGAACTTCTGGGGGAGCACAAAAGATGATGCCATGGAAC-AACAAGTACT 425
Query 347 TAGACAACTTGACCTTCATGTATGATCTTCGTATGCATA-TTATAAGCAATAATGTGAAA 405
| ||||| ||||| ||||| || |||||||||||||| | |||||| ||| ||||| ||
Sbjct 426 TGGACAATTTGACTTTCATCTACGATCTTCGTATGCA-AGTTATAACCAAGCATGTGGAA 484
Query 406 GATGTGGA-GAAAGGAAA-GGCGATGATGTTT-TACTTCACTAAACTCGAATCCATCACT 462
| |||||| ||| ||||| || |||||||||| | ||| ||||||| |||||||| |||
Sbjct 485 GGTGTGGAAGAA-GGAAAAGG-GATGATGTTTCT-CTTTACTAAACAAGAATCCATGACT 541
Query 463 CCCTCTGGCTTGCCTGCTCGAGTCGCCAGCAGTAGCTATTTAAAGAGCAACTATTTCAAG 522
|| ||||||||||||||||||||||| | ||| |||||||| ||||| |||||||||||
Sbjct 542 CCTTCTGGCTTGCCTGCTCGAGTCGCAACCAGCAGCTATTTGAAGAGTGACTATTTCAAG 601
Query 523 AACCGTCCATCAAACTGGTATTACTCTTACACAAGCCCTGATGAAGTCACTCT-ATGTCC 581
|||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||| ||| ||
Sbjct 602 CACCGGCCATCGAACTGGTACTACTCGTACACGAGCCCTGATGAAGTCA-TCTTATGCCC 660
Query 582 -AGACAACAAACAAAATCTCTACTGCCATTTGCTTTGTGGTCTG-GTTCAAAGA-AACGA 638
| |||||| |||| ||| |||||||||||||| ||||| || || |||||| || ||
Sbjct 661 TA-ACAACACCCAAAGTCTGTACTGCCATTTGCTCTGTGG-CTTAGTCCAAAGAGAA-GA 717
Query 639 GGTTACAAGAATGGGTTCTATCTTCGCCTCCGTTATGGTCCGAGCAATCAAGTTTCTTGA 698
|||| |||| |||||| ||||| || || || ||||||||||| ||| || ||||| |
Sbjct 718 GGTTGTGAGAACGGGTTCCATCTTTGCTTCGGTCATGGTCCGAGCTATCGAGGTTCTT-A 776
Query 699 AGA-TTCATGGGAAGAGTTGTGTTCAAACATCCGATCAGGGC-AGCTCAGCGAGTGGATC 756
||| ||| |||| ||||||||||||||||||||||| |||| | |||||| | ||| ||
Sbjct 777 AGAATTCTTGGGTGGAGTTGTGTTCAAACATCCGATC-GGGCCATCTCAGCAACTGGGTC 835
Query 757 ACGGACATTGG-TTGTCGA-GATTCGGTGTCTCTAGTTCTTGGTGGGCCTCATCCTGAAG 814
|| ||| |||| ||||| | | | | || ||| | || ||||| ||||| | |||||||
Sbjct 836 ACAGAC-TTGGGTTGTCAAAGCT-CTGTTTCTTTGGTCCTTGGAGGGCCACGTCCTGAAT 893
Query 815 CGGCAGACACCATTGAACAAATATGCAACCAAAAATGTTGGAAAGGTATAATCACAAGAC 874
|||||||| || ||| |||||||||||||||| | ||||||||||||| ||| ||||
Sbjct 894 TAGCAGACACGATCGAAGAAATATGCAACCAAAAGTCTTGGAAAGGTATAGTCAAAAGA- 952
Query 875 TT-TGGCCAAA-AGCTAAATATATTGAAACTATTGTTACTGGTTCGATGGTG-CAGTATG 931
|| |||||||| | | |||||||| |||||| ||||||| ||||| |||| | ||||| |
Sbjct 953 TTGTGGCCAAACACC-AAATATATCGAAACTGTTGTTACCGGTTCAATGG-GACAGTACG 1010
Query 932 TTCCCACATTGAACTATTACTCTAATAA-TATGTTACCTCTCATTTCAACAATCT-ACGC 989
|||||| |||||||| || | ||| | | || |||||| ||||||||| || |||
Sbjct 1011 TTCCCATGTTGAACTACTATTGTAACGACT-TG---CCTCTCGTTTCAACAA-CTTACGG 1065
Query 990 TTCTTCGGAGACT-CAATTCGGGTTAAATCTCA-ATCCTATGTGCAAGCCTGAAGATGTA 1047
||||||||||||| | || ||| | ||||| | ||||| ||||||| |||||||||||
Sbjct 1066 TTCTTCGGAGACTACCTTT-GGGATCAATCT-AGATCCTCTGTGCAAACCTGAAGATGTT 1123
Query 1048 TCGTACACATTCATGCCCAACGTGTCCTACTTCGAGTTCATACCAGTGGATGGAGACAAG 1107
|| ||||| |||||||||||| |||| ||||| |||||||||||| |||||||||||||
Sbjct 1124 TCTTACACTTTCATGCCCAACATGTCTTACTTTGAGTTCATACCAATGGATGGAGACAAT 1183
Query 1108 AACGATGTTGTTGACCTTGCTGATGTCAAACTTGGATGTTGTTATGAGGCTGTCGTCACA 1167
|||||||| || ||||||| ||||| ||||| || || |||||| | || ||||||
Sbjct 1184 AACGATGTGGTCGACCTTGAAGATGTGAAACTCGGGTGCACTTATGAACCCGTGGTCACA 1243
Query 1168 AATTTTTCAGGCTTGTATAGAATAAGAGTTGGAGACATTCTAGTGGTGACTGGTTTCCAT 1227
||||| | ||||||||||| || ||||| ||||| ||| || |||||||||||||| |
Sbjct 1244 AATTTCGCCGGCTTGTATAGGATGAGAGTGGGAGATATTGTACTGGTGACTGGTTTCTAC 1303
Query 1228 AACAAAGCACCTCAGTTTAGGTTTATAAGAAGAGACAACGTGGTTTTAAGCATTGACTTG 1287
||||| || |||||||||| |||| |||||||||| ||||| || |||||||| || ||
Sbjct 1304 AACAACGCGCCTCAGTTTAAGTTTGTAAGAAGAGAAAACGTCGTCTTAAGCATCGA-TTC 1362
Query 1288 -GACAAAACTAACGAAGATGATCTGTTTAAGGCGGTGAAT-AACGCAAAACTCACTCTTG 1345
|| |||||||||||||| ||||||||||||||||||| | || || || || ||| |
Sbjct 1363 CGATAAAACTAACGAAGAAGATCTGTTTAAGGCGGTGAGTCAA-GCGAAGCTGGTTCTCG 1421
Query 1346 ACTCATCACATCTC-ATGCT-AATAGACTTCACTAGCTATGCTGATATCTCCAC-TATCC 1402
| |||| | |||| || || || ||||||||| || |||||||| | ||| || | |||
Sbjct 1422 AGTCATTAGGTCTCGAT-CTGAA-AGACTTCACCAGTTATGCTGACACCTCAACATTTCC 1479
Query 1403 CGGGACACTACGTAGTTTA-TTGGGAAGTAAAGAACAAAAACGAAGACAAGAAGAGCAAA 1461
||| |||||||| ||||| |||| ||||| | | |||| | | ||| |||||| | |
Sbjct 1480 CGGT-CACTACGTGGTTTACTTGG-AAGTAGATACCAAAGAGGGAGAGGAGAAGA--AGA 1535
Query 1462 AAG-CACA-TA-GAGCTCAAAGAAGAGACATTCTCGGA-GTGTTGTTTACTAATGGAGGA 1517
| |||| | |||||| | |||||| || |||| | ||||||||| ||||||||||
Sbjct 1536 C-GTCACAGTTTGAGCTCGATGAAGAGGCACTCTCC-ATGTGTTGTTTGGTAATGGAGGA 1593
Query 1518 TTCA-TTAGACAGTGTTTACAAGATTTGTCGGTTTAAGGA-GGAATCTG-TAGGACCAT- 1573
|| || || | ||||||||||| ||||| || || || ||| || | | || || |
Sbjct 1594 GTCGCTT-GATAATGTTTACAAGAGATGTCGATTCAAAGACGGA-TC-GATCGGGCC-TC 1649
Query 1574 TGGAGATAAAAGTGGTGCGTCAAGGGACATTTGATT-CTCTCATGGA-TTACTTCATCTC 1631
||||||||| ||||||||||||||| || ||| ||| |||||||||| || |||||||||
Sbjct 1650 TGGAGATAAGAGTGGTGCGTCAAGGAACGTTT-ATTTCTCTCATGGACTT-CTTCATCTC 1707
Query 1632 ACAAGGTGCTTCTATTGGTCAATACAAGACTCCAAGGTGCATTAAATCTGGAAAAGCCTT 1691
|||||||||||| | |||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 1708 ACAAGGTGCTTCCACTGGTCAATACAAGACTCCCAGATGCATTAAATCAGGGAAAGCCTT 1767
Query 1692 AG-AGGTATTAGAGGAAAA-TGTGGTAGCCACATTCTTCAGT 1731
| | ||| | ||| | | ||||||||||| ||||||||||
Sbjct 1768 -GCAAGTACTGGAG-ACATGTGTGGTAGCCAAATTCTTCAGT 1807
> Ahg472573 jgi|Araly1|472573|fgenesh2_kg.1__2527__AT1G23160.1
Length=1431
Score = 841 bits (455), Expect = 0.0
Identities = 660/748 (88%), Gaps = 58/748 (8%)
Strand=Plus/Plus
Query 816 GGCAGACACCATTGAACAAATATGCAACCAAAAATGTTGGAAAGGTATAATCACAAGACT 875
|||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 621 GGCAAACACCATTGAAAAAATATGCAACCAAAAATGTTGGAAAGGTATAGTAACAAGACT 680
Query 876 TTGGCCAAAAGCTAAATATATTGAAACTATTGTTACTGGTTCGATGGTGCAGTATGTTCC 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTGGCCAAAAGCTAAATATATTGAAACTATTGTTACTGGTTCGATGGTGCAGTATGTTCC 740
Query 936 CACATTGAACTATTACTCTAATAATATGTTACCTCTCATTTCAACAATCTACGCTTCTTC 995
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 741 CACATTGAACTATTACTCTAATGATATGTTACCTCTCATTTCAACAATCTACGCTTCTTC 800
Query 996 GGAGACTCAATTCGGGTTAAATCTCAATCCTATGTGCAAGCCTGAAGATGTATCGTACAC 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GGAGACTCAATTCGGGTTAAATCTCAATCCTATGTGCAAGCCTGAAGATGTATCGTACAC 860
Query 1056 ATTCATGCCCAACGTGTCCTACTTCGAGTTCATACCAGTGGATGGAGACAAGAACGATGT 1115
|||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 861 GTTCATGCCAAACGTGTCCTACTTCGAGTTCATACCTGTGGATGGAGACAAGAACAATGT 920
Query 1116 TGTTGACCTTGCTGATGTCAAACTTGGATGTTGTTATGAGGCTGTCGTCACAAATTTTTC 1175
|||||||||||||||||||||||| ||||||| |||||| ||||| || |||||||| |
Sbjct 921 TGTTGACCTTGCTGATGTCAAACTCGGATGTTCTTATGAAGCTGTGGTTACAAATTT--C 978
Query 1176 AGGCTTGTATAGAATAAGAGTTGGAGACATTCTAGTGGTGACTGGTTTCCATAACAAAGC 1235
|| | | | ||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 979 AG------A-A---TCAGAGTTGGAGATATTCTAGTGGTAACTGGTTTCCACAACAAAGC 1028
Query 1236 ACCTCAGTTTAGGTTTATAAGAAGAGACAACGTGGTTTTAAGCATTGACTTGGACAAAAC 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 ACCTCAGTTTAGGTTTATAAGAAGAGACAACGTGGTTTTAAGCATTGACTTGGACAAAAC 1088
Query 1296 TAACGAAGATGATCTGTTTAAGGCGGTGAATAACGCAAAACTCACTCTTGACTCATCACA 1355
|||||| ||||||||||||||||| |||||| || |||||||||||| ||||||||| |
Sbjct 1089 TAACGAGGATGATCTGTTTAAGGCCGTGAATCGCGGAAAACTCACTCTCGACTCATCAGA 1148
Query 1356 TCTCATGCTAATAGACTTCACTAGCTATGCTGATATCTCCACTATCCCGGGACACTACGT 1415
|||||||||| | || | | ||| | ||||||||||| |||||||||| |
Sbjct 1149 TCTCATGCTA---G-CT--A-T-GCT--G---ATATCTCCACTGTCCCGGGACA--A--- 1190
Query 1416 AGTTTATTGGGAAGTAAAGAACAAAAACGAAGACAAGAAGAGCAAAAAGCACATAGAGCT 1475
| | | ||||| ||| || || | ||||||| || || |||||||
Sbjct 1191 A----A-----AC--AAAGA-CAAGAA-GA-G-CAAGAAG--CA-----CA--TAGAGCT 1226
Query 1476 CAAAGAAGAGACATTCTCGGAGTGTTGTTTACTAATGGAGGATTCA-TTAGAC-AGTGTT 1533
|||| ||||||||||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct 1227 CAAACAAGAGACATTCTCGGAGTGTTGTTTACTAATGGAGGATTCACTT-GACGAG-GTT 1284
Query 1534 TACAAGATTTGTCGGTTTAAGGAGGAAT 1561
||||||| ||||||||||||||||||||
Sbjct 1285 TACAAGAATTGTCGGTTTAAGGAGGAAT 1312
Score = 540 bits (292), Expect = 1e-152
Identities = 387/429 (90%), Gaps = 21/429 (5%)
Strand=Plus/Plus
Query 247 CCCTCGAATGTCATTTCGGCCCGGCCTATAACCGGTTTTGTACTAAGTACGGGAACTTCA 306
||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 154 CCCTCGAATGTCATTTCAGCCCAGCCTATAACCGGTTTCGTACTAAGTTCGGGAACTTCA 213
Query 307 GGGGGAGCACAAAAGATGATGCCATGGAATGAAAAATATTTAGACAACTTGACCTTCATG 366
||||||||||||||||||||||||||||||||||||||||||| | || | | ||
Sbjct 214 GGGGGAGCACAAAAGATGATGCCATGGAATGAAAAATATTTAG---A-TT---C-T--TG 263
Query 367 TATGATCTTCGTATGCATATTATAAGCAATAATGTGAAAGATGTGGAGAAAGGAAAGGCG 426
||||||||||| | || ||| |||||||||| ||||||||||||||||||||
Sbjct 264 TATGATCTTCG---G------AT--GCATTAATGTGAAAAATGTGGAGAAAGGAAAGGCG 312
Query 427 ATGATGTTTTACTTCACTAAACTCGAATCCATCACTCCCTCTGGCTTGCCTGCTCGAGTC 486
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 313 ATGATGTTTTACTTCACTAAACTCGAATCCATCACTCCCTCTGGCTTGCCCGCTCGCGTC 372
Query 487 GCCAGCAGTAGCTATTTAAAGAGCAACTATTTCAAGAACCGTCCATCAAACTGGTATTAC 546
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 373 GCAAGTAGTAGCTATTTAAAGAGCAACTATTTCAAGAACCGTCCATCGAACTGGTATTAC 432
Query 547 TCTTACACAAGCCCTGATGAAGTCACTCTATGTCCAGACAACAAACAAAATCTCTACTGC 606
| ||||| || || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 433 ACGTACACCAGTCCAGATGAACTCACTCTATGTCCAGACAACAAACAAAATCTCTACTGC 492
Query 607 CATTTGCTTTGTGGTCTGGTTCAAAGAAACGAGGTTACAAGAATGGGTTCTATCTTCGCC 666
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 493 CATTTGCTTTGTGGTCTAGTTCAAAGAAACGAGGTTACAAGAATGGGTTCCATCTTCGCC 552
Query 667 TCCGTTATG 675
|| || |||
Sbjct 553 TCAGTCATG 561
Score = 174 bits (94), Expect = 2e-42
Identities = 142/163 (87%), Gaps = 11/163 (7%)
Strand=Plus/Plus
Query 49 GTTCTAGAGGATTTAACATCAAATGTAACGCAGATACAAGACAATGTATTGGAGGAGATA 108
||||||||||||||||||||||||||||||||| |||||||||||| | | | ||
Sbjct 1 GTTCTAGAGGATTTAACATCAAATGTAACGCAGTTACAAGACAATG-A----A--A--TA 51
Query 109 CTCACACTAAATGCAAACACGAATTATCTCCAAAAG-TTCTTCCTTGGAAGCTTTGATAA 167
|||||||| || |||||||| ||||||||||||| | ||||||| |||||| ||||||||
Sbjct 52 CTCACACTTAACGCAAACACAAATTATCTCCAAA-GCTTCTTCCGTGGAAGATTTGATAA 110
Query 168 AGAAAGTTTCAAGAAGAACGTACCAGTGGTAACTTATGAAGAT 210
||| | |||||||||||||||||||||||| |||||||| |||
Sbjct 111 AGAGATTTTCAAGAAGAACGTACCAGTGGTGACTTATGACGAT 153
Score = 82.4 bits (44), Expect = 1e-14
Identities = 53/57 (93%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 709 GAA-GAGTTGTGTTCAAACATCCGATCAGGGCAGCTCAGCGAGTGGATCACGGACAT 764
||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 561 GAAGGAGTTGTGGTCAAACATACGATCGGGGCAGCTCAGCGAGTGGATCACGGACAT 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5